Basic Information

Insect: Linnaemya vulpina
Gene Symbol: -
Assembly: GCA_963675445.1
Location: OY776278.1:14258298-14260025[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.04 4.7 9.1 7.3 1 23 243 265 243 265 0.96

2 9 0.082 9.7 8.1 5.1 1 23 271 295 271 295 0.97

3 9 2e-05 0.0024 19.4 2.1 1 23 303 328 303 328 0.97

4 9 5.4e-05 0.0064 18.1 1.4 1 23 337 359 337 359 0.95

5 9 8.2e-05 0.0097 17.5 0.9 1 23 367 391 367 391 0.95

6 9 0.00095 0.11 14.2 0.6 1 23 397 419 397 419 0.97

7 9 9.3e-05 0.011 17.4 0.9 1 23 425 448 425 448 0.96

8 9 0.042 5 9.0 1.5 1 23 454 476 454 476 0.97

9 9 0.00011 0.013 17.1 0.5 1 23 482 504 482 504 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.04	4.7	9.1	7.3	1	23	243	265	243	265	0.96
2	9	0.082	9.7	8.1	5.1	1	23	271	295	271	295	0.97
3	9	2e-05	0.0024	19.4	2.1	1	23	303	328	303	328	0.97
4	9	5.4e-05	0.0064	18.1	1.4	1	23	337	359	337	359	0.95
5	9	8.2e-05	0.0097	17.5	0.9	1	23	367	391	367	391	0.95
6	9	0.00095	0.11	14.2	0.6	1	23	397	419	397	419	0.97
7	9	9.3e-05	0.011	17.4	0.9	1	23	425	448	425	448	0.96
8	9	0.042	5	9.0	1.5	1	23	454	476	454	476	0.97
9	9	0.00011	0.013	17.1	0.5	1	23	482	504	482	504	0.97

Sequence Information

Coding Sequence: atgttcaattcaaatttaaaattttcactttgTCGTACTTGTCTGGCAgcttttttgcaaagaaaagcttacaatatatttcatactatGGATCTGGCCAAGAAATTAGCGATATGCTCTGGACTGTCAGTGGAAAAAACAGATGAATATCCCGAAAATGTTTGCCTGGAATGCTACAAACAAATTGTTATGTTTTATGAATTTCAACAAATGTGCTGCAAATCTTTAAACACATTTcgtgaaattttgaaatataaggAATCTTTAATAGAAGAAAGCAGCAATAACAATGCTCAACCTGATACAAAAGCGGTGGACCCTTTAAATGTAGACAATAGAGTCTCAAGTCCTTCAACTAAAAAGTCTAGTATTACGATTAAATGTTTGGAAATGAGAAAAGGTAACAGCTCAGCGAAAAAAATAGAATATCGTAGGACGAAGAGGAATATAAtacgaaaaaattacaaaagtcCTTCCAAACATGATGAAGGAAATGATTTGGAACAAAATATACAACCTGATAAAGAAAGTATTGTATATTTGGAAAACGAAAGTATTACTGCAGAAAATAAGTCTTCGCTCGATCAAGATTTCACACAATTAATAAAGAATGAACcagatttaaataatgaaattaaaactatCAGGGAAGGGCAGGAAgaaaaaAGTTTTGCAGGTGCGGAAAGTAGCTCTTCTTCACAGGAATCCACAACGCAAACTCAAACCCATCGTTGTGATTGTTGCAATAAACGGTTCAAATCTCTGTTCAGATTAAAAGCCCATATACGGCAACATGGTGGCTTACCTCCCTACGTGTGCTCATATGAAGGATGTGAATGTTCATTTGATAGTTGTTATCTGTACAATAAACATAAAAGGGAGCACAACGTGATACAAGAAGAAACTTTTAAATGTGATGTCAACAATTGTGAACGagtctataaaaataaatcaaacctTAATGTACACAAACGGAAATTTCACAATCTGGGTCCACAACTTAAAACACATATGTGCGAAATCTGTGGGAAAGTATTTAAATCTTCTGCTGTATTAAATGATCATCATTATATACACATTGATAAAACGCAACTGCCATTTGCCTGTGAAGAGGAGGGATGCAGTAAACGCTTTTCCAATAAGGAAAAGCTTAAAGTTCATAAAATGCGTCATgctggtataaaaaattttatatgtcccTATTGTGGCATGCGCAAGACTACACGAAATGAACTGAAAATTCACATTAATTATCACACCCTGGAAAGAACTTATCCTTGCAGTTTTTGTCCCAAAGTTTGCAATAGTGCTGGTAATTTAAAAATGCACGTGAAAAATATGCATGAGAGAGCTAAAGATTTTGCATGCAGATTTTGTGAGCGTACTTTTGCAAAAGCCGATACGAAAAAGTATCATGAAATGACTCATACAGGAGAAAAACCGCACGAATGTGAAGAATGTGGCCGCAGATTTCTCCAGCCAGCCGCTTTAAGGACTCATCGGAAGATACATTTGAGACAAAAGGCAAAATTGGCAGAATACCGAACGCCTAAGGAATCCATTGTAGTGGAGATATTGCAGGAGAATACGATAGAAGTTTAG
Protein Sequence: MFNSNLKFSLCRTCLAAFLQRKAYNIFHTMDLAKKLAICSGLSVEKTDEYPENVCLECYKQIVMFYEFQQMCCKSLNTFREILKYKESLIEESSNNNAQPDTKAVDPLNVDNRVSSPSTKKSSITIKCLEMRKGNSSAKKIEYRRTKRNIIRKNYKSPSKHDEGNDLEQNIQPDKESIVYLENESITAENKSSLDQDFTQLIKNEPDLNNEIKTIREGQEEKSFAGAESSSSSQESTTQTQTHRCDCCNKRFKSLFRLKAHIRQHGGLPPYVCSYEGCECSFDSCYLYNKHKREHNVIQEETFKCDVNNCERVYKNKSNLNVHKRKFHNLGPQLKTHMCEICGKVFKSSAVLNDHHYIHIDKTQLPFACEEEGCSKRFSNKEKLKVHKMRHAGIKNFICPYCGMRKTTRNELKIHINYHTLERTYPCSFCPKVCNSAGNLKMHVKNMHERAKDFACRFCERTFAKADTKKYHEMTHTGEKPHECEECGRRFLQPAALRTHRKIHLRQKAKLAEYRTPKESIVVEILQENTIEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -