Basic Information

Insect: Linnaemya vulpina
Gene Symbol: -
Assembly: GCA_963675445.1
Location: OY776279.1:19871708-19873687[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 8.4e-05 0.0099 17.5 5.6 1 23 322 344 322 344 0.98

2 8 1.6e-05 0.0019 19.8 1.8 1 23 353 375 353 375 0.98

3 8 1.3e-05 0.0016 20.0 1.8 1 23 383 406 383 407 0.95

4 8 0.09 11 8.0 2.5 3 23 414 434 413 434 0.97

5 8 0.0018 0.22 13.3 1.4 2 23 443 465 442 465 0.95

6 8 0.00082 0.098 14.4 0.2 1 23 473 496 473 496 0.96

7 8 2.3e-06 0.00028 22.4 0.7 1 23 502 524 502 524 0.98

8 8 1.4e-05 0.0016 20.0 2.2 1 23 530 553 530 553 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	8.4e-05	0.0099	17.5	5.6	1	23	322	344	322	344	0.98
2	8	1.6e-05	0.0019	19.8	1.8	1	23	353	375	353	375	0.98
3	8	1.3e-05	0.0016	20.0	1.8	1	23	383	406	383	407	0.95
4	8	0.09	11	8.0	2.5	3	23	414	434	413	434	0.97
5	8	0.0018	0.22	13.3	1.4	2	23	443	465	442	465	0.95
6	8	0.00082	0.098	14.4	0.2	1	23	473	496	473	496	0.96
7	8	2.3e-06	0.00028	22.4	0.7	1	23	502	524	502	524	0.98
8	8	1.4e-05	0.0016	20.0	2.2	1	23	530	553	530	553	0.98

Sequence Information

Coding Sequence: ATGGAATCTTATTGTATGTTGTGTCTGGTTACTGAACGTGAAGCGATTggtcaaataaaagttaaatcaaTAAAATGGCAGATAGAAAACGTAGAATATATAATAGagaaacatctttggcaaataGATGCCGTTGATTCTTCAGGCTTCGTATGTATTGGCTGTTGGAATTCTTTAGAGAGCTTTCATAAGTTTTATTTGCGTGTTAAAGAAGCTCACAATAGTCTAGCTTCAGGAAGTGAAACAAAGTATGTAGAAAACACCCCAATTCATGACTTAAGCAGATCTATCGATTGTAAACAAGAATATGTAGAAAGTAATATTGAAACGGAAATTTTAATAGAACAGCCTTCCTCCAAAGAATATGGCATAGAACATAAAAATCCTTTGATAAAAGCAGAATGTGACGAAACTTTTCTGGAAGACGTGCCACTAAAACAAAGACGTAAAAGAGGTCGTCCGCCCAAACATATAGTATGTGACTTGGAAGAAAACTGTACAGATCCtctaaggaaaaaaaataagtcTAAGCCATGcgcgaaaaataaaaagtctaaAGAAGTTTTAAAGGTTGAATTATCAAAAATCGGTagcaaaaatgaagaaaatttaatagaatatgAACAAATTAATGGTGAATTTTCCAATAACGCTAATAACAGCGAACACCTAGGCTCTGATACGGATTATGAGGATTGCGATGGTAAACCACCATCAGAAAACTACAAGAAAAAACGCAAAAACCCTGATGAGCAAACTCGACAGGAacatgacaaaattattgccgaatattttaaaatttattgcagtttTTGTCAAACGCCAATGCAAAATTTCATAGCTCTTCGAAAACATTTTCGAGATGAACACAAAAAACGCGGTTTTGTAatatgttgtaaaaaaaaaattttcactcgGCCGATACTTGTGGATCACATACGTTTACACTTAGACCCCAACTTCTTCAAATGTAAACACTGTGATAAAGTTTACTCTGATCGCTGTACTTTGGAGAGTCACGTAAAACTTCATGAGGATAGGCAACAGTATCGTAACCATACTTGTGATACGTGTGGCAAATCATTTGTCGGCTCTACTCAATTAGAAACTCATAAACTGACACATGCTCctaattatgaaaaacaattttcttgcaGCGAATGTGGGAAATACTTCACCACATTATACAGCCTTAATTATCACATTCAAGCAATACATCACAATAAGTATGTCAAAATTTGTGATATATGTGGGAAAACTATAAGATGCCGTaactcatttaaattacatatggaaaaacatgaaaataaattacgAACCCCCATTCATTGTGATATTTGTGGTCTACGCTTAAGTGATAGGCGAGGTTTAAGACGACACAAAAATTCCCAACATCCAATTGATGGCAAGAAAGAATACTCCTGCAATGTATGCTCGAAAATATCTCCGAATTTAAGAGCCCTTCGCACTCATATACGTTTTGCTCACGAAACGGGTTGCATACACAAGTGCACAATGTGCGACAGGGCATTTAAAAGGCCTGAAGCTTTAAAgGAACATGTGGCTACACATACTGGTACTCCATTATATACTTGCCCCTGGTGTCCAAAAACATTCATATCGAACGGGAATATGCACACCCATCGAAAAAAAACACATCCAAAAGAATGGGAAAATGCTCAACGCGAAAAATATGGTGGAATACTTCATTCGAATTATAAAGAACCTATTCCTTCAAATGAAGATATAAGTAAAACATTGTAA
Protein Sequence: MESYCMLCLVTEREAIGQIKVKSIKWQIENVEYIIEKHLWQIDAVDSSGFVCIGCWNSLESFHKFYLRVKEAHNSLASGSETKYVENTPIHDLSRSIDCKQEYVESNIETEILIEQPSSKEYGIEHKNPLIKAECDETFLEDVPLKQRRKRGRPPKHIVCDLEENCTDPLRKKNKSKPCAKNKKSKEVLKVELSKIGSKNEENLIEYEQINGEFSNNANNSEHLGSDTDYEDCDGKPPSENYKKKRKNPDEQTRQEHDKIIAEYFKIYCSFCQTPMQNFIALRKHFRDEHKKRGFVICCKKKIFTRPILVDHIRLHLDPNFFKCKHCDKVYSDRCTLESHVKLHEDRQQYRNHTCDTCGKSFVGSTQLETHKLTHAPNYEKQFSCSECGKYFTTLYSLNYHIQAIHHNKYVKICDICGKTIRCRNSFKLHMEKHENKLRTPIHCDICGLRLSDRRGLRRHKNSQHPIDGKKEYSCNVCSKISPNLRALRTHIRFAHETGCIHKCTMCDRAFKRPEALKEHVATHTGTPLYTCPWCPKTFISNGNMHTHRKKTHPKEWENAQREKYGGILHSNYKEPIPSNEDISKTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899989;
90% Identity: -
80% Identity: -