Basic Information

Insect: Linnaemya vulpina
Gene Symbol: -
Assembly: GCA_963675445.1
Location: OY776279.1:10320430-10322376[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.34 40 6.2 1.3 2 23 268 289 267 290 0.93

2 10 0.0071 0.84 11.4 0.6 6 23 299 316 299 316 0.99

3 10 0.0008 0.095 14.4 1.1 1 23 322 344 322 344 0.99

4 10 0.1 12 7.8 0.2 1 23 352 374 352 374 0.89

5 10 1.8e-07 2.2e-05 25.9 1.4 1 23 382 405 382 405 0.98

6 10 0.00014 0.017 16.8 0.7 3 23 413 433 412 433 0.97

7 10 0.018 2.1 10.2 0.1 2 23 441 463 440 463 0.93

8 10 5.4 6.4e+02 2.4 1.5 1 15 471 485 471 494 0.63

9 10 6.3e-07 7.4e-05 24.2 3.9 1 23 500 522 500 522 0.98

10 10 0.00013 0.016 16.9 3.8 1 23 528 551 528 551 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.34	40	6.2	1.3	2	23	268	289	267	290	0.93
2	10	0.0071	0.84	11.4	0.6	6	23	299	316	299	316	0.99
3	10	0.0008	0.095	14.4	1.1	1	23	322	344	322	344	0.99
4	10	0.1	12	7.8	0.2	1	23	352	374	352	374	0.89
5	10	1.8e-07	2.2e-05	25.9	1.4	1	23	382	405	382	405	0.98
6	10	0.00014	0.017	16.8	0.7	3	23	413	433	412	433	0.97
7	10	0.018	2.1	10.2	0.1	2	23	441	463	440	463	0.93
8	10	5.4	6.4e+02	2.4	1.5	1	15	471	485	471	494	0.63
9	10	6.3e-07	7.4e-05	24.2	3.9	1	23	500	522	500	522	0.98
10	10	0.00013	0.016	16.9	3.8	1	23	528	551	528	551	0.98

Sequence Information

Coding Sequence: atggAAGGTTGTTTACTATGCCTACAACTAAAGCAGGAGTTTGTTGGCAAAATTGTCGTAAATTCCCAGCAATggcatgaattaaaaataaaaaatattttaaacaaatatctgTGGTCCATGAATCACATCAAAGATAACTCATGGATGTGTACTAACTGCTGGAATGAATTGTAcgaatttcataatttttatatgcgtATAGAAGAGGCTCATAAAAATCTCGGTTTAGTCGAGAAAAGTGTGGAAGTAGAGGAAACAGTTTCGAACAATGCAGAAAGTACATCTAATGAAATTATGGAAAGTCCAATCAGTCCATCGATTGAAAAGCCATTCGAAATATTAGTGGAAAGTGCTGCAGTCGAACTTAAgaatttcttaaatgaaactgAAGTCAGtggtattaattttaaaagtattacaaCGGAAGAAGAGCAGAAAccattattatatattgaactACATGACCAATCAATCGATAGCACTCAAAAACGCAGGCGCGGACGACCGCGTAAAGGTGAAATTGGTAAATCTaccttaaataaaacaagaaagaaCGAAGCTCGCGACTTTGAGGATATCTGTAGTGATACACATAAATCGATGGAATCTTTAGATAAAACTAAGGAATTCAAACAAATCAAATCCCATAAAGTTGACACAGAAAACACTTCAAATAACGTAAATAATTATGACAATGAATCCGATAGGAAATCCTCAAGccacaatgaaataaaatcaaataaccaAAAAATTATACGCAATGAAAAGGATAAGTTTATAGcagataattttaatatgacttGTTTTTTGTGTGACATTCCCTTagatacattttataatatgcgAAAACATTTCGAAATACACCATACAGAACCCGGCCATATTCAATGTtgcaatagaaaattttataggcGTAGCCTCTTAATTGACCATGTTCGTTATCATTTAAATCCAAACTATTTTAAATGCAGTAAATGTGACAAAGTTATGGAAGATAGACGACGTCTAGAGTTGCATATCAAAACTCACGACATTAATAGTGGCAAAAATCATGTTTGTGATGTTTGCGGAAAAGGATTTTTAATACTGGGAGTTTTAAATAAGCACAAAATGATACATTTACCAGAGGAAGAGAAACGATTTCAGTGTTCCGACTGTGGCAAAaaATTTGCAACAAATTATTTGCTCACTACCCATTACCGAATAAATCACCTCAGGAAGTACGTTAAAATCTGCGATACTTGCGGGAAATCTATAAGAGATAAAGACGTTTTTAAGCGGCACATGCTGCGACACGAAGGAAAAACTGCTTCCGTAAGCTGTGATGTATGTGGTTTACTTTTAACAGATAATAAAGCACTAAAACGGCATAAAGATGTAATTCATCCTGCAGGGGGACAAAAAGAGTACATTTGTTCAATATGTTCGAAAAAGTCTCCTAATTTCAGAGCCCATAAGCTTCATGTTCAATTCAAACATGAAACGGGATATAACTTCAAGTGTACTATATGTGAtaagacatttaaaaaatctcatTCATTGAAGGAACACATGGCTTCACATACTGGAACTGTTTTATACACCTGTGCTTGGTGTCCAAAAACGTTTAATTCTAACGCAAACATGCACCATCACCGTAAGAGAGTGCATCCGAAGGAATGGGAAGAAACATCAAGGAAAAGATATTCTGGTAAATTACCACCATACTTTAAACCTCCTACTAAAACAGAGCCCGCTGACTAG
Protein Sequence: MEGCLLCLQLKQEFVGKIVVNSQQWHELKIKNILNKYLWSMNHIKDNSWMCTNCWNELYEFHNFYMRIEEAHKNLGLVEKSVEVEETVSNNAESTSNEIMESPISPSIEKPFEILVESAAVELKNFLNETEVSGINFKSITTEEEQKPLLYIELHDQSIDSTQKRRRGRPRKGEIGKSTLNKTRKNEARDFEDICSDTHKSMESLDKTKEFKQIKSHKVDTENTSNNVNNYDNESDRKSSSHNEIKSNNQKIIRNEKDKFIADNFNMTCFLCDIPLDTFYNMRKHFEIHHTEPGHIQCCNRKFYRRSLLIDHVRYHLNPNYFKCSKCDKVMEDRRRLELHIKTHDINSGKNHVCDVCGKGFLILGVLNKHKMIHLPEEEKRFQCSDCGKKFATNYLLTTHYRINHLRKYVKICDTCGKSIRDKDVFKRHMLRHEGKTASVSCDVCGLLLTDNKALKRHKDVIHPAGGQKEYICSICSKKSPNFRAHKLHVQFKHETGYNFKCTICDKTFKKSHSLKEHMASHTGTVLYTCAWCPKTFNSNANMHHHRKRVHPKEWEETSRKRYSGKLPPYFKPPTKTEPAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00900010;
90% Identity: -
80% Identity: -