Basic Information

Insect: Linnaemya vulpina
Gene Symbol: -
Assembly: GCA_963675445.1
Location: OY776280.1:2090156-2092151[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00077 0.092 14.5 0.2 2 23 232 254 231 254 0.94

2 10 8.9e-05 0.011 17.4 2.8 1 23 261 284 261 284 0.98

3 10 0.015 1.7 10.4 0.5 1 23 289 314 289 315 0.96

4 10 0.0017 0.2 13.4 3.7 1 23 340 362 340 362 0.96

5 10 0.0021 0.24 13.1 0.4 1 23 368 390 368 390 0.97

6 10 0.00019 0.022 16.4 0.3 1 23 397 420 397 420 0.97

7 10 0.36 42 6.1 3.1 1 17 426 442 426 448 0.78

8 10 3.1e-05 0.0037 18.9 0.4 1 23 454 476 454 476 0.97

9 10 0.00012 0.015 17.0 3.2 1 23 483 505 483 505 0.97

10 10 0.0031 0.37 12.6 1.9 1 23 511 533 511 533 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00077	0.092	14.5	0.2	2	23	232	254	231	254	0.94
2	10	8.9e-05	0.011	17.4	2.8	1	23	261	284	261	284	0.98
3	10	0.015	1.7	10.4	0.5	1	23	289	314	289	315	0.96
4	10	0.0017	0.2	13.4	3.7	1	23	340	362	340	362	0.96
5	10	0.0021	0.24	13.1	0.4	1	23	368	390	368	390	0.97
6	10	0.00019	0.022	16.4	0.3	1	23	397	420	397	420	0.97
7	10	0.36	42	6.1	3.1	1	17	426	442	426	448	0.78
8	10	3.1e-05	0.0037	18.9	0.4	1	23	454	476	454	476	0.97
9	10	0.00012	0.015	17.0	3.2	1	23	483	505	483	505	0.97
10	10	0.0031	0.37	12.6	1.9	1	23	511	533	511	533	0.97

Sequence Information

Coding Sequence: atgAGCAGTTTTAGtcataaaaatttacaagaCTTGTGTCGAGCATGTCTAAGAACACTGAAGAACAATCACCTAAGCACAAGCGAAAATTCTAACGCTGATTTCAATTCTGGAATATCTggtttaaatagtttattattgcctAATTTGTGCAAATTGTTTATGTTTCTAACTACCTATGATGCAAGTAAAGAATACGATGATTTTCCTAAACGTTTATGTGAATGGTGCTACGGTCGCCTCTTAGATTATGACGAGTTTCGTAAGCTGGCTGTCAGAAGTactgaaattttatatgaaaaatggaATTCTAATAAAGATGATGGGTCCTTAATAGAAGGTAATACTACGGACACGAAATCGCCCTTTcttgaaaatgttaaaagtgAAGGCGTATTTGAGGAAAACGATGATGATAAATTGCTTTTACCTGAATTGGCCAATATGCCTATGTATATAAAACCTGAATCGGTTTTCGAAGCCATGGATACGCAATTTATACTGCCATCTTATTTAGAAGAGGGAGAAATTAACAGAGACCAAATATCTCACGAATCATACGATACCGAAGAAGATGCTGATGATGAAGAACTACTATTACCAAATGGAGCTGCTAACAATTCTAGTCCTTCAATTACCAATGGCGATGGTAAAGTGGTGCTTACAAAAAAAGATAGATTTCGAAAGTCACTCTATTGTAATGTTTGCAACAAGCAATTTTATAAACAAGTTTATTTAGATGCACATGTCAGGGGAGCGCATCTCGGACAGGACAAACCGTTTCAATGTTCCAGCTGTAGCAAAGCATTTACACGTTACAATCAATTATTTCTTCATATAAAATCTAAGCATATAGAGATGCTCTTTCAGTGTGATTATGAAAATTGTGATGCCTCTTTTGCCCTAGCTATCAAATTAAAAACGCATCGACAAGTTGCACACCATTCTTCTGAGAAACGTGTTAATCAGAACAAGCAAGAAGAAGTACAATCAGTTAATATGGACCATGAAATGGATCATATTTGTTATCTTTGTAGACGTAAATATAGTTCTAAACGTGCCCTTAGAGAGCATATAAAGCGGCATAAAAAGATTAAAGAACATGTTTGTCAAGAATGTGGCGTGGCTAAAGTAACTCGCACCGAGCTAGTTACTCATATGCGGACGCATACACCTAATTTGGAAAAATTCCCTTGTCCTCAATGTCCACAAGTATTTAATCATAAAAACGCAATTTCACGCCATGTTAAAGTCATTCACGAAGGTCTTAGACGCTTTACATGCAGCTACTGTCCAAGACGTTTTGGTACGCGTAATTCTCAAGTGTGTCATGAACGTTTGCATACCGGCGAACGACCATTCAATTGTGAAATATGTAACCGGGGATTTGTCCAAATGGAAGGTCTAAGATCTCATATGAAAAACCACGATAAGAATTTACGCAAGCATGTGTGTAAATATTGTTCCCAACGTTTTATAACCTTAAAAAACCTGGTTAATCACGAGAGGAGGCATTTAGGCGATAAACCGCATATTTGTAACATATGCAGCAAAGGATTTCAAAATGACTTGGATTTGAAAAATCATCGAAGTAcgcatttaaaaaatacaatggAATCTAGTCATACATTAGCTGCAGGAAATGAATCGGAGACATTCTCTTAG
Protein Sequence: MSSFSHKNLQDLCRACLRTLKNNHLSTSENSNADFNSGISGLNSLLLPNLCKLFMFLTTYDASKEYDDFPKRLCEWCYGRLLDYDEFRKLAVRSTEILYEKWNSNKDDGSLIEGNTTDTKSPFLENVKSEGVFEENDDDKLLLPELANMPMYIKPESVFEAMDTQFILPSYLEEGEINRDQISHESYDTEEDADDEELLLPNGAANNSSPSITNGDGKVVLTKKDRFRKSLYCNVCNKQFYKQVYLDAHVRGAHLGQDKPFQCSSCSKAFTRYNQLFLHIKSKHIEMLFQCDYENCDASFALAIKLKTHRQVAHHSSEKRVNQNKQEEVQSVNMDHEMDHICYLCRRKYSSKRALREHIKRHKKIKEHVCQECGVAKVTRTELVTHMRTHTPNLEKFPCPQCPQVFNHKNAISRHVKVIHEGLRRFTCSYCPRRFGTRNSQVCHERLHTGERPFNCEICNRGFVQMEGLRSHMKNHDKNLRKHVCKYCSQRFITLKNLVNHERRHLGDKPHICNICSKGFQNDLDLKNHRSTHLKNTMESSHTLAAGNESETFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01138328;
90% Identity: -
80% Identity: -