Basic Information

Insect: Linnaemya vulpina
Gene Symbol: -
Assembly: GCA_963675445.1
Location: OY776277.1:91333618-91335462[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00076 0.091 14.5 4.4 3 23 302 323 300 323 0.95

2 8 0.00058 0.068 14.9 0.1 2 23 331 353 330 353 0.95

3 8 0.00082 0.097 14.4 4.2 1 23 372 395 372 395 0.97

4 8 2.6e-05 0.0031 19.1 2.1 3 23 421 441 418 441 0.98

5 8 2.7e-05 0.0032 19.0 1.0 1 23 447 469 447 469 0.96

6 8 1.8e-08 2.1e-06 29.1 1.3 1 23 475 497 475 497 0.98

7 8 1.5e-06 0.00018 23.0 2.8 1 23 503 525 503 525 0.99

8 8 0.00076 0.091 14.5 2.8 1 19 531 549 531 555 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00076	0.091	14.5	4.4	3	23	302	323	300	323	0.95
2	8	0.00058	0.068	14.9	0.1	2	23	331	353	330	353	0.95
3	8	0.00082	0.097	14.4	4.2	1	23	372	395	372	395	0.97
4	8	2.6e-05	0.0031	19.1	2.1	3	23	421	441	418	441	0.98
5	8	2.7e-05	0.0032	19.0	1.0	1	23	447	469	447	469	0.96
6	8	1.8e-08	2.1e-06	29.1	1.3	1	23	475	497	475	497	0.98
7	8	1.5e-06	0.00018	23.0	2.8	1	23	503	525	503	525	0.99
8	8	0.00076	0.091	14.5	2.8	1	19	531	549	531	555	0.94

Sequence Information

Coding Sequence: ATGCGTATCTGTTGTCTTTGCCGTAAGAAAGTAAAAGGTAACAATGtggcatattttaaaattcctaaaaatgaaCAAAGAAGAAAAGAGTGGAGTGAGATTTGCGGCATACAGCTAACAGTAAATGATGGTTTATGTGGCGACCACTTTTATTCCACGGATATGATAAAAGGAAATCGTAGTGTCTCACTAGCTCCAACTGCAATGCCCTTCGTGTGGCCTGTTAAAAGTGAGGAGAGCATATCATCAACAAATGTGAAAAACAACAGCGGTCAAGATACTGATATCATTAATATGTTACCTGAATATGTACACATCAATACATTCCATAAGGTAAACCAAAAATGTCGTTGTTGTTCAAATCCATCTTCGAATTTTACAGAACTTGATAGATACGTCAAGCTAAGCGAAGGAATGGAAAAAACTTACAAAGATCTCTTATATGAAGTAACTAATCTCAGTATAACGAGACGTAATGAAATCCTCTTGCCTCAGCAAATTTGCCTTAAATGTAGAGCTCAACTGAAAAGTTCTTATGAGTTCATACATAAAGCATGTCAAGTTACTGAACAATACCTTAAATTAACAGACCAGTCGAATATTcaagaagatataaaaaatattgaacattTGCAAGAATCACTTATAGAAATAGCTCCCATCATAGAAAATACTAACGAAGAATTAAAAGATGAACCATTAAATGTGGAATATGGAATggatataaaagaagaaaaattcgaATCTGAAGTATTTAAACTGCCATATTTGAACAATGAAATATCTCAAGAAGAGAGACAAAATTACAACACTGATAATAATTGCTCTGAAGATGAAAACAGTGACGtatcagaattattaaaaggcAGTGAGACGGATCTGAATGGGCCAATAGCTATGTGTTGTGATATATGTCATAAAGTCTACAGCAATGAAAAACTGCTTAAAGTTCATAAACGTTATACTCATCTTCCTGAAGAAAATAAGCTGCCTTGTCCTTTATGTAGTTACAAAGCCAGTCGAACTTCAGCCTTAAAAGTTCACATGCGCTTAGTTCATGGACATGATAAAgtaaacacatattttaagCCCGTACtagattcaaataaaaaatacccGTGCAGCTTATGTTCCCATTCATATGGTCGGAAAGATAGCCTTCGTAAACATTTTAGACGAAAACATCTGAATAAATCAACTAAAGAGGAAATTCCAAAAAAGATTAAATCTCCTAAACCTAAAGAAAAACAATGCTCTCTTTGCACCTACTGTGGGCAATCGTTTAACTCTAGAAGCGGTTTGAAGAGCCACGCACTTACACATACCGGAGAAAGACCCTTTTCATGTGAAATATGCAATAAGAAGTTTAAACGCGTAAAGGATTTGCAATTACATCGAGTTATACACAGTGATGAGAAACCCCATCAGTGTTCAGAATGTGGTAAAGCATTTAAACGTGCCGACAAATTAAAAGTTCATATGCGAGTACATTCCGAACTGCGACCCTATAAATGTAAAGAATGTGTAAagacttttaaatatcttagtGTATTACGAACCCATATGCGAACACATACCGGACAAACGCCTTTCAGTTGTAAAATTTGTGGCGAGACGTTCTCATTGAAAACATCATTAAATAATCATTGTTTAAAAAATgatcattaa
Protein Sequence: MRICCLCRKKVKGNNVAYFKIPKNEQRRKEWSEICGIQLTVNDGLCGDHFYSTDMIKGNRSVSLAPTAMPFVWPVKSEESISSTNVKNNSGQDTDIINMLPEYVHINTFHKVNQKCRCCSNPSSNFTELDRYVKLSEGMEKTYKDLLYEVTNLSITRRNEILLPQQICLKCRAQLKSSYEFIHKACQVTEQYLKLTDQSNIQEDIKNIEHLQESLIEIAPIIENTNEELKDEPLNVEYGMDIKEEKFESEVFKLPYLNNEISQEERQNYNTDNNCSEDENSDVSELLKGSETDLNGPIAMCCDICHKVYSNEKLLKVHKRYTHLPEENKLPCPLCSYKASRTSALKVHMRLVHGHDKVNTYFKPVLDSNKKYPCSLCSHSYGRKDSLRKHFRRKHLNKSTKEEIPKKIKSPKPKEKQCSLCTYCGQSFNSRSGLKSHALTHTGERPFSCEICNKKFKRVKDLQLHRVIHSDEKPHQCSECGKAFKRADKLKVHMRVHSELRPYKCKECVKTFKYLSVLRTHMRTHTGQTPFSCKICGETFSLKTSLNNHCLKNDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00900673; iTF_00899956; iTF_00899665;
90% Identity: iTF_00900673;
80% Identity: iTF_00900673;