Basic Information

Insect: Linnaemya vulpina
Gene Symbol: -
Assembly: GCA_963675445.1
Location: OY776277.1:91317607-91332000[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.6e-05 0.0042 18.7 3.9 2 23 368 390 367 390 0.95

2 10 0.12 14 7.6 0.6 2 23 433 455 432 455 0.96

3 10 0.38 45 6.0 3.3 1 23 462 485 462 485 0.97

4 10 0.0013 0.15 13.8 0.2 2 23 586 608 586 608 0.96

5 10 1.9e-05 0.0022 19.5 1.1 3 23 617 638 616 638 0.98

6 10 0.0034 0.4 12.5 3.1 1 23 658 680 658 681 0.95

7 10 3.4e-05 0.004 18.7 1.0 1 23 687 709 687 709 0.97

8 10 2.4e-05 0.0029 19.2 5.9 1 23 715 737 715 737 0.99

9 10 1.6e-07 1.9e-05 26.1 5.5 1 23 743 765 743 765 0.99

10 10 0.00065 0.077 14.7 0.2 2 22 771 791 770 794 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.6e-05	0.0042	18.7	3.9	2	23	368	390	367	390	0.95
2	10	0.12	14	7.6	0.6	2	23	433	455	432	455	0.96
3	10	0.38	45	6.0	3.3	1	23	462	485	462	485	0.97
4	10	0.0013	0.15	13.8	0.2	2	23	586	608	586	608	0.96
5	10	1.9e-05	0.0022	19.5	1.1	3	23	617	638	616	638	0.98
6	10	0.0034	0.4	12.5	3.1	1	23	658	680	658	681	0.95
7	10	3.4e-05	0.004	18.7	1.0	1	23	687	709	687	709	0.97
8	10	2.4e-05	0.0029	19.2	5.9	1	23	715	737	715	737	0.99
9	10	1.6e-07	1.9e-05	26.1	5.5	1	23	743	765	743	765	0.99
10	10	0.00065	0.077	14.7	0.2	2	22	771	791	770	794	0.88

Sequence Information

Coding Sequence: atgaatgaaatCTCAGTGCAAAAATGTAGGGCATGTCTTAAGCGCAGTAAAAAGTCCTTTCCGCTCACTAAATATGCAACAAGAGGTAATCCCAGAAAGACTTTCGGACATTTACTTCAGGAATGCGCAATGTTgaagTGCTCGCCTGACTATGAACATCTAATGCCTCAATTCTTATGTCTTACGTGTTGTCGAGGGTTGAGGCGCACATATGCCTTTATTAATCAAGCTCAATATTACAATAACAAACTTGTCAATATCATTTCTAAGAATCAGGATTGTTTGCAGGAAAGCACCATTGATCTACCAGAAAAAGAAGAGGATTTACCAAAGTATCATGAAATTAAAGTAGAAGAGAGTATGGGagatttttatacaatatacCAAAAAGAACCGAGTGCTTCAAAAGACGAATTCATATCAGAAGAACCGAATGTTCTGTATGAAGAATCAAAAGATAACACAATGGACTGCAATCACgaaattgaagaaataaaattagttgaaaAcgaAACCTCAGTGCAAAAATGTAGGACATGTCTTAAGCGCAGTACAAAATCCTTTCCGCTCACTAAATATTCAAGAAGACGTAATCCTAGAAAAACTTTCGGACAATTACTTCAGGAATGTGCAATGTTgaagTGCTCCCCTGACTATGAACATCTAATGCCTCAATTCTTATGTCTTACGTGTTGTCGTGAGTTGAGGAGTACATATGCCTTTATTAAACAAGCTCAATAttgcaataacaaaaatgtCAACATCATTTCTAAGAATGAGGATTGTCTGCAGGAAAACACCATTGATCTATCAGAAAAAGAAGAGGATTTACCAAAGTATCATGAAATTATAGTAGAAGAGAGTATGGGagatttttatacaatatacCAAAAAGAACCGAGTGCTTCAAAAGACGAATTAATATCAGAAGAACCGAATGTTCTGCATGAAGAATCAGAAGATAATACAATGGACTGCAATCACGAAactgaagaaataaaattagttgaCAATGAGATAAGTGTTTCGAACAATCGGCCATTTGAAACTTCTTCAGAGtcatataataatacaatagtTGACCACTTGTTAACTAAATGCGCCTGCCCTATGTGCAGAAAGCATTTAAGCACACGttctaatttaattaaacatatgCGTGTTCAACATAACATTGAAAATCCTTCTAAATTGCTTGACAAATCAAAACCCCGGCAAAAGTATGTATTTGATTGTAAAtgtgtttttctatttatacgcattaatatatgtatACAGCAGAaggataaaattataaaatgccGTTCTTGTGATTATACAGCTAAAACTTCTGCGGCTTTCGATTATCACATTCGATCAAAGCATGGCACTGAACAAGACAAATTCAAATGTAATTTCTGTACACGCTTGTTCTTAAACAAACTTTACTTGTTAAGGCATGTGAAAAAGTCTCACaaggaaattataaaatctCTTAAAGCGGAAACCGAAAATAAAAGTGAAGCCATAAGTAACACTACTGTTACTTTGACTGCATCTAAATTGGAAACAAAAGATTTGAGACACGAAAATGAAGAATCTTCAAGTGATGATTATGTtcctttatttcaaaaaagggATAAAGCATATTCAACGTTAAATTCAAACAATGAAATGGGAGAGTGTGCAGATCAGTTTAGTGATGAAGAGTTTATAAGAAACAtgttgaatatgaaaaaaaggCAGACAAAATCATCGAGTAAATCTTTACCCAGGCGTTGTGAGGAATGtggcaatatatataaaaattataaagcacTTTATGCTCATCAACGAAATGTTCACATAAGTGAAGATAAATATAGTTTATGTTCATATTGCGGAAAGAAATACAAACGTGAAACTGATCTTAGGATTCATATTCAAAAGacacatatttcaaaaaattccgCCGAAATTATAAATCAACCAGCTAAAGTAAGAGAAAAACGATTTATGTGCACGGAATGTTCCTACGTTTGTGCAACAAAGACCGTTCTTAATATTCACATTAATCGTCATCATACAGGCGAAAAACCTTATAAATGTGATATATGTTTTAAATCGTTCATAGTGTCCTATGATTTGAAAATTCACCGTTATATACATACCGGAGAACGGCCTTATAAATGTTCGATTTGTTGGAAACCATTTCGTGATCATTCTCACATGCTAAAACACAAACGCACACATAGCAGTGAACCGCCTTTCAAGTGCAAAGAATGCGGCAAATGTTTTACACAGTCGTATAATTTGTCGGTGCACAAACGAACACATCtgaaagagaaattaaattgtGCTGTATGTGGTAAAGTATTTCAAAATAGATATTTACTAAATATGCATCGTATAAAAGAAGATCATCATGACGATATATAA
Protein Sequence: MNEISVQKCRACLKRSKKSFPLTKYATRGNPRKTFGHLLQECAMLKCSPDYEHLMPQFLCLTCCRGLRRTYAFINQAQYYNNKLVNIISKNQDCLQESTIDLPEKEEDLPKYHEIKVEESMGDFYTIYQKEPSASKDEFISEEPNVLYEESKDNTMDCNHEIEEIKLVENETSVQKCRTCLKRSTKSFPLTKYSRRRNPRKTFGQLLQECAMLKCSPDYEHLMPQFLCLTCCRELRSTYAFIKQAQYCNNKNVNIISKNEDCLQENTIDLSEKEEDLPKYHEIIVEESMGDFYTIYQKEPSASKDELISEEPNVLHEESEDNTMDCNHETEEIKLVDNEISVSNNRPFETSSESYNNTIVDHLLTKCACPMCRKHLSTRSNLIKHMRVQHNIENPSKLLDKSKPRQKYVFDCKCVFLFIRINICIQQKDKIIKCRSCDYTAKTSAAFDYHIRSKHGTEQDKFKCNFCTRLFLNKLYLLRHVKKSHKEIIKSLKAETENKSEAISNTTVTLTASKLETKDLRHENEESSSDDYVPLFQKRDKAYSTLNSNNEMGECADQFSDEEFIRNMLNMKKRQTKSSSKSLPRRCEECGNIYKNYKALYAHQRNVHISEDKYSLCSYCGKKYKRETDLRIHIQKTHISKNSAEIINQPAKVREKRFMCTECSYVCATKTVLNIHINRHHTGEKPYKCDICFKSFIVSYDLKIHRYIHTGERPYKCSICWKPFRDHSHMLKHKRTHSSEPPFKCKECGKCFTQSYNLSVHKRTHLKEKLNCAVCGKVFQNRYLLNMHRIKEDHHDDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -