Basic Information

Insect: Linnaemya vulpina
Gene Symbol: -
Assembly: GCA_963675445.1
Location: OY776277.1:91189727-91191597[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 8.5 1e+03 1.7 0.1 1 15 58 72 58 75 0.79

2 9 2e-06 0.00024 22.6 1.0 2 23 252 274 251 274 0.96

3 9 0.0014 0.16 13.7 7.9 2 23 282 304 281 304 0.96

4 9 7e-05 0.0083 17.7 3.1 1 23 322 345 322 345 0.97

5 9 2.8e-06 0.00033 22.2 1.9 3 23 386 406 385 406 0.99

6 9 0.0011 0.13 14.0 1.4 1 23 412 434 412 434 0.98

7 9 9.5e-07 0.00011 23.6 1.5 1 23 440 462 440 462 0.97

8 9 3.6e-05 0.0042 18.7 4.4 1 23 468 490 468 490 0.99

9 9 0.0041 0.48 12.2 0.7 1 23 496 520 496 520 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	8.5	1e+03	1.7	0.1	1	15	58	72	58	75	0.79
2	9	2e-06	0.00024	22.6	1.0	2	23	252	274	251	274	0.96
3	9	0.0014	0.16	13.7	7.9	2	23	282	304	281	304	0.96
4	9	7e-05	0.0083	17.7	3.1	1	23	322	345	322	345	0.97
5	9	2.8e-06	0.00033	22.2	1.9	3	23	386	406	385	406	0.99
6	9	0.0011	0.13	14.0	1.4	1	23	412	434	412	434	0.98
7	9	9.5e-07	0.00011	23.6	1.5	1	23	440	462	440	462	0.97
8	9	3.6e-05	0.0042	18.7	4.4	1	23	468	490	468	490	0.99
9	9	0.0041	0.48	12.2	0.7	1	23	496	520	496	520	0.88

Sequence Information

Coding Sequence: ATGAAATCTGAAATAACTCAGTGCCGGACGTGTTACAATGCCACAAAAGGCTTACGACTCCTTACCATGCTAGCAAAATGTGGTGGCAAACTCGAAGGGAAATCATATGCTGAACTTATAATTGAAGTAACCAATATAAATATAATGGAAGATTCTAAAGAATTGCCAAAGTTTATATGCGACGGCTGTTCGCGCAAGTTAAAAGTGGCTTATGCATTTATTCAACAGACTCATAAAGTTAATGAACGACTTATGGTAATGCTTGCCGATCAAGAGGATTCAGATAAACATTCAGATTGTTTGCAAGAAGCCCAAGTCGACATTCAATCATGCTTGGAAATTAAAATGGAGCATGATAATACTATTGCAGACAATGAAACTAATGTTCAAAAGGAAATGGAGGAAAGGAAACAGTTTTTACAAAGCAACTTATCAGACAAGGATGTAATGTCTAGAAAGACTGACGTGGAAGTGGAAAATATTGAACAagCTGGCTTGAAGAAAAAGGCTAACAATATAAGTTCAGCAAAATATCCTCAGATAACAAATGTAGCAGGAATTTTGCAGTCGGAATTCAATGAGAGTGACAATATTGAACTCGGCAACGATCGGGAGGAATCTGAAATGGAATGGCAAAGAGATATAGAAGGCGACTCACAAAACGATAAAAAAGAAGATAAgccatttatatcaaaatacaGATTATCTGAAGAAGCATTGATAATGCCGAGTGAAGATGATGATGTAGCCGTACCGTGTAGGCaatgtaacaaaatatttagcaaTTCTAAAGCCTTAATGCGTCACCAACGTACTAGTCATATACCAGAAGATCAAAAATGTACTTGCCCTCTGTGTTTTCGTAGATTTTCACGATCTTGTAATATGTATACACACATGCGTACGTTTCACGGTCCCGAGACTGTACCACTAATACGTAAGCCTTTAACACAAGAGAGAATATTTCAGTGTGAAAAATGTCCTAGGAAttacacaaaaaagaaatatctcaagatacatataaaaaataagcatAGTCAAGAAAATGAGAGCAGAGAAAAGGATAATGATAATTTTAAGGAAGATATAAAGATTCTGGATGACGAAGTACTTCCAAAACCAAATAAACCTAAAAGGTATGAGGTTAGTTCTCTATGTTCCATATGTGGTAGTTCATTTTCTAGTAAAACTCATCTCATTGTACACATGCGACGTCATACGGGTGAACGTCCTTTTAAATGTGATCTTTGTGACCGTGCCTACCCGCGTATATCTGAGCTGACCTGTCATCGACGTATACATACCGGCGAAAAACCGTTTGCATGTAAAATATGTGGTAAAACTTTTCGAGTTTCTAGTAAAATGACAACACATTTACGATCTCATACTGATATCAGGCCATATAAATGTACACAATGCGAGAGAAGCTTTAAACACTCTAAAGATTTAAGTATACATTTTCGCATACACACTGGCGAACGGCCTTATAGTTGTATTGTATGCGGCAGCACGTTTACGCAAAGCAATACTCTCAAATCCCATCGTATGAAACTTGGTCACATGGGTAgtgctgtaaaaaatataaaagatttagTTTAA
Protein Sequence: MKSEITQCRTCYNATKGLRLLTMLAKCGGKLEGKSYAELIIEVTNINIMEDSKELPKFICDGCSRKLKVAYAFIQQTHKVNERLMVMLADQEDSDKHSDCLQEAQVDIQSCLEIKMEHDNTIADNETNVQKEMEERKQFLQSNLSDKDVMSRKTDVEVENIEQAGLKKKANNISSAKYPQITNVAGILQSEFNESDNIELGNDREESEMEWQRDIEGDSQNDKKEDKPFISKYRLSEEALIMPSEDDDVAVPCRQCNKIFSNSKALMRHQRTSHIPEDQKCTCPLCFRRFSRSCNMYTHMRTFHGPETVPLIRKPLTQERIFQCEKCPRNYTKKKYLKIHIKNKHSQENESREKDNDNFKEDIKILDDEVLPKPNKPKRYEVSSLCSICGSSFSSKTHLIVHMRRHTGERPFKCDLCDRAYPRISELTCHRRIHTGEKPFACKICGKTFRVSSKMTTHLRSHTDIRPYKCTQCERSFKHSKDLSIHFRIHTGERPYSCIVCGSTFTQSNTLKSHRMKLGHMGSAVKNIKDLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -