Basic Information

Insect: Linnaemya vulpina
Gene Symbol: -
Assembly: GCA_963675445.1
Location: OY776276.1:4318725-4322915[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.016 1.9 10.3 0.1 3 23 30 50 28 50 0.96

2 16 0.0083 0.99 11.2 2.0 1 23 56 79 56 79 0.95

3 16 1.2 1.4e+02 4.4 0.2 3 23 84 106 82 106 0.86

4 16 0.0022 0.27 13.0 0.2 1 22 114 135 114 135 0.95

5 16 5e-06 0.00059 21.4 0.9 1 23 143 165 143 165 0.97

6 16 6.8e-05 0.008 17.8 4.4 1 23 171 193 171 193 0.98

7 16 8.3e-05 0.0099 17.5 1.3 1 23 199 221 199 221 0.95

8 16 1.3 1.5e+02 4.4 0.3 2 23 669 691 668 691 0.95

9 16 0.7 83 5.2 0.3 1 10 715 724 715 737 0.79

10 16 0.41 49 5.9 3.1 1 23 745 769 745 769 0.92

11 16 4.6 5.5e+02 2.6 0.9 3 23 775 796 775 796 0.94

12 16 0.0076 0.9 11.3 0.3 2 21 809 828 808 829 0.93

13 16 0.00023 0.027 16.1 0.9 1 23 837 859 837 859 0.98

14 16 7.1e-06 0.00084 20.9 1.8 1 23 865 888 865 888 0.97

15 16 7.4e-05 0.0088 17.7 1.3 1 23 894 916 894 916 0.98

16 16 0.00047 0.056 15.1 1.1 1 21 922 942 922 943 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.016	1.9	10.3	0.1	3	23	30	50	28	50	0.96
2	16	0.0083	0.99	11.2	2.0	1	23	56	79	56	79	0.95
3	16	1.2	1.4e+02	4.4	0.2	3	23	84	106	82	106	0.86
4	16	0.0022	0.27	13.0	0.2	1	22	114	135	114	135	0.95
5	16	5e-06	0.00059	21.4	0.9	1	23	143	165	143	165	0.97
6	16	6.8e-05	0.008	17.8	4.4	1	23	171	193	171	193	0.98
7	16	8.3e-05	0.0099	17.5	1.3	1	23	199	221	199	221	0.95
8	16	1.3	1.5e+02	4.4	0.3	2	23	669	691	668	691	0.95
9	16	0.7	83	5.2	0.3	1	10	715	724	715	737	0.79
10	16	0.41	49	5.9	3.1	1	23	745	769	745	769	0.92
11	16	4.6	5.5e+02	2.6	0.9	3	23	775	796	775	796	0.94
12	16	0.0076	0.9	11.3	0.3	2	21	809	828	808	829	0.93
13	16	0.00023	0.027	16.1	0.9	1	23	837	859	837	859	0.98
14	16	7.1e-06	0.00084	20.9	1.8	1	23	865	888	865	888	0.97
15	16	7.4e-05	0.0088	17.7	1.3	1	23	894	916	894	916	0.98
16	16	0.00047	0.056	15.1	1.1	1	21	922	942	922	943	0.95

Sequence Information

Coding Sequence: atggCCGAAACTAACGATGCTTCTACATCATCTGCAGCTGCGGATATGCTGGTTAAACTTTCTACGGACGGTGTGCCGAAACTATTTTGTCCGGTTTGCAACAAAGCCTTAGTATCACTGGCTGGATATGTAAAGCATGTTAAAAAACATGAACCACCTGGTGGGTTCATATGCCGCTATTGTGAAGCTCGTTTCTGCTCTGATGAGGAACTGAAAAAACATCGAGAATCAGAACACACCACTATTGCCTGTCGCTTATGCAAAGATACCACCTTTACCAATGAAAATGATTATCGGGCTCATATTAGTGACATCCACCAGGGAGTGGATAgagaaatatttacttgtaacaAGTGTGGCGCTACGTACAAAACAATTGATCCCTACCGTCGTCATATAGAAACTGAATGTGGTCGTATTAAACCATACAAATGTGATAAATGTCCTATGGCATTTGTaacgaaatataatttaaaacagcATTTGGATAATCATTCGGGAGAGTTAAAGTTTTGTTGCAGCTATTGCGGACGTAACTTTAAGCAAAAATCTCGATTGGTAGAACATGAAAGAACTCATACAGGAGAGAAACCCTATAAATGTGATgtCTGTGGGAAAAGTTTTTCCCACCGAGAAAGTATTGTCACACATTCTTCCATTCATACTGGCATTCGTTTGGTAGAATGTAAGTGTTGTTCATCACGATTTTCCTGCTATTCCAATCTTATCAAACACCGGCGAAATCGTCCCGATACTTGTGGCTTACCTGTATTTGATCCACCGCGCAATCGTGTTCGTAAACATTCTTCAAGAattcCAGCCACTTTAAATCCTACTTCCGAAATCAAAGTGGtaaatgtcaataaaataatcaaacccGGTGATCAGGTTAAAGCGGCaactataaaaaaagattcTCCTGAAAAACCATTAAGAATGAAACCAACTGCTCGAAAACGCACTGGAGGCGCACCAACTCCACCTACTCTACGCAAAAGAACTATTAGAAAACCTATTAAGCAATTCGATGTTAAAGAAGATGAAGATGATCTTAAAATAGAAATGTTGGATGATGCAGACAGTATTCCTCTCAAGCCGAAAGCGAAGACGGAAATAAAACTTATTGAAGAAAATAGTATACCACCGCCTCTTGAAGTCGTTATGAGCGATAAGCCTCCGAAAAGTGACACTATAACTCAATGGTCTGATGATAGTGAGGACGAATATGTGCCCGATTTTGAAGTGGGCGAATCCGATTCGGATGAAGAAGAGTATATAGCTCAAACTGCATTACCGGCTTCTTCTATCAAACAAGAAAACTATGGCGATACTAATGATAATGAGGTAGCGGTTACCACTAATATTCAAATAGAGCCTTTGGCTGATTTCGAATACAATCGTATGGACTCCTATAGTGCTGATGTAAAATATGAAGATGAGGAAGATAATTTGTTTGATGAAAAGGATCGTATATTGGAACATCTGTTAAATGAGAATGATTATAGCCAATTGACCGAGTCAGGACAAGAAAGGTATAATAGCCGGCCAAAATCAAAAGGGAAACGTAGGGCGATTACGAAAAATTATAGGCCAGATTGtgatgatattttaaaagaagcagAAGTCGCTTATATCAAATTTGAAGAGAGTGACGATCACGATGATGACCTAGAAGatattttggaagaaaaatatAGTgtGGAGGATGAGATTAAGAAATGTTACATTTTACTAGAAGATATTTCCCATTGTTTTCCTCTGCTGAAAGAAACCTCAACGGTCAAAATACCGCGCAATTTTCAGCCATTCTTTTCAAaatcgaaaacaattaaaaaatttattaaaaaacgcGGCAAATATCGGCCTAGACATTCTAAAATCGTTAAAAAAGAACCCGGATCTGATGAAGACACGAAGGCTGGTAAATCGTACCGCTTAGCTTCTATATCGGCTAAGCAGCTACGAGAACGTATGAAGCTTTTGAATAAGAGGGATAAATGTTGGCAGTGTCAAGactgtataaaaatatactatATGCGCAAACCTTATGAAAAGCATTTAAGAGAAGACCACAAAAAGTctgaagattttattaaagaagtttttaaaaatgatttggaCGATGTCTCGACTGAGGACGTCTTTAAATGTAAcatatgcaataaaatttatttgatggaaAAACGTCTATTATCCCATATACCCAAGCATGGACCGGACGGCACTTTGATACACAAATGCCCTTGTTATTGTACTCTGTATTTTACTACGCGTGAAGAGGCCACCGCTCATGCCCAGGATAAACACAAAGACCTTTTGTGGTGTGAAATATGTGAGAAATATATGACAGGTTGTGATGCTCTTAAATCGCACAAAGCGCGCATACATGGCGGTAATAAAGACTATAAAAATTCTCGTAACTTAGTGTGCATGAAatgtggaaagaaatttatgggTCGTACTCAATTAACCGATCATGAACGTTCCGATTGTGGTCGTTTGCCTTTGTATCAGTGTCAAGAATGCGGAAAATGTCTAACGACAGCGGGTATACTCAAAACACACATGTTGTTGCATAATGATGCACGGCCCTATCAGTGTGATAAATGCGGAAAAACTTTCAAGATTAAGGCTCAATATAAAACTCATATTAAATATGCCCATACGGACGAAAAGCGGTTCAAATGTCATctgtgtCCCAAAGAGTACCCATATCGTGAAAGTTTGTTGACCCATATGTCGGTGCACACAGGTATTAAACGTTTTATGTGCAATGGTTGTGGCAAACGGTTCACCTGTGTATCCAATCTACAAGCTCATCGCAAAGTTCAGGCAGAAACGTGCGGTCTTTTGCCACTTAATGCAAAAGCCACCCAATATATGGGAGTTCAAAAAGGCAATCTTTTAATGGGAGCAAAACCAGAACCGGGTTTAGACTATGTGGAAACTAGAACGTTTGTAGCTAAAGACGTAATTACACATGACTTGCCCATGGCCCAGGAAATctatcaaaatagaaataatttgcaACAGGATCCATCGCTAAGCGATGGTATTCCTTTAAACTATGCAACTCCGGGATCTGAAATTATACTTATGTATAATAGAGATTAG
Protein Sequence: MAETNDASTSSAAADMLVKLSTDGVPKLFCPVCNKALVSLAGYVKHVKKHEPPGGFICRYCEARFCSDEELKKHRESEHTTIACRLCKDTTFTNENDYRAHISDIHQGVDREIFTCNKCGATYKTIDPYRRHIETECGRIKPYKCDKCPMAFVTKYNLKQHLDNHSGELKFCCSYCGRNFKQKSRLVEHERTHTGEKPYKCDVCGKSFSHRESIVTHSSIHTGIRLVECKCCSSRFSCYSNLIKHRRNRPDTCGLPVFDPPRNRVRKHSSRIPATLNPTSEIKVVNVNKIIKPGDQVKAATIKKDSPEKPLRMKPTARKRTGGAPTPPTLRKRTIRKPIKQFDVKEDEDDLKIEMLDDADSIPLKPKAKTEIKLIEENSIPPPLEVVMSDKPPKSDTITQWSDDSEDEYVPDFEVGESDSDEEEYIAQTALPASSIKQENYGDTNDNEVAVTTNIQIEPLADFEYNRMDSYSADVKYEDEEDNLFDEKDRILEHLLNENDYSQLTESGQERYNSRPKSKGKRRAITKNYRPDCDDILKEAEVAYIKFEESDDHDDDLEDILEEKYSVEDEIKKCYILLEDISHCFPLLKETSTVKIPRNFQPFFSKSKTIKKFIKKRGKYRPRHSKIVKKEPGSDEDTKAGKSYRLASISAKQLRERMKLLNKRDKCWQCQDCIKIYYMRKPYEKHLREDHKKSEDFIKEVFKNDLDDVSTEDVFKCNICNKIYLMEKRLLSHIPKHGPDGTLIHKCPCYCTLYFTTREEATAHAQDKHKDLLWCEICEKYMTGCDALKSHKARIHGGNKDYKNSRNLVCMKCGKKFMGRTQLTDHERSDCGRLPLYQCQECGKCLTTAGILKTHMLLHNDARPYQCDKCGKTFKIKAQYKTHIKYAHTDEKRFKCHLCPKEYPYRESLLTHMSVHTGIKRFMCNGCGKRFTCVSNLQAHRKVQAETCGLLPLNAKATQYMGVQKGNLLMGAKPEPGLDYVETRTFVAKDVITHDLPMAQEIYQNRNNLQQDPSLSDGIPLNYATPGSEIILMYNRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00435810;
90% Identity: iTF_00899928;
80% Identity: -