Basic Information

Insect: Linnaemya vulpina
Gene Symbol: -
Assembly: GCA_963675445.1
Location: OY776280.1:71996647-71997909[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.001 0.12 14.1 0.2 2 23 157 179 156 179 0.95

2 8 9.6e-05 0.011 17.3 0.4 1 23 185 208 185 208 0.96

3 8 4.3e-08 5.1e-06 27.8 2.7 1 23 211 233 211 233 0.97

4 8 3.8e-06 0.00046 21.7 0.2 3 23 241 263 239 263 0.89

5 8 0.00031 0.036 15.7 4.8 1 23 268 290 268 290 0.97

6 8 4.4e-05 0.0052 18.4 0.2 1 23 296 318 296 318 0.97

7 8 0.0001 0.012 17.2 4.8 1 23 324 346 324 346 0.95

8 8 2.5e-06 0.0003 22.3 0.0 1 23 352 374 352 374 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.001	0.12	14.1	0.2	2	23	157	179	156	179	0.95
2	8	9.6e-05	0.011	17.3	0.4	1	23	185	208	185	208	0.96
3	8	4.3e-08	5.1e-06	27.8	2.7	1	23	211	233	211	233	0.97
4	8	3.8e-06	0.00046	21.7	0.2	3	23	241	263	239	263	0.89
5	8	0.00031	0.036	15.7	4.8	1	23	268	290	268	290	0.97
6	8	4.4e-05	0.0052	18.4	0.2	1	23	296	318	296	318	0.97
7	8	0.0001	0.012	17.2	4.8	1	23	324	346	324	346	0.95
8	8	2.5e-06	0.0003	22.3	0.0	1	23	352	374	352	374	0.98

Sequence Information

Coding Sequence: atgttaaaaaattgctttttgccTGTTAATTATAACAAACCATTATCCCAAACATGTGGAGAAATTGTTTGCGAAAATCTTGaggaatttataataaattgtaaGTTGTGTAAAATCAAGATTTTTGAGTTTGAAGAATTCgtacaacattttaaaaatgctcACCTGCATGAAAGCAATGAAAACCATTCGGACAAGACCGTTGTGCTAAATAGTCAGGAGAATGAAGAATACAATAAACGCATTATCAAATTTGAAATAACAGATCAAACCAAatgtgaaacaaataaaaatgaacatGCTGAGGGCACTGTGGAAAATGAAGAGTTTCCGTGGGATGTAGATAATAACGCTTATTGTGATGACTATAAAGATGACGAAAATACTGACGATGAAGAGGAAGAGCAAGAGGCTGATGAAGAACAATGTAAAAGTATAATGAAGAAgacAAGAAAACCAAAAGAGTTGTCATGTGaaatttgtagcaaaaaatACGCCGATTCAAGGCGTTTGCAGCTGCATGTAAAGATAGTGCACTTACGAGAAAAACCTTATAAATGTTCTATGTGTGATCAGGCTTTTGCTGAAGAGCGGTCTCTTAAAAATCATATAGGACGCAAACACACTGGATATGATTGCCCAGAGtgccataaaaattttacaacaaatcgCAATCTTAAACGGCATATGTTAATACATTTAGATAAAAAAGAATTCTTATGTGCTGAGGAGAATTGCGGTAAAGCTTTTGCCACGAAAGGACAACTTAAGGATCATATGCGTTATCATACTAGTGAGATGTTTATATGTGAAGAATGTGGGTACAAATGCAGACAGCGTGAATCATTGACTGTACACAAACGCCATCATACTGGAGAGAAACCATTTGCCTGTGAACTTTGTGACCGCCGGTTCGGTTCCAAACCCTTACTTACTGAACACATGGCTAAACATGAAACAGAACGTAAACATGTGTGTGATGTTTGTGGCAAAAGTTTCAATCGTCCTAAAGCACTATATCATCACAAACATTTACATTTGGGTATAAAGAAATTCGTATGTAAGATTTGCGGACAAGCATTCGCTCAGGCAGCTGGGCTTTCGGCTCACACGAGAAAACATAGAGACGACGGGGGAGCATCCTTTACTACAGATACTCCAACACAGAATAATGCTAATATAATGAATGTGTTTTAtactttttga
Protein Sequence: MLKNCFLPVNYNKPLSQTCGEIVCENLEEFIINCKLCKIKIFEFEEFVQHFKNAHLHESNENHSDKTVVLNSQENEEYNKRIIKFEITDQTKCETNKNEHAEGTVENEEFPWDVDNNAYCDDYKDDENTDDEEEEQEADEEQCKSIMKKTRKPKELSCEICSKKYADSRRLQLHVKIVHLREKPYKCSMCDQAFAEERSLKNHIGRKHTGYDCPECHKNFTTNRNLKRHMLIHLDKKEFLCAEENCGKAFATKGQLKDHMRYHTSEMFICEECGYKCRQRESLTVHKRHHTGEKPFACELCDRRFGSKPLLTEHMAKHETERKHVCDVCGKSFNRPKALYHHKHLHLGIKKFVCKICGQAFAQAAGLSAHTRKHRDDGGASFTTDTPTQNNANIMNVFYTF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00742140;
90% Identity: -
80% Identity: -