Lvul028908.2
Basic Information
- Insect
- Linnaemya vulpina
- Gene Symbol
- ZNF212
- Assembly
- GCA_963675445.1
- Location
- OY776280.1:12060207-12062587[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.2 23 6.9 1.2 2 23 114 136 113 136 0.91 2 15 0.11 13 7.7 1.8 1 23 142 165 142 165 0.96 3 15 0.0011 0.13 14.0 0.3 2 23 240 262 239 262 0.94 4 15 0.099 12 7.8 3.9 1 23 268 291 268 291 0.98 5 15 0.00021 0.025 16.3 4.2 1 23 298 320 298 320 0.98 6 15 1.6e-06 0.00019 22.9 2.5 1 23 326 348 326 348 0.98 7 15 0.0064 0.76 11.6 5.7 1 23 428 450 428 451 0.95 8 15 8.8 1e+03 1.7 3.2 2 23 530 552 530 552 0.95 9 15 0.00096 0.11 14.2 0.6 1 22 558 579 558 582 0.91 10 15 1.9e-06 0.00023 22.7 0.8 3 23 589 609 588 609 0.97 11 15 0.00011 0.012 17.2 3.8 1 23 615 638 615 638 0.93 12 15 0.015 1.8 10.4 3.1 1 23 647 669 647 669 0.96 13 15 8.5e-07 0.0001 23.8 1.6 1 23 675 697 675 697 0.98 14 15 0.00015 0.018 16.7 0.9 2 23 704 725 703 725 0.97 15 15 1.1e-05 0.0012 20.3 1.8 1 23 731 753 731 753 0.95
Sequence Information
- Coding Sequence
- atggcTCAATGCATTCGTATGGATACGGATAATAAACAACGTAATATaggaaataaatcaattgcatcGCCTATGCGATGTCGTGATACATCGAGACCTCCAAGCTACCAAGCAAAAAACGAAGATATCGATTGCTTAGAACATGCACATCAGATGGATGAAAATGTAGATAAACAAGATCTCGGTTTGAATAATGGTGAAAATTTTACAGAGGAAGATGATACGTATTGGGATAGTAATGTTATGGATGTACTGCAAGTAGAATATAATGACTTGTCTAGTCCAACATCGCGTAGCAAatccataaattttaaaagaaaaatttacccCATTGAAAGTTCATGTGCTGTTTGTAATaagATATTTTCTTGCCAAAGGGATTTTGCAAAACATGCCCAAGAAGACCATCCTAATGCAAAAGCTTTTAGATGTCAGTACTGTCCTGCGTTATTTTCGAAGTTCAAATCGGTTACAGCACATTTCAACAGGACTCATACTGATTCAGATAGTCGAAGAAGTCGTGCCGTATCGAACAATCCGATAAGTCAAGACTACTCGGATAAAAGAAGAGGTCATACAGACTACGATAATCATGTTGAGCGGGATAATCGTAGAAGTTTTGTCGACTCAGATAAATCTGACTTGCGGAATTATGAAAATCTGGAGGAAGATGATATTTTATCACATAAAAGGGGCAAATTTTATGCAGTTGAGGATAAATGTGCTGTTTGCGAAGAGaaattttcATTCCAAAGAGATCTTATTAAGCACACACAAGAAGTTCATCCTAATGAAAAAGCATTTAAGTGTCTCTATTGtacaacattattttcaaaattgaaatcTGTTACTACTCATTATAAAAGAAGTCATTCCAAGTTAATGAAGTCTTATAGTTGTGAGTACTGTGACATGACATTTTTTACCCACTTTCTTTTGGTGCGTCACACACGATCTCACACAGAACAACGCCCATTTGTTTGCACAGAGTGTAGTAAGAcctataaatataaaagaaatttgttagtTCATATGAAAACACATTCGAAAAATGGTGATTCTTCTAATAGTAATCTTGAAGAACATTATAATGACGTCGACGATGAACAATATACATTTTCTGGAGATGACTACTGCAAAAATGACGAAGAAAATATAGTAACTGGAAATGAGTATCGTGAGACCGATATCCGAAACTTGCATTCACAAAACAATGAGGTTATAGATATTTCTGAAGATACATCAGACGAAGgagtttccaataaaaaaaagcagTACCAGTTTAAGTGCAACGAGTGTCCGAAAGCTTACAAGTATAACAAAGATTTGAAATTCCATAAAAAGAAGCACCACAGTAATCAAATAACAGAAACCATAACTATAGATGATGATGATACAACGACAAATGATCAATACACTAATTTCTTTAATAGTACTTATTTTATAATAGATGAATTAAATACGGATGTTGAACATGCTGAAGATTTAGGCGATGATATATATGCTACAGTAAATTATTCAGACGATTATACTTATGAGGATTCTGGGCCAATGGAAACACAACAGTCATCAGATGTTACACAAAATGAATGTGGTATCTGTATGAAAGTATTCAAATGTCAACAGGCAGTGGCCAAGCATTTGCAGCGATGTCATGTAGAAGTTGAGTTCTTTAAATGTCCTTATTGTGATGACAATTTCTACAGCTTGGACTCTTTATCACAGCACATAAATATAAGAAATCATCcacaaaaacgaaatatttgcgaaatgtgtcttaagtcttttgatcGCAGAAGTGATTTGAGGCGACATATACGAATACATACCGATGAGCGTCCTTATGCGTGCAATATTTGTTACAAGACCTTTAAACAGACTAATCATTTAAAACGACACAAAGATATAAATCATGATGCCGTAATCGATGTGGTAAAATTTATATGTCATCTTTGTCATAAAAGCTTTTTGCTTGAAGAAACACTAAAACGACACATAAGTGCACATGCTAGAGAAGCAAACTATGCCTGCTCAATGTGTGATAAAACGTTCAAAACAAGATATGATTGGCAAAGACATCAAGAAACTCATagttcaagaaaatatttaacatgcgaattttgtttaaaatcgtTTGACAACTTACAAAATCTAAACCTTCATCTAAATACACATACAGGCGatcgaaaatttttatgtacaatCTGTGGTAAAGCCTATAAGGAGAAAAGTCATTTAGTTAATCACCGAAAAATACATAACTAA
- Protein Sequence
- MAQCIRMDTDNKQRNIGNKSIASPMRCRDTSRPPSYQAKNEDIDCLEHAHQMDENVDKQDLGLNNGENFTEEDDTYWDSNVMDVLQVEYNDLSSPTSRSKSINFKRKIYPIESSCAVCNKIFSCQRDFAKHAQEDHPNAKAFRCQYCPALFSKFKSVTAHFNRTHTDSDSRRSRAVSNNPISQDYSDKRRGHTDYDNHVERDNRRSFVDSDKSDLRNYENLEEDDILSHKRGKFYAVEDKCAVCEEKFSFQRDLIKHTQEVHPNEKAFKCLYCTTLFSKLKSVTTHYKRSHSKLMKSYSCEYCDMTFFTHFLLVRHTRSHTEQRPFVCTECSKTYKYKRNLLVHMKTHSKNGDSSNSNLEEHYNDVDDEQYTFSGDDYCKNDEENIVTGNEYRETDIRNLHSQNNEVIDISEDTSDEGVSNKKKQYQFKCNECPKAYKYNKDLKFHKKKHHSNQITETITIDDDDTTTNDQYTNFFNSTYFIIDELNTDVEHAEDLGDDIYATVNYSDDYTYEDSGPMETQQSSDVTQNECGICMKVFKCQQAVAKHLQRCHVEVEFFKCPYCDDNFYSLDSLSQHINIRNHPQKRNICEMCLKSFDRRSDLRRHIRIHTDERPYACNICYKTFKQTNHLKRHKDINHDAVIDVVKFICHLCHKSFLLEETLKRHISAHAREANYACSMCDKTFKTRYDWQRHQETHSSRKYLTCEFCLKSFDNLQNLNLHLNTHTGDRKFLCTICGKAYKEKSHLVNHRKIHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -