Basic Information

Insect: Linnaemya vulpina
Gene Symbol: -
Assembly: GCA_963675445.1
Location: OY776277.1:39570406-39574414[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00025 0.029 16.0 5.0 2 23 128 149 127 149 0.98

2 9 3.3e-06 0.0004 21.9 3.0 1 23 155 177 155 177 0.99

3 9 1.5e-07 1.8e-05 26.1 1.8 1 23 183 205 183 205 0.99

4 9 1.2e-05 0.0014 20.2 2.5 1 23 308 330 308 330 0.98

5 9 5.9e-06 0.0007 21.1 0.9 1 23 336 358 336 358 0.98

6 9 0.00011 0.013 17.1 3.6 1 23 364 386 364 386 0.98

7 9 9.6e-07 0.00011 23.6 2.7 1 23 525 547 525 547 0.98

8 9 3e-05 0.0036 18.9 3.5 1 23 553 575 553 575 0.99

9 9 3.1e-07 3.7e-05 25.2 1.2 1 23 581 603 581 603 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00025	0.029	16.0	5.0	2	23	128	149	127	149	0.98
2	9	3.3e-06	0.0004	21.9	3.0	1	23	155	177	155	177	0.99
3	9	1.5e-07	1.8e-05	26.1	1.8	1	23	183	205	183	205	0.99
4	9	1.2e-05	0.0014	20.2	2.5	1	23	308	330	308	330	0.98
5	9	5.9e-06	0.0007	21.1	0.9	1	23	336	358	336	358	0.98
6	9	0.00011	0.013	17.1	3.6	1	23	364	386	364	386	0.98
7	9	9.6e-07	0.00011	23.6	2.7	1	23	525	547	525	547	0.98
8	9	3e-05	0.0036	18.9	3.5	1	23	553	575	553	575	0.99
9	9	3.1e-07	3.7e-05	25.2	1.2	1	23	581	603	581	603	0.98

Sequence Information

Coding Sequence: ATGCACCTCAATCATGCTACAGCTGTAAGTGCAGCCGCCATGGTCAACTACCAACACTATGCACCGGCACAAATTACAACATCCCACGGGGTGACCACTACTGCGGGTCAACAACAGACAACAATATCTGCAGCTGGCCTACAGCAAGCACCCTTTACGCTGCATCAATTAACAGCGGTACAAGCCATACAACATCCAACTCATCAAGCCATGTTACATCCACAACATCCATTGGTTCATTTACTGGACATTTCAACAACCGCGGCAGCTACTtccaatttaaataacaatccTCCACCTATAACTCCAATGCCAGTGACTAAAATTGAAATGCCCGAAGAGATTATTGAGCCGATCGTAGATGATCCACGGAAAAAGAAACAGTGCCACATTTGCAAAAACAAGTTTCGCCAATTGACAACGTTGCGAAACCACATGAAGATACACACTGATGAAAGACCTTACAAGTGTAAACATTGCGAAAAAGCCTTCCGTCAAATATCAACACTCACGAATCACGTCAAGATTCACACTGGCGAGAAACCATTCAAATGCAATATTTGTTCTAAGGACTTTCGACAACAATCGACATTgataaatcatattaaaacacatAAGGtGTTTGCTTCTCTTGCAGAATCGAATCAAACGCCAAGTTCAATATTAAACTATCAGACGCAACAAACGCAGGGTACTCAACGTAAAGGAAACTCAAAGTCGATTGTACATTCAGCAGCAGCTGCTGCCGCTCAGGCTCAAATAATACATCAGCAGCagatgcaacaacaacagcagcaacaccaGCAGCAACACGGACAAGGTACAATTGTAACATATACACCACAGCAAagacaaaatataacaaaaagccTTTACACAGGCAGTTACAATTCCCCACAAGCCGATGAGTTGGTCAAGCCGTATCAGTGTAAAATCTGTCAAAAACGTTTCCCACAATTAAGTACCCTGCATAACCATGAACGTGCGCATATTGATCCAAAACCTTATAAATGCGATACATGCGAAAAATCATTTAGTCAATTGGCAACTTTGGCGAATCATAAGAAGATACATTCGAGTGATAAGCCCTATGCTTGTGCTTACTGTTGCATGTCCTTCCGCCAACAAAGTACACTTAACAATCACATGAAGACTCACGCCAATCAAGTGGCCAccataacaacaaattcaacaatagCAGCCACAGCAGGAGGAGGATTGGGGGGTCAAGgaggaaatcatcatcatcctcatcacCAAATTGTTGGCAATAACAATATCCCATTAGCAGCAGCCACAATAATGGTAACGCCAACAGCCTCTGGACATTTACAAATACAGCCGCAAGTAGAACATCATCCTTTGCTACACTTTCTAGACAGCAATACAACAGTTAGCACTCTTAGCACGAAGGAGCAATTTGCCTCGTCAAACAATCATAACAATCACGTTAACGTcaacaacattaacaacaacaacagcaacatcaataataataataatagtaataacaatagtaACAATACTGGAGTTGTAGCCCACTGTTTACGCAACAGTTGCCCAGATCGTCCATTTATGTGCAGTGTATGTCGTAGGACATTCTCTCAGCAGAGCACACTCACAAATCACTTGAAAACTCATACTGGTGAAAAACCATACAAATGTAAAGTTTGCGAAAGTCATTTCAGACAATTGTCCACACTAAATAATCATATGAAAATTCATACGGGTGAAAAACCCTATGCTTGTTCCTATTGTCCTAAACAATTTAGACAAAAAAGTACACTTACAAATCATGTACGTATTCACACTGGCTGA
Protein Sequence: MHLNHATAVSAAAMVNYQHYAPAQITTSHGVTTTAGQQQTTISAAGLQQAPFTLHQLTAVQAIQHPTHQAMLHPQHPLVHLLDISTTAAATSNLNNNPPPITPMPVTKIEMPEEIIEPIVDDPRKKKQCHICKNKFRQLTTLRNHMKIHTDERPYKCKHCEKAFRQISTLTNHVKIHTGEKPFKCNICSKDFRQQSTLINHIKTHKVFASLAESNQTPSSILNYQTQQTQGTQRKGNSKSIVHSAAAAAAQAQIIHQQQMQQQQQQHQQQHGQGTIVTYTPQQRQNITKSLYTGSYNSPQADELVKPYQCKICQKRFPQLSTLHNHERAHIDPKPYKCDTCEKSFSQLATLANHKKIHSSDKPYACAYCCMSFRQQSTLNNHMKTHANQVATITTNSTIAATAGGGLGGQGGNHHHPHHQIVGNNNIPLAAATIMVTPTASGHLQIQPQVEHHPLLHFLDSNTTVSTLSTKEQFASSNNHNNHVNVNNINNNNSNINNNNNSNNNSNNTGVVAHCLRNSCPDRPFMCSVCRRTFSQQSTLTNHLKTHTGEKPYKCKVCESHFRQLSTLNNHMKIHTGEKPYACSYCPKQFRQKSTLTNHVRIHTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00350334;
90% Identity: iTF_01138252;
80% Identity: -