Lvul021972.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Linnaemya vulpina
Gene Symbol
-
Assembly
GCA_963675445.1
Location
OY776278.1:77465804-77470486[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.25 30 6.6 1.1 1 23 267 290 267 290 0.93
2 13 0.014 1.7 10.5 1.3 2 23 369 391 368 391 0.95
3 13 9.8e-05 0.012 17.3 1.6 1 23 744 766 744 766 0.99
4 13 1.1e-05 0.0013 20.3 5.9 1 23 772 794 772 794 0.99
5 13 2.8e-07 3.3e-05 25.3 4.4 1 23 804 826 804 826 0.98
6 13 0.00052 0.061 15.0 0.2 1 23 832 855 832 855 0.96
7 13 0.018 2.2 10.1 1.9 1 23 990 1012 990 1012 0.97
8 13 0.0025 0.3 12.9 1.3 1 23 1018 1040 1018 1040 0.97
9 13 0.0071 0.84 11.4 6.1 1 23 1046 1068 1046 1068 0.97
10 13 6.2e-08 7.3e-06 27.4 0.2 1 23 1074 1096 1074 1096 0.99
11 13 0.002 0.24 13.2 7.4 1 23 1102 1124 1102 1124 0.98
12 13 0.00029 0.034 15.8 4.0 1 23 1132 1154 1132 1154 0.99
13 13 0.00012 0.015 17.0 0.3 1 23 1160 1183 1160 1183 0.97

Sequence Information

Coding Sequence
ATGATCAACACTTTACTGGAGCATGTGCCCATCAAAATGGAAGTTCAAGACGTTAATGAGACTGCAAACAATCCAGCAAATGATGAAGTGgcaatggatgataataaaataaatgagacTGATGAAGAagttgatgatgacgatgatgaagaagatgaagaagaagaaTCCGATATGGAAAGCGATGCCTTGGAAATTGAACAAGAAGCTACAATGTTAATAAGCAGTGATGAGGAAGCTGAATTAGAAGCACAAAGAATACGTTTCCCCAATGTCGCAGCTACAAAGAAATTGCGCAAAGACTCCAATAATTCTTCACGCAGCTCTTCCAGAAATAGTCAGTGTAGTAATACATCCTTGACCACACATGTTACATAtgaaattgtaacaaaaaaatcCACCGTTGAGGAAACAGATAACAAACAAAGAATTACACTACTTCTTAAAAATACGGAGGTTAATAAATCTTCGGAGATTTGTAATGTAGAAAACGACAAAAACACGCAAACAATGCCGAAAAGTAAAAAggagaaaaagaaaactgaaaagaCGGCTTtggaaaacaacaataacaaaaaagatgAATCTGCCAAAcatttggataacaataaaacacCCGTAGATGCCCAGAAAAATACGGACAAATTGATCAAATCACCGGTTAATGAACTAGGACAAAAAGATCGCCGTGGCAGTAATAATTCCGCTTGCAGCGTTGCTTCTACTGTGGCACCTGATAGTGCCGAAATAGAATGTTGTGGAAATATTTATGTCTTCAACTTGCAACATAAGCTCATATTTAATTGCCagttttgtgatttaaaatatggTGACTTGGAAAATTTTGGACGTCATCTTCATGAAGCCCATAGACTATTCAACTTGGACGAAGGCCCCGAAAAAGAAAATGCGCCTCGCAATTTATCCAAAACTAATCGTGTAGCAAATAGTGCGCCAAAAACTTCCAATAATGTTAAGAAAGAGCGTTTGCAGTCTTTTGAATTAGCTGCTGAACCACCTGTTGTTCTGCCGCCTGCCGTTTTGGCAGAACCTCTAGATTCGTGCGGCAATGTTTTCATGCTTAATCATCGTAAACTGTTCTTAGTTTGTGGTTATTGTGAGTGTAAATACGTGAATTTGGATTTGTTTGAGAAGCATTTGAGACAACAACACCGTATATTTGAGGGTTGTCGCAATGAGTTGAATGTGGTACCAAAAGTAGAGATAAAAgaggaaacaaattttataagcgATGTGGCAGGTAAACCAACTGACGCAATTGTCATTGCAACTCCAGAAATCTGCAACGATAATGAAACTGAAACATCAGTTGCTGCTCGAAGTGAAACCTTAGTTGCTGCTGATACAATGGAGGCAAAGAAAACGAGTGAAATTAATAACACAGAACGGGCGGTTTCTAAGTCTCAAAAGACTCAGGAAAATAAATTAGAGTCTGTAGTTAATAAGGAACTGCCAACTTCAGCCGAAcctaaatcaatttcaaaaacaCAGGAAAATGATAAGACCGAAATTGAGAAGGAGATATCTTCACATGCAGACTTAGCAAACAGTGAGGATAGCGTGAGTAATGAAAAATCGACGTCAACGGAGTTTGAGAATGATGAAATATCTTCGGCTAAGGAACCCAAGAATAAACGATGTCCGTCCACCGCATTGGCAACGACACCATCTAAAAATCGTAAAATAGACTctcaaaataacacaaaacatgATACAGAAGAgcaTAAAACTACGAATATGGATGAGCAACTTTCCGATAAAGTAGAATCAACTGCACAAactaaagaaacaaaagatattacagaaattttaaaaataaaagaaacggaTGAAACTGCTAAGGCTTCAATCACGGATTCTACAGAAAACGTATTGTCAGAAACTACGTATGCAATAGAACCAACAAAACCTAAAAAAATAAGCGAATCCGATACAAAAGTACCTATAAAACTGattgaaaaaaggaaaaatagaaAATCCAAAAAAGAAGCACCAACGGGCAGCAAAAAGCGAAAACGTGAAGAATATAGGAAACGCACAGCTGAAAAATGTATGGAGtccaaaaaacaacaactgaaaGATGCAAAAGCAACGAAGCCAAAACGAAATGTTAAAAAATCTGCCCAACCGAATCAAGTCAAAGAGGAGAAAGTTGAAATCGAAACAAGCACTGTGGAATCTCAAGAAACTAGTGATactgaatttaaatataagtGCTCGATGTGTCCTAAAGTTCTGGCacataaaaattctttgaaaacaCATGAACGCATACATACTGGAGAAAAGCCTTACAAGTGCGAAATTTGTCACAAGACTTTTAGGAACATGGCAAATCTCAGTCATCATCAGAAAAGTCACCAGTCGTCTGAGGCTtctcacaaaatatataaatgtgaaATATGTGAGAAAACCTTCTCTCGCAGCAGTCATTTAAAAAAGCACATCTTCTCACACTCCTTGCCGAAGAGGTTCAAATGCGGAATTTGTTTGCGTGGCTACTCCACAAAGGATGCTTTAAAACTACATATTGATAGAGACCATAAGCCTGGTGAAAAATTAGCTAAGAGTAAAAGAAGATCAGCTGGAAAACAAGTCTTACCAACCACAAAAGTGGAAGTAGATAGTTTGCCACAATTGTCTACCAGCCCTCCATGTCCAATGGAAGAAGCTGCATTGACCCAACAAAAGAATCTGACTGATATGAATGATCTTAATGAGGATCCAGTTAATGATATTATTGAACAATTGCAAAATGAAATGGCAAATAACGAATTAGAGAATGGAGAAGTAAATTCTGTAACTTTCACCATTAAGGCTGTTGTGCCGGATAGTGAAGAAACTAAAAAATCTATAGTAACAACACCAACAGTCTATGACACTCAACTCAGTGAAATAGACAGCACAGTCAGTGGTCAACATCAACTTTTGAAAGTTGTTAAGCGCTTCTTTTGTAACGTATGTCACAGTACATTCGATAAACGTATACGGCTGATTGAACATATACGTGTGCATACGGGTGAAAAACCTTTCACTTGCGATGAATGCGGCAAACAATTCCGTATTCGTATACGTTTAAAAGAACACAAACTACGACATTCCAAAGAGAAGAAATTTATATGTGAAATCTGTCAATTAGGCTGTTGCACCAAGCAGGATCTTAACCAGCACATGCGTCATCATACGAACGATCGTCGTTACCAGTGTACCATGTGCCCCAAAGCATTTGTACGCAGCTCTGACTTGAAAATTCATATACGTGTTCATACCGGAGAAAAACCATACATATGCGAAATATGTCACAAATGTTTCCGGGCCAATCAAAATCTATGCGTACACAAGAAGTCGCACATGGGCGACGCCTCAAAAATCTACAAATGTGAGCAttgtgaaaaaaagtttatgcGCAATATCGATCGCAAAGTACACATGAGATCACATACGGGTGAAAAACCGTACAAATGTGAGATTTGCGAACGTGGCTATTCTTCAAAATTCAATGTGCGGGCACATATTGAAAGAGATCATATAGCGGCAAAAGGTACAGATGATACAGTTCCCAAGGGCAAAAGGAAACCGGGACCAAAAACCAAAGCATTAAAGGAAGAGttagaaaagcaaaagaaattgattgAAGAGCTCCGAAATCAATTATGGCATCAACTTAAACGAGATGAAAAGATCATACCATCCGACGAAGAAATACTGCCGGACCAAAGTTTACTAGAAGAGTCTATGGCAACAGACAACTCTCTGCTTAGTACAACTAGTAATATTAATGATTCTATACAAAGTGCGTGCGAATtgctaaataaactaaaatcatcaACAAATATCTCTAAACCCTTAACGGCAATACCCTCGCCTCCCCCTATGGCAGAGCCACCCACCAATCCCTTTGCAAATGCAAAAACACTCTCTACAACTTTACTACCTCTTACTATAACACAAAACTTAGAACAAGCTTCACTTGTACCTACAGCAGCACCATCGTCCTCCACTTCATGTCCAACCACACCATCACCTCCTAAGACTACAGCTACCAAGGTAGTGTCACAAAAGACTTCATTGGGCATACAACAAGTTTCGGTGACTGTTTCCATGCAGGTGGAAAATGTTACAACTAGTCCTGCCAGCACTGTTGAAAAGGAGAATGCAGGCATTATGACTGGCAGCCCTAGTGGTGCGAATAGTCCCAAGAAGGAAAGAAAAATTACAAGTTACTTTACAGTAGTCGGCCAGAAAGCCGAAGTTTAA
Protein Sequence
MINTLLEHVPIKMEVQDVNETANNPANDEVAMDDNKINETDEEVDDDDDEEDEEEESDMESDALEIEQEATMLISSDEEAELEAQRIRFPNVAATKKLRKDSNNSSRSSSRNSQCSNTSLTTHVTYEIVTKKSTVEETDNKQRITLLLKNTEVNKSSEICNVENDKNTQTMPKSKKEKKKTEKTALENNNNKKDESAKHLDNNKTPVDAQKNTDKLIKSPVNELGQKDRRGSNNSACSVASTVAPDSAEIECCGNIYVFNLQHKLIFNCQFCDLKYGDLENFGRHLHEAHRLFNLDEGPEKENAPRNLSKTNRVANSAPKTSNNVKKERLQSFELAAEPPVVLPPAVLAEPLDSCGNVFMLNHRKLFLVCGYCECKYVNLDLFEKHLRQQHRIFEGCRNELNVVPKVEIKEETNFISDVAGKPTDAIVIATPEICNDNETETSVAARSETLVAADTMEAKKTSEINNTERAVSKSQKTQENKLESVVNKELPTSAEPKSISKTQENDKTEIEKEISSHADLANSEDSVSNEKSTSTEFENDEISSAKEPKNKRCPSTALATTPSKNRKIDSQNNTKHDTEEHKTTNMDEQLSDKVESTAQTKETKDITEILKIKETDETAKASITDSTENVLSETTYAIEPTKPKKISESDTKVPIKLIEKRKNRKSKKEAPTGSKKRKREEYRKRTAEKCMESKKQQLKDAKATKPKRNVKKSAQPNQVKEEKVEIETSTVESQETSDTEFKYKCSMCPKVLAHKNSLKTHERIHTGEKPYKCEICHKTFRNMANLSHHQKSHQSSEASHKIYKCEICEKTFSRSSHLKKHIFSHSLPKRFKCGICLRGYSTKDALKLHIDRDHKPGEKLAKSKRRSAGKQVLPTTKVEVDSLPQLSTSPPCPMEEAALTQQKNLTDMNDLNEDPVNDIIEQLQNEMANNELENGEVNSVTFTIKAVVPDSEETKKSIVTTPTVYDTQLSEIDSTVSGQHQLLKVVKRFFCNVCHSTFDKRIRLIEHIRVHTGEKPFTCDECGKQFRIRIRLKEHKLRHSKEKKFICEICQLGCCTKQDLNQHMRHHTNDRRYQCTMCPKAFVRSSDLKIHIRVHTGEKPYICEICHKCFRANQNLCVHKKSHMGDASKIYKCEHCEKKFMRNIDRKVHMRSHTGEKPYKCEICERGYSSKFNVRAHIERDHIAAKGTDDTVPKGKRKPGPKTKALKEELEKQKKLIEELRNQLWHQLKRDEKIIPSDEEILPDQSLLEESMATDNSLLSTTSNINDSIQSACELLNKLKSSTNISKPLTAIPSPPPMAEPPTNPFANAKTLSTTLLPLTITQNLEQASLVPTAAPSSSTSCPTTPSPPKTTATKVVSQKTSLGIQQVSVTVSMQVENVTTSPASTVEKENAGIMTGSPSGANSPKKERKITSYFTVVGQKAEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00899917;
90% Identity
-
80% Identity
-