Basic Information

Insect: Linnaemya vulpina
Gene Symbol: -
Assembly: GCA_963675445.1
Location: OY776276.1:946093-950496[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0012 0.14 13.9 2.4 1 23 315 337 315 337 0.99

2 8 3.3e-06 0.00039 21.9 0.9 1 23 342 364 342 364 0.98

3 8 1.8e-07 2.2e-05 25.9 0.2 2 23 373 394 373 394 0.97

4 8 1.1e-06 0.00013 23.4 0.3 1 23 400 422 400 422 0.98

5 8 1.4e-07 1.6e-05 26.3 3.9 1 23 428 450 428 450 0.98

6 8 5e-07 6e-05 24.5 1.9 1 23 456 478 456 478 0.98

7 8 4.5e-06 0.00054 21.5 4.8 1 23 484 506 484 506 0.97

8 8 0.00037 0.043 15.5 0.5 1 21 512 534 512 535 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0012	0.14	13.9	2.4	1	23	315	337	315	337	0.99
2	8	3.3e-06	0.00039	21.9	0.9	1	23	342	364	342	364	0.98
3	8	1.8e-07	2.2e-05	25.9	0.2	2	23	373	394	373	394	0.97
4	8	1.1e-06	0.00013	23.4	0.3	1	23	400	422	400	422	0.98
5	8	1.4e-07	1.6e-05	26.3	3.9	1	23	428	450	428	450	0.98
6	8	5e-07	6e-05	24.5	1.9	1	23	456	478	456	478	0.98
7	8	4.5e-06	0.00054	21.5	4.8	1	23	484	506	484	506	0.97
8	8	0.00037	0.043	15.5	0.5	1	21	512	534	512	535	0.94

Sequence Information

Coding Sequence: ATGAATGATTTAAAAATGGGTTTTAAACAATCCCTATTGCAACGCCTACAACACTTCGAAATGGGATCAGTTCATCCTAAATCCTCTACAGAATCTAAAGACTCGCAAAATAGCCAAGTCACCGATTTTAGTATACAAAGAATCTTGGGAAATAATCAAGAGCtaagaaatacaaaaacttGCAGCCAAGATACACCGCCTTCCAGTCCCACACTCTATGCACCGGTAGCGACCAAACCTACAGTGGCATCCACCGatattttggatttatcaaaaagtaaacaaactgAAAGTTATACACACCCACTGCTAGCCTCCGCACATGCTGGAATCGAATTTCCATTTAACAATCCAGCTCATTATGCGGCCTTTCATCCGAACTTATTGGCAGCAGTTGCTGCTGCAAATGCCCAAAAATTTTATGCACAATTTCTGCCTCACGTGTTTCCCGCCGGCTTTTATAATAGTGCAACAGCAGGTGTTAGTAGACCTGCTACATCCTATCAAAAACGTTATTTCGCTCCCTACATTTTAAACTCTCAGCCGTCTTTGGCGGCAACACAAGCTCCTCCAACACCACCCACACCTACCGCAACCACCAGCTCCCTTCATCAAAACAATCACTCACAACAGTCCCACTATTCTCCCAACAACAAATTAATGTGCTCACGTCCCGATTGTCTGGACTGTTTAGAGTCGCATTACAAGTCTTCAACGTTTCCCTACAAATCACCCATCCTATCCCCGGCCGCCTCAACTGTTAGTTCTGCGGGCTCTTATCATTCCAAAGCCCCAAAGGATTTATTAATGGGAtcttcaaatatttcattaacttCTGTCACAAACATACATCTAACGGCTGCGAAAACCTCTAGGGAAAATCTTTTAGGCTCCGTGTATGATAATCGCTCCAATTTGCCAACAAACTCCGAGGAGATCAGCTATAAATGTCGTATATGCGATAAAGTTTTTGGATGTTCGCAAACGTTGCAGGCCCATGAAAAAACCCACAAATCTCCCCGTTATGAGTGCACTGACTGCGGCAAAGGTTTCTCACAACTGCGCAACTACAAATACCATCTCTCTGTGCACAGAGGCACCAAAGAATTCGCCGCCGAGTGTCCGGAATGTGGCAAAACCTTTAACGACAAGGGCTACCTCAGCAGTCACATGAAAATACATCGCAACAAAAAGGAATACGAATGCCCCTACTGTCCGAAATCGTTCAATCAACGTGTTGCCTTCAACATGCATGTACGCATACACACTGGAGTCAAGCCGCACAAATGTGCCGAGTGTGGCAAACGTTTTTCAAGAAAAATGCTTTTGAAACAACACATGCGCACGCACAGCGGCGAAAAGCCATATCAGTGTTCTGTCTGCGGAAAATCATTTGCTGATCGCAGCAACATGACGTTGCATCATCGTTTACATTCAGGCATTAAGCCATTTAATTGTCCCATTTGTCCGAAAGCATTTACCAAGAAACATCATTTGAAAACACATTTAAACTATCACACTGGTTGTAAGCCGTACGTCTGTCCACATCCGAATTGTAATCAAGCGTTTACGCAATCCAGCAACATGCGTACACATGCCAAAAAGTGTCAATACAGACCGTTACAAATGGCATATCCGCCGGTAGCACAAAAGTCAAATGCATCGGCTACCGTTGCCAGCAATCAATCGTCAATACTTTCAGCAGCAGCTGCagttgcagcagcagcagtggtGACATCTTCATCGATGGCTCCAGCATTGGCACACACAACGCAAAGTTTCATATTGAATCCAATTTCCCGTTTACCTTCCTCATTAGCAGTGGCAATTGGCAACAGTCATAATACTTTAGCCACAGTCTCTTCCAGCAATAACAGCCACAACAATAATagttgcaacagcaacaacagcattcCTTTCATACCTTCAACCACTTTAGCGGCTGGCATTCGGATGTTATCCACTGTTACCTCAGCAGTACCTGCAAACAGCCTACAGTCTCCACCATCAGCATTTCCGCCTGCTCAACAGCCTTTATTATCCACGCTGCGTCCGTTTTGA
Protein Sequence: MNDLKMGFKQSLLQRLQHFEMGSVHPKSSTESKDSQNSQVTDFSIQRILGNNQELRNTKTCSQDTPPSSPTLYAPVATKPTVASTDILDLSKSKQTESYTHPLLASAHAGIEFPFNNPAHYAAFHPNLLAAVAAANAQKFYAQFLPHVFPAGFYNSATAGVSRPATSYQKRYFAPYILNSQPSLAATQAPPTPPTPTATTSSLHQNNHSQQSHYSPNNKLMCSRPDCLDCLESHYKSSTFPYKSPILSPAASTVSSAGSYHSKAPKDLLMGSSNISLTSVTNIHLTAAKTSRENLLGSVYDNRSNLPTNSEEISYKCRICDKVFGCSQTLQAHEKTHKSPRYECTDCGKGFSQLRNYKYHLSVHRGTKEFAAECPECGKTFNDKGYLSSHMKIHRNKKEYECPYCPKSFNQRVAFNMHVRIHTGVKPHKCAECGKRFSRKMLLKQHMRTHSGEKPYQCSVCGKSFADRSNMTLHHRLHSGIKPFNCPICPKAFTKKHHLKTHLNYHTGCKPYVCPHPNCNQAFTQSSNMRTHAKKCQYRPLQMAYPPVAQKSNASATVASNQSSILSAAAAVAAAAVVTSSSMAPALAHTTQSFILNPISRLPSSLAVAIGNSHNTLATVSSSNNSHNNNSCNSNNSIPFIPSTTLAAGIRMLSTVTSAVPANSLQSPPSAFPPAQQPLLSTLRPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00742125;
90% Identity: -
80% Identity: -