Lvul032773.1
Basic Information
- Insect
- Linnaemya vulpina
- Gene Symbol
- -
- Assembly
- GCA_963675445.1
- Location
- OY776280.1:75332055-75334123[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.7e-05 0.0091 17.6 2.3 2 23 216 237 215 237 0.96 2 12 0.00011 0.013 17.1 1.1 1 23 243 265 243 265 0.96 3 12 0.0016 0.19 13.4 0.0 1 23 277 299 277 299 0.93 4 12 0.0006 0.071 14.8 0.5 1 23 304 327 304 327 0.98 5 12 6.5e-06 0.00077 21.0 0.8 1 23 333 355 333 355 0.98 6 12 1e-05 0.0012 20.4 1.4 1 23 361 383 361 383 0.98 7 12 3.7e-05 0.0044 18.6 1.4 1 23 389 411 389 411 0.95 8 12 0.0023 0.27 13.0 4.1 1 21 416 436 416 438 0.94 9 12 4.4e-05 0.0052 18.4 1.3 1 23 444 466 444 466 0.96 10 12 2e-05 0.0024 19.5 4.9 1 23 472 494 472 494 0.98 11 12 0.00014 0.017 16.8 0.6 1 23 500 522 500 522 0.97 12 12 0.00027 0.032 15.9 0.7 1 23 528 550 528 550 0.96
Sequence Information
- Coding Sequence
- atgacTGCAGTTCTATTAGGCCGCATATGTCGCACTTGCTTACAAAAGTCTTGCGGTATGCTCAAATTGAGTCAGTTTGTTAAAGATGATCTACAAATCGGTAGTATGCTTAGTCAAACTGTACCCAATATTGATGTGGAAGTGGAGAATATTCCTCTACCGTTGGAAATATGTGAAGAATGTCTGAGGAAGTTGCAAACATCGTACGATTTTGTTCAAATGTGCTTAAAGAGTAATAAggagctaaaaaatattttaaaccaaCAAGAAGTGGAAATTGAAAGTACGATGGAAGAATCAAAAATTCATGTTGCCCCCATAGAATTGTTGGATGAAACAACGATTTTTGtggataattttaaaaaagagctGTATGACGACAACTCGAATATAGATAATGTAAGATCTAATGGGGAACAAGACAAGAGCACAGATCTTAAAATACAAATAGTTAAACTAGAGGTTGATACTCAAAATGAAAGTCGTCACTATCATAACAGCAGTTCGGACGAATATTGGCCTAATGACGACAAAGAGGATAGTGATAGTAATTTCTTTGAGAAAATGGCAAAAGGTGGCCCCTTAGATATACGAACAAAGAGGAAATACCACAGGAAAGTACCTCTTAAGCGAGGTGGCTCAAAAGTATGTCTTCATTGTAATAAGGTGTTTGCTAAGAAGAATCTTTTAACTAAGCATTTGTCAGTACATGACTCGGAAAATCAATTTGTATGTGAAATTTGTGATTATCGGTTTTCAAgtgaaagaaaacttaaaactcACAGCGCCAAACACTCAACtgtagaaataagtttttctgGTGGTCCATATCCCTGCCCAGATTGCCCCATGATTTTCAATCAAACACGAGCTTTAGCTGCACATAGCGTAATTCATTCGGAAAGTGATTTTAAATGTGAAGTGTGTAATATGAGTCTGAAAACGATGGCTGCTGTTACCAGACATATGAACTCCAAACATCCGGACGTTTTGCCATATAAATGTAATCTATGCGATAAATCTTTTCCCGTGGAAAACCATTTAAATGACCACATTAACGAGCATATGGGTTACAAAAAACATAAATGTGATTTTTGTGAGAAAAGTTTCCCAAGTAGTACCGCCTTAAAGGATCATGTACGTGTTCATACTGGCGAATCACCGTTTTTATGTGCCCACTGTGGAAAAGCATTTAAAACTGCTAATGTTTTGCGCCAACATTTACAAAGACATGgtgaaaaaaaattccattgCCCAGAATGTCCCATGAAGTTTTACCTCAAAGTAAACTTAACTAAACATATGAGTTGTCACACTAAGCTAAAACCGCATGTTTGCGATGTATGTGGATCAGCTTTCACCAGACAAGATTCCTTAAAAGCACACAAATTTAAACATACGGGAGCGAGACCTTTTAAGTGTGAAGATTGCAACATGAGttttgtttttaagcgCCACTTAAAGCGACATAAAATTACTCATACTGGTGAAAAGCCACATATGTGCACTTTTTGCGATCGTGCATATGCAGCTAGCGGCGATTTAGTGAAACATTTGCGTACTCATGTAGGTGAAAAGACATACTTCTGTGATGAATGTCCAGAGTCGTTTAAATACTCACTCGATCTTAAAGATCATAAAAATCTGCATTATAAAGAAAGATTAAATTTGGCGGAGAGGGGTGTAATAACTGTAGAAATTCCAAATGAACAATTAAATTTGGAAGAAAGGAATGTAATAACTGTAGAAATACCAAATGAGGATATCGAAATGCATACGGAAGATACTGTTGTTACATTAGAAGAACTTTATGAAGTTGACCAAAATAgcgaataa
- Protein Sequence
- MTAVLLGRICRTCLQKSCGMLKLSQFVKDDLQIGSMLSQTVPNIDVEVENIPLPLEICEECLRKLQTSYDFVQMCLKSNKELKNILNQQEVEIESTMEESKIHVAPIELLDETTIFVDNFKKELYDDNSNIDNVRSNGEQDKSTDLKIQIVKLEVDTQNESRHYHNSSSDEYWPNDDKEDSDSNFFEKMAKGGPLDIRTKRKYHRKVPLKRGGSKVCLHCNKVFAKKNLLTKHLSVHDSENQFVCEICDYRFSSERKLKTHSAKHSTVEISFSGGPYPCPDCPMIFNQTRALAAHSVIHSESDFKCEVCNMSLKTMAAVTRHMNSKHPDVLPYKCNLCDKSFPVENHLNDHINEHMGYKKHKCDFCEKSFPSSTALKDHVRVHTGESPFLCAHCGKAFKTANVLRQHLQRHGEKKFHCPECPMKFYLKVNLTKHMSCHTKLKPHVCDVCGSAFTRQDSLKAHKFKHTGARPFKCEDCNMSFVFKRHLKRHKITHTGEKPHMCTFCDRAYAASGDLVKHLRTHVGEKTYFCDECPESFKYSLDLKDHKNLHYKERLNLAERGVITVEIPNEQLNLEERNVITVEIPNEDIEMHTEDTVVTLEELYEVDQNSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00899901; iTF_01138250;
- 90% Identity
- -
- 80% Identity
- -