Basic Information

Insect: Linnaemya vulpina
Gene Symbol: -
Assembly: GCA_963675445.1
Location: OY776281.1:565690-567539[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.5e-07 3e-05 25.4 4.3 1 23 92 114 92 114 0.98

2 12 9.4e-08 1.1e-05 26.8 2.4 1 23 120 142 120 142 0.97

3 12 0.00012 0.014 17.1 7.8 1 23 148 170 148 170 0.97

4 12 0.00012 0.014 17.0 6.0 1 23 176 198 176 198 0.98

5 12 8.5e-06 0.001 20.6 4.5 1 23 204 226 204 226 0.98

6 12 6.2e-06 0.00073 21.1 8.1 1 23 232 254 232 254 0.98

7 12 4.4e-06 0.00052 21.5 3.7 2 23 261 282 260 282 0.94

8 12 4.4e-07 5.2e-05 24.7 7.3 1 23 288 310 288 310 0.98

9 12 0.00018 0.021 16.5 9.5 1 23 316 339 316 339 0.95

10 12 0.00015 0.018 16.7 0.5 1 23 345 367 345 367 0.97

11 12 1.7 2e+02 3.9 1.0 12 23 368 379 368 379 0.92

12 12 3e-06 0.00035 22.1 1.6 1 23 385 408 385 408 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.5e-07	3e-05	25.4	4.3	1	23	92	114	92	114	0.98
2	12	9.4e-08	1.1e-05	26.8	2.4	1	23	120	142	120	142	0.97
3	12	0.00012	0.014	17.1	7.8	1	23	148	170	148	170	0.97
4	12	0.00012	0.014	17.0	6.0	1	23	176	198	176	198	0.98
5	12	8.5e-06	0.001	20.6	4.5	1	23	204	226	204	226	0.98
6	12	6.2e-06	0.00073	21.1	8.1	1	23	232	254	232	254	0.98
7	12	4.4e-06	0.00052	21.5	3.7	2	23	261	282	260	282	0.94
8	12	4.4e-07	5.2e-05	24.7	7.3	1	23	288	310	288	310	0.98
9	12	0.00018	0.021	16.5	9.5	1	23	316	339	316	339	0.95
10	12	0.00015	0.018	16.7	0.5	1	23	345	367	345	367	0.97
11	12	1.7	2e+02	3.9	1.0	12	23	368	379	368	379	0.92
12	12	3e-06	0.00035	22.1	1.6	1	23	385	408	385	408	0.96

Sequence Information

Coding Sequence: ATGAATGATGCCACCGAGAAAATCATATTAGGCCTCGATTTTCTCCGGAAGGTGAACACCACCCTAGTTTGTGCCGGCCTGGTCGTAAGATTAGAACAGAAGGGGAAGCCCGAGAGACAGGAGGAAACCAATGACAAGGTAAGAGAACCACACAGTGAACCAATGTACGCAGTACGCAGCGAATTAAGCCGCAGCCTGAAACAGAAAATAGACCGCTTTCTTAGCAAAGAACACTATGTCAATCACTATATGTGGCATACTGGTCAAACTCCACATCAATGTGAAGTATGTGGCAAAAAGTATACACGCAAAGAACATTTAGCAAATCATATGCGTTCGCACACAAATGACACACCGTTTCGTTGCGAAATTTGTGGTAAAAGCTTTAGTCGTAAGGAGCATTTTACTAATCATATATTATGGCATACAGGGGAAACCCCACATCGTTGTGATTTCTGTTCGAAAACGTTTACACGCAAGAAACATTTATTAAATCATGTTCGCCAACATACTGGAGAATCGCCACATCGTTGTACATATTGTATGAAAACTTTTACGCGACAAGTGCATTTAGTAAATCATATACGACAACATACTGGTGAGACACCCTTTAAGTGCACTTACTGTACCAAGGCTTTCACCCGAAAAGATCACATGGTCAATCATGTACGCCAACATACAGGTGAATCTCCACATAAATGTACATACTGTACGAAGACGTTTACGCGCAAAGAACACTTAACGAATCACGTACGTCAACATACCGGTGAATCGCCTCAACGCTGCAGTTATTGTAAGAAAAGTTTTACAAGGAAGGAGCATCTTACGAATCATATAGGACTGCATACTGGTGATTCGCCCCACCAGTGTGAATATTGTCAGAAAACATTCACAAGAAAGGAACATCTCAACAACCATATGCGTCAACATTCCAGTGATAATCCACACTGCTGCAATGTCTGTAATAAACCATTTACTCGCAAGGAACATTTAATAAACCACATGTCTCGCTGCCATACTGGTGATCGACCATTTGCATGTGAAACTTGTGGAAAATCCTTTCCACTTAAGGGAAACTTACTCTTCCATCAGCGCAGCCATACTAAGGGACATTTGGTTTCACATATGCGCTCCCACTCTGGCGAAAAACCACACGCTTGTACTCTATGTAATAAAGCTTTTGTGGAACGAGGTAATTTGAAACGTCACATGAAAATGAATCACCCAAATGCACCAATGCCACCACCCCCTGTACCACATCCAGTTATACCAGCAGGAGTTTTGCCGCAAATTGAGCAAGAAATAAATCCagttataattgaattaaattcgcTTCAAACTACAGCTCCAACAATGCACACTATACAACAAATAACTGCTGCAGCATCAGCAAATACAGTGCAAATGACAACGGGCGGAACGCCTTTAGTAACTTCAACTATAATATCGCATACTACACAGAAACAAATAGCACAGCCTCAAGCTCACGTGCAGCAAAGTTCTTTGCAGCAACAAGTAGTAGTTACAATTCAACAACAAGAGGTCACATCGTATCAACAAGttttgcagcagcaacaacagcaacaccaaCATAATCAGTTGTTGCAGTTGTCTATAGAACCACCGGCGCACACGCCACCCTTGCCTACTAGTCCAAGGGTGATCAGCATACATCAAGCACCTGAACAATTGCAGCAGAGGATCCAACGTGCGGTCCAACAAGGGCACCTACCATCCCGCACGCGGCTTTTTGAAATGATTCAGGGACAAGCTTACCGCGTAAACATCTAG
Protein Sequence: MNDATEKIILGLDFLRKVNTTLVCAGLVVRLEQKGKPERQEETNDKVREPHSEPMYAVRSELSRSLKQKIDRFLSKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKKHLLNHVRQHTGESPHRCTYCMKTFTRQVHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGESPQRCSYCKKSFTRKEHLTNHIGLHTGDSPHQCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGHLVSHMRSHSGEKPHACTLCNKAFVERGNLKRHMKMNHPNAPMPPPPVPHPVIPAGVLPQIEQEINPVIIELNSLQTTAPTMHTIQQITAAASANTVQMTTGGTPLVTSTIISHTTQKQIAQPQAHVQQSSLQQQVVVTIQQQEVTSYQQVLQQQQQQHQHNQLLQLSIEPPAHTPPLPTSPRVISIHQAPEQLQQRIQRAVQQGHLPSRTRLFEMIQGQAYRVNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -