Lvul032772.1
Basic Information
- Insect
- Linnaemya vulpina
- Gene Symbol
- -
- Assembly
- GCA_963675445.1
- Location
- OY776280.1:75329095-75331664[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.8e-05 0.0056 18.3 4.5 1 23 173 195 173 195 0.98 2 15 0.0026 0.31 12.8 2.1 1 21 201 221 201 222 0.92 3 15 0.86 1e+02 4.9 7.0 1 21 281 301 281 302 0.93 4 15 3.8e-05 0.0045 18.6 1.9 2 23 312 334 311 334 0.96 5 15 0.00024 0.028 16.1 2.3 1 23 413 435 413 435 0.98 6 15 0.0052 0.61 11.9 3.2 1 23 441 463 441 464 0.95 7 15 0.0049 0.59 11.9 0.3 1 23 485 508 485 508 0.96 8 15 1.1e-05 0.0013 20.3 2.6 1 23 514 536 514 536 0.98 9 15 2.1e-06 0.00025 22.5 2.4 1 23 542 564 542 564 0.99 10 15 1.3e-07 1.5e-05 26.4 1.8 1 23 570 592 570 592 0.96 11 15 0.0081 0.97 11.2 4.1 1 23 598 620 598 620 0.97 12 15 0.00097 0.12 14.2 2.2 1 23 626 648 626 648 0.96 13 15 6.5e-07 7.7e-05 24.1 0.4 1 23 654 676 654 676 0.99 14 15 1.5e-06 0.00018 23.0 1.7 1 23 682 704 682 704 0.99 15 15 0.0086 1 11.2 0.1 1 19 710 728 710 729 0.97
Sequence Information
- Coding Sequence
- atgttaatACTTGAAATATATGGTCGAGTGTGTCGTGTGTGCATGTGCAAATCGAGTGATTTGCATGATTTGAATGAGATAACCGAAGAGTCACTCACCATGAATGAAATGTTGTCAAAAACTGTCTCCGGCATACATGCCAATATCGAATTTCCAGTGCCTCAAGAAATTTGTGATTTATGCATGGAACACTTACAAATTTCCTTCAGATTTCAGCAGCTGTGCATGGCTACTAATGAACAAATGCTGAAAATCTGGGAACAATCTCAGAAAGCAGAAGTAAAACAACAGTCTTTAACAAGTGAAGTAGAAAATGAAGAAGAACCAGATCCTATTAAAGTTGAGTACGACATAGAAGGAGATGAGCAAAAGTTTGATGATATGGAGGTATTAGATGTGGAAAATGGCAAAAAATGGGATAATGAGACAGAGGATGAAGCACATGGGAAGGTGGAAATGACGCTGGAAGCAAATTCACCAAAGTCAGTGTCATCCAGTCGGCAATCCATAGGTCAGTTTTCATGTCTAGAATGTAAGGAAGCATTTACAAGACACTCTCAATTAAAACGCCATCGTAGTAAGCATGAATCCACTCATCCTTTCGATTGTCGTAATTGCACACaacgttttaaaacaaaagctacTCTTCaaaaacattcgaaaagttGTAAAAAAGTCAAAAGAAAAGTGTTGAGTAAAAACTATAATGACGAGGATGATGATGAGGATATGCCCCTTATCGCTTTAAAAAAAGTGGAAACTGACAATGAAAGCGATGTCACTAAGGAAAACGATAAGAAGaaacgaaaaattattaaaactgtcGGCAAAAAGACTCCTTATTATTGCTCTCAGTGCGACTGCTATTTCAAATACGGTTATCAGCTCACAAAACATAGTTGCACTGACAGTAATAGTGGTTCACATACAAATAAATGCGAAATATGCAAAAAGACTTTTAACACAGAAAATATGTTGCAAAAACATGTGAATAGCAAACATAAAGGTAACAAAACTACTACAGACAAATTGGTGACGAAGAATTCGAAAAGAGTTAAAATCACTAACAGCGATGATGATGATCAGATTGAGGAAATGGATTTGGCTCATGACAATGATAACGATGACAATTGGAATGATTTAGATCAAGCCGATTCATCGGATGATAGCGGTTCTGACTATGCAGAAAAAGACAAAAGCACAGCTAAGTCAAAACCAGAACCGGAATTAAATCAATTTACTTGCAATGAATGTGATGCATCCTTTAGATTTGAAAAACAGCGGGTACGTCATATGAAAAAGCATACTGAAGCCCATCGCTTTGTATGTGCTTTGTGTTGGGATCGATTCAAGTATCCACATATGCTGCAGAAACATATGGAAAAACATCATCCTGAGGAGAATCCAAATCCCAAAGCCGTTGAGGCAAAACCGGAAAATGTAGAAAAGACACATGTTTGCAGTTACTGTCCATCTGCTTATTCGAACGTTGGCGGCTTAGCGCAGCACATGAGCAAGAAGCACCCGGAAATAAAGCCTTTTAAATGTGACAAGTGCGACAAAACGTTTGTGGTCGAAGAGCAtttaaaaatacacacaaatCGACATatgggtattaaaaatttcaaatgtgatCTTTGTGATAAATCATTTTCATTTAAGTTTGCTATGAAACAGCATATGCGCATACATACGGGTGATTTGAACTACTTGTGTACACTATGCGGCAAAAAGTTCTATAGACCAAGTAATCTGCGTCAGCATATGCAACGCCATGGTGATGACAAACCATATACATGCCCTCACTGCCCTAAACGTTTTAAATGTCCTTCTGATCGTTATATACATTTAATGTCCCATCAGGAGGGTAAGAACCACGTATGTCAGACTTGCGGTGCAAGGTTCTCGCGGGTGGATACTCTACATCAGCATCAAATACTTCACACAGGAGAGAAACGTTACAAATGCGATCAATGTCCAATGgcATTCCCCCGCCTGATGAATTTAAACCGGCATTTGCGAACCCATACTGGTGAAAAACcatataaatgtaaattttgcgAGAAGGCTTATGCACAAAGTAATGACTTGAACAAACATTTACGCACACATGTTGGTGAAAATACTTATATGTGCACCCAGTGCCCGGCTGCATATAAATACCAGGCCGATTTAAGAAACCATGAATGGGAACACTATCGCCTTCAAAAGGAGGCGGAACAAAAGGCTAAAGAAGAAGCATCTGCATTAAAAATGAAAGATGAAGGAAGTGTATTGGAAGTAAATgtgtag
- Protein Sequence
- MLILEIYGRVCRVCMCKSSDLHDLNEITEESLTMNEMLSKTVSGIHANIEFPVPQEICDLCMEHLQISFRFQQLCMATNEQMLKIWEQSQKAEVKQQSLTSEVENEEEPDPIKVEYDIEGDEQKFDDMEVLDVENGKKWDNETEDEAHGKVEMTLEANSPKSVSSSRQSIGQFSCLECKEAFTRHSQLKRHRSKHESTHPFDCRNCTQRFKTKATLQKHSKSCKKVKRKVLSKNYNDEDDDEDMPLIALKKVETDNESDVTKENDKKKRKIIKTVGKKTPYYCSQCDCYFKYGYQLTKHSCTDSNSGSHTNKCEICKKTFNTENMLQKHVNSKHKGNKTTTDKLVTKNSKRVKITNSDDDDQIEEMDLAHDNDNDDNWNDLDQADSSDDSGSDYAEKDKSTAKSKPEPELNQFTCNECDASFRFEKQRVRHMKKHTEAHRFVCALCWDRFKYPHMLQKHMEKHHPEENPNPKAVEAKPENVEKTHVCSYCPSAYSNVGGLAQHMSKKHPEIKPFKCDKCDKTFVVEEHLKIHTNRHMGIKNFKCDLCDKSFSFKFAMKQHMRIHTGDLNYLCTLCGKKFYRPSNLRQHMQRHGDDKPYTCPHCPKRFKCPSDRYIHLMSHQEGKNHVCQTCGARFSRVDTLHQHQILHTGEKRYKCDQCPMAFPRLMNLNRHLRTHTGEKPYKCKFCEKAYAQSNDLNKHLRTHVGENTYMCTQCPAAYKYQADLRNHEWEHYRLQKEAEQKAKEEASALKMKDEGSVLEVNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259363;
- 90% Identity
- iTF_00899898;
- 80% Identity
- -