Basic Information

Insect: Linnaemya vulpina
Gene Symbol: grau
Assembly: GCA_963675445.1
Location: OY776279.1:19861113-19869761[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 3.7e-05 0.0044 18.6 0.9 1 23 322 345 322 345 0.97

2 17 0.00049 0.058 15.1 0.1 2 23 351 372 350 372 0.96

3 17 0.00067 0.08 14.7 1.6 2 23 381 403 380 403 0.95

4 17 0.0015 0.17 13.6 0.3 3 23 410 430 408 430 0.96

5 17 0.00062 0.074 14.8 0.7 2 23 439 461 438 461 0.96

6 17 8.3e-06 0.00099 20.7 1.6 2 23 471 493 470 493 0.96

7 17 0.00015 0.018 16.7 1.2 2 23 500 521 500 521 0.97

8 17 0.012 1.4 10.7 2.5 3 23 529 550 528 550 0.96

9 17 7.3 8.7e+02 2.0 0.1 6 23 792 809 792 809 0.97

10 17 0.00043 0.051 15.3 1.5 1 23 815 838 815 838 0.96

11 17 5.7e-05 0.0067 18.0 0.7 1 23 843 865 843 865 0.97

12 17 4.4e-06 0.00052 21.5 0.6 2 23 874 896 873 896 0.96

13 17 3.5e-05 0.0041 18.7 0.4 3 23 903 923 901 923 0.97

14 17 5.7e-05 0.0067 18.0 0.7 3 23 933 954 931 954 0.96

15 17 4.8e-06 0.00057 21.4 0.5 2 23 964 986 963 986 0.97

16 17 5.7e-06 0.00068 21.2 0.8 2 23 993 1014 993 1014 0.97

17 17 0.0058 0.69 11.7 3.6 1 23 1020 1043 1020 1043 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	3.7e-05	0.0044	18.6	0.9	1	23	322	345	322	345	0.97
2	17	0.00049	0.058	15.1	0.1	2	23	351	372	350	372	0.96
3	17	0.00067	0.08	14.7	1.6	2	23	381	403	380	403	0.95
4	17	0.0015	0.17	13.6	0.3	3	23	410	430	408	430	0.96
5	17	0.00062	0.074	14.8	0.7	2	23	439	461	438	461	0.96
6	17	8.3e-06	0.00099	20.7	1.6	2	23	471	493	470	493	0.96
7	17	0.00015	0.018	16.7	1.2	2	23	500	521	500	521	0.97
8	17	0.012	1.4	10.7	2.5	3	23	529	550	528	550	0.96
9	17	7.3	8.7e+02	2.0	0.1	6	23	792	809	792	809	0.97
10	17	0.00043	0.051	15.3	1.5	1	23	815	838	815	838	0.96
11	17	5.7e-05	0.0067	18.0	0.7	1	23	843	865	843	865	0.97
12	17	4.4e-06	0.00052	21.5	0.6	2	23	874	896	873	896	0.96
13	17	3.5e-05	0.0041	18.7	0.4	3	23	903	923	901	923	0.97
14	17	5.7e-05	0.0067	18.0	0.7	3	23	933	954	931	954	0.96
15	17	4.8e-06	0.00057	21.4	0.5	2	23	964	986	963	986	0.97
16	17	5.7e-06	0.00068	21.2	0.8	2	23	993	1014	993	1014	0.97
17	17	0.0058	0.69	11.7	3.6	1	23	1020	1043	1020	1043	0.96

Sequence Information

Coding Sequence: ATGAATTGTTTTgtctgtttaaaaataaatgataataGCAAAGACTCCATCAGTTTTAGTTCTACCGACTGGAATGAGTTCAAAATAGAATACATCATTGAAAAACATCTGTGGAAAATGgacaatttaaataataactccTTCATATGCCAAGCATGTTGGCAGgagttaaataatttccataacTTCTACCTAATAATCGAAAAAGCCCATACTAGTTTAAATGGTATTGTAAAATCAGAGATCATTTTCGAAGACGATCCAATTGATAACGGAGATCCATCTGAAAAAATTTGTACGGAAAGCGAAGAAAATTCTCAAGTTGATATTAACACTTTATTCTTAAAGGACGAAAATCCGTTTGAGATTTGTGTAGAAAAAACTACGGATGGAAatctttgtatgaaaaaaagaaattcagtcCATACCATTCAgtcaaaaagcattaaaaataacaagCAAAATGTAAAAACTGTAAAAAGATTAGCATGTTTAAAACCAGATCAAAATAGCACGGGAGCACGAAAAATGGAAGATAATAACAGGGACGAAAGAActacagaaatttttttaaaaaatgatgTGGATAGTAAACCTTCTTTAAAGAAAAGGGCTAAACGTAACATTGATTTGAAGAAAAaaaatgacTCAAAAGAAATGAAGTTGGATGATAATATTAGCGATCAAAATGATAGTTTGGAAAGTGCTGACGACGACCCTTTATCAGCTTTGgttgataaattaaaattagaacaattacaAGAAGAACATGATAAATTCATTGCCGaaaatttccaaattaattGTTCCCTTTGTGAAATCGTACTGCCTTCATATGCTGTAATGTGTACACACTACAAAGAGGAGCACAATCAGCGTGGATATGTTACTTGCTGTAATCAAAAGCTTAACTCTCGCACAGAAATAGTCGATCACattaacatacacaaaaatCCCGATTGTTTCAAATGCGAACAATGCGATAAAAAATTGTCCAGCCGTTCTGGCCTCAAGCTGCACATAAAAAATGTtcatgaaaagaaaattgtgaaATGTGAAATATGTGGAAAAGGCTTAGCAAATGAATCAAGTCTGAAATCGCATAAATTACTacatgaagaatataataaagATAGATTACCTTGTAAACATTGTGACAAGTTCTACCTCACCAAAGCTACCTTAAATAAGCATATACGACTtgctcatttaaaaaattatataatttgcgATCTATGTGGTAAGTCTCTATCGGACGGTTACAGGTTTAATCGTCACATGTTAAAGCACGAGGGAAAAGTAAAATCAAAAGTTAGCTGCGAAGTTTGTGGACGCATTTTATCTGATATGCCATGTTTGAAGCGACACATGCGCTCAAACCATCCTCCAGATGGAGTAAGAGCAAAACTCAATTGTCATATATGCTCAAAAGTATTTGCAAATACGTCTTATCTTAAAATGCACATAAGGAGGGTACACGAACATAAATACTCAAGAAAGTGTACATTGTGTGAGAGAACATTTTGCAGCCCTGCCGCCTTGAAggATCACATGGGAAGTCATACTGGTAGACCTGTGAGCGCTTGTGGTTTCTGTTCTAGGACATTTTATTCAAATGGCAATATGCATGCGCATCGCAAAAGAATGCATCCCgaaaatttaaataatcattccTACATATGCCAAAAATGTTGGCACGAACTAcatcattttcataatttctacTTAAATATCGAGAAAGCTCATACAAAGTTAACTATATTAAAAACAGAGATTGTTTCGGATGATGTTTTAAACGATAAAGGAGTACATATTATATCAGCTACCACTGACAATACTCATACCGAAcctgaaagtttatttttaaaggaaGAAAGCCCTTCAGAAATTTTTGAAAGCGAAGAGGAGGAGAAGATTAGGTGTTTTGAAAAACCAACGACTACAGATACAAGCTCTGTCGTAAACGCAATAGCAAGCGACACTAAAAATATACAATGTACAACTGAAGAAGAACAAATTGACAAAAtaagacttaaaaaaataagagcTGCAACTAACATAAGCAAACTAAAGGTTAGTAACAATGAAGATAAAATTGGCGTACAACTAAATAAAGGAGAAGATGATTCTAAGAAGGCCAAGATGGTTGATAATTTTAGCGACCACGAATATAGTTTGGAAAGCGATGAAGACGATCCTTTGGCAAATTTGGCTGAAACATCTAAGTTAGAACGATTGCAGCAAAAACAAGATAAGTTTATagccaaaaattttcaaattaactgtTCTCTTTGTGAAATCTCACTTGATTCATATGCAGTAATGTGTACACACTACAAAGAGGAACACAATCAACGTGGATATGTCACTTGCTGTAATCAAAAGCTTAATTCTCGTTCAGAAATAGTGGATCATATCAAAGTGCACCAAAATcctgaatattttaaatgtaaaaaatgtgGTAAAATAACATCTAATCGCGTGGGGTTAAAGCTGCATTTTAAAAACATTCATAGCgagaaaaacttcaaatgtgACACTTGTGGCAAATCTTTGGCTAATGAATCAAGTTTGAAAACGCATAAATTACTACATGATGCTGATAATGTAGGAAGATTGCCCTGCGATCAATGTGATAAGTCataTACATCGAGACATGCGTTGAACAATCACATTCGCATTATTCACTCAAACAAATATGTTATTTGTGACGTATGTGGTAAATCTCTGTCGACAAATTACAAATTCAAGGTGCACATGTTAAAACATGAAGGAATAAGGAAACCACccgttatttgtaaaatatgtggGCGCACTTTATCGGACATTGGTTGTTTAAACCGACACATGCGCTCGCTTCATCCTCCGAATGGAATCCAATCTGAAATTAAGTGTCCTATGTGTACGACaatattcaaaaacaatgaGAATCTTCAAATGCATATAAAAACTTTGCACGAAAAGAAATATGAAAGGAAGTGTACAATGTGCGGGAAAACATTTATAAGACTTGGTTCCTTAaaggaTCATATGTCTCTTCATATTGGGAAACCTAAACACGCTTGTGGGTTTTGTCCGAAGATATTCTATTCAAGTGGTAATATGCACACACATCGCAAAACAATGCATCCAAAAGAATGGCAGTTATCTGTATCGGAAAGATTTCGTGGAAagtcaacaaaaacaaaaagaaatgatgtagaagaatga
Protein Sequence: MNCFVCLKINDNSKDSISFSSTDWNEFKIEYIIEKHLWKMDNLNNNSFICQACWQELNNFHNFYLIIEKAHTSLNGIVKSEIIFEDDPIDNGDPSEKICTESEENSQVDINTLFLKDENPFEICVEKTTDGNLCMKKRNSVHTIQSKSIKNNKQNVKTVKRLACLKPDQNSTGARKMEDNNRDERTTEIFLKNDVDSKPSLKKRAKRNIDLKKKNDSKEMKLDDNISDQNDSLESADDDPLSALVDKLKLEQLQEEHDKFIAENFQINCSLCEIVLPSYAVMCTHYKEEHNQRGYVTCCNQKLNSRTEIVDHINIHKNPDCFKCEQCDKKLSSRSGLKLHIKNVHEKKIVKCEICGKGLANESSLKSHKLLHEEYNKDRLPCKHCDKFYLTKATLNKHIRLAHLKNYIICDLCGKSLSDGYRFNRHMLKHEGKVKSKVSCEVCGRILSDMPCLKRHMRSNHPPDGVRAKLNCHICSKVFANTSYLKMHIRRVHEHKYSRKCTLCERTFCSPAALKDHMGSHTGRPVSACGFCSRTFYSNGNMHAHRKRMHPENLNNHSYICQKCWHELHHFHNFYLNIEKAHTKLTILKTEIVSDDVLNDKGVHIISATTDNTHTEPESLFLKEESPSEIFESEEEEKIRCFEKPTTTDTSSVVNAIASDTKNIQCTTEEEQIDKIRLKKIRAATNISKLKVSNNEDKIGVQLNKGEDDSKKAKMVDNFSDHEYSLESDEDDPLANLAETSKLERLQQKQDKFIAKNFQINCSLCEISLDSYAVMCTHYKEEHNQRGYVTCCNQKLNSRSEIVDHIKVHQNPEYFKCKKCGKITSNRVGLKLHFKNIHSEKNFKCDTCGKSLANESSLKTHKLLHDADNVGRLPCDQCDKSYTSRHALNNHIRIIHSNKYVICDVCGKSLSTNYKFKVHMLKHEGIRKPPVICKICGRTLSDIGCLNRHMRSLHPPNGIQSEIKCPMCTTIFKNNENLQMHIKTLHEKKYERKCTMCGKTFIRLGSLKDHMSLHIGKPKHACGFCPKIFYSSGNMHTHRKTMHPKEWQLSVSERFRGKSTKTKRNDVEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -