Lvul029108.2
Basic Information
- Insect
- Linnaemya vulpina
- Gene Symbol
- -
- Assembly
- GCA_963675445.1
- Location
- OY776280.1:16956125-16965523[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.022 2.6 9.9 0.1 2 23 235 257 234 257 0.91 2 18 0.95 1.1e+02 4.7 0.0 6 23 266 283 266 283 0.96 3 18 0.0025 0.3 12.8 0.9 1 23 289 312 289 312 0.97 4 18 0.0017 0.2 13.4 4.8 1 23 322 344 322 344 0.99 5 18 3e-05 0.0035 18.9 4.0 2 23 351 373 350 373 0.94 6 18 4.1e-05 0.0049 18.5 1.5 1 23 379 401 379 401 0.94 7 18 1.3 1.5e+02 4.3 0.3 2 23 410 431 409 431 0.95 8 18 0.00017 0.02 16.5 0.9 2 23 437 459 436 459 0.92 9 18 2.8e-05 0.0034 19.0 0.4 2 23 466 487 465 487 0.96 10 18 1.2e-05 0.0014 20.2 1.8 1 23 493 516 493 516 0.98 11 18 0.17 20 7.1 2.7 2 23 545 566 545 566 0.96 12 18 0.0004 0.048 15.4 1.8 2 23 572 594 571 594 0.92 13 18 4.7e-06 0.00055 21.5 0.4 2 23 601 622 600 622 0.96 14 18 8.2e-05 0.0097 17.5 3.6 1 23 628 651 628 651 0.98 15 18 0.051 6 8.7 2.9 2 23 687 708 687 708 0.98 16 18 6e-06 0.00071 21.1 1.5 1 22 713 734 713 736 0.89 17 18 9.5e-06 0.0011 20.5 0.4 2 23 743 764 742 764 0.96 18 18 1.1e-05 0.0013 20.2 2.4 1 23 770 793 770 793 0.98
Sequence Information
- Coding Sequence
- atgatttgtcGTTTATGTTTAAAAGAAACTCCCGATGAATCTTGTatcaaattatatgaaaattcggATCCACCGACAGAGTCTATACAAATGTTGAAGCTAATTGACAAATACCTTGAAATAGAAATTAAGCATAATGACATTGTATCCACTATTATTTGCCAAGATTGTTATGACCATTTAGATGAGTTTCATAGATTTTCGCAACAAGTAGCCGAAAAGCAATTAACACTGCGTAATGAGTTTTTGGATGTAAACTTGaagaaagaatttaattttgatgatgATGGTTGGGACAATAATGGACAGGGTGAAAAATGCGCCATGAACTCAGAGGAAGGGATGACAGTTACATGTCCAATAGATATGTTCAAAAATGAATCAGATAATGATGAGAAAGATGAGCAAGAGATGCCGACAgaagatttatttgaaaatgttataaataatgaTGAGAAGGATATCATAGCGCCAGATAGTGTGGCTCCAAATGCGGAGTCGAGTATGAATGACCAACTATCATCAGATGatgacgacgatgacgttccattaataaaattgaaatctaCTAAGAATCCAActcagaaaagaaaaataaagaaagttaAAAAGGCAACATCCCAACGTCGCGAGCGTAAGGAAAAAAAACCAGCAAAGAAGAAATTACCTGCAGAAAAAGAAGTGGCATTATTGATGGATCTGAAATGTGACATATGCCAGACACGTGTTGACACATGGAAAGCTTTGAGGGAACATTTTCTGTTAGCACACACCAAAAcaccatatattaagtgctgtGATATTGTTTATCGCAAGCCACGAGCTCTAATGGAGCACCTTGAGTGGCATAAAAATCCAGATATGTTTATatgCCAAATTTGTGATAGAAATATGTGTAGTGCGCGTAATTTAACTATACATATAACAACCGAACATCCCGATGAAGCAGACATAATAGAGTTTTACGAATGCGAGCATTGTTCGAAACGTATACGGAATTAcaacttatttaaaaagcatttaCGATCACACAATAAGGACAAGGAAGTGGAATGTCATATATGCAATAAAAGatTTACATCAGAATACCATTTATATCGTCATATCAgtaattttcataagaaaaccCCTCCTCATATCTGTGATATATGTGGCCGTACATATAAGAATAAAGCTGCATTTAAACGTCATTATGATGAGCATCAGGGTATTGTTTCTAAAGCAGTACAGTGTTCGATTTGCAGCACATGGCTCAAGAATGAAGATACGTTACGTTTGCATCGTTTTATTCATGAGGAACATCCAACGCCTTGTGATGTTTGTGGTAAAATGTTCAAAACAAAACGTAGGCTATATAGACATAAAATATACTGGCATAAATTGGACACGAATTTACAGTGTAGTTTTTGCGACAAAGTATTTCGTGAAAAGCGCAATCTTGATGAACACATGGCCATACACACCGGAGTTCAACTTTATACATGCCCTCATTGTGGCAAAGACTCACGCTCGAAATCAAATATGTATGTGCACATTAAAAGGATACACCCAGATGAATGGTGGAAATCGAAAATGGAACGTCTGAACTTGAAACCGAAAAATGCCCATCAGGGAATTATTGAACCTGCCGCACAATGTTCTATATGTGATAGATGGCTTAAAAACAAGCACAGTTTGCGATTGCATCGTTTCGTCCATGAAAAAAATCCAACGCCCTGTGATGTATGCGGAAAAATATTCGAGACTAAACATCGACTGCGCAAACACAAATCCTACTGGCACAAGTCCGACTTGAATTTGCAGTGTAACTTTTGTGAGAAAGTGTTTCGTCAGGAACGTAATCTGCAAGAACATATGGCCATACACACAGGAATGCAGCTGTATAAGTGTCCACATTGTCAAAAGGAGTCACGTTCGAAATCAAATATGTATGTTCATATAAAGAGGCAACATCCAACTGAGTGGTGGAAATCTAAAATGGAACGTCTGAATATAGACCCAAAGacATCCTTCCAAAAACACTATGACGAACATCAAGGCATTGTTGAACCTCCAGCTCAATGTACAATCTGTGGGGCATGGCTAAAAAATCAGCACAGTCTACGTGTTCATCATCAAACACACGAAGATACTCAATTCGCGTGTGATATTTGtggtaaatttttcaaaactaaaaaaaatttgagtcgACACAAAGGATATTGGCACCGAAGAGAGCGTAATCTTTCGTGCAGTTATTGCGACAAGGTGTTTCGTGAAAAGCGTAATCTTGACGAACACATGGCCATGCATACAGATACCAATCTGTATACATGCCCACATTGCGGCAAAGAGTCAAGATCGAAATCAAATATGTATGTTCATATAAAAAGACAGCATCCAGATGAATGGTGGAAGTCAAAACAGGAACGTTATAACTTAAAACCCGATGAGATAGGATCAGGAAGAGGCTTAGATGAGCTAAAATATAAGTCATCAGTAGTGGAAACAGCTCCTCATACGCAGGAATGTACAAATGCGGATTAA
- Protein Sequence
- MICRLCLKETPDESCIKLYENSDPPTESIQMLKLIDKYLEIEIKHNDIVSTIICQDCYDHLDEFHRFSQQVAEKQLTLRNEFLDVNLKKEFNFDDDGWDNNGQGEKCAMNSEEGMTVTCPIDMFKNESDNDEKDEQEMPTEDLFENVINNDEKDIIAPDSVAPNAESSMNDQLSSDDDDDDVPLIKLKSTKNPTQKRKIKKVKKATSQRRERKEKKPAKKKLPAEKEVALLMDLKCDICQTRVDTWKALREHFLLAHTKTPYIKCCDIVYRKPRALMEHLEWHKNPDMFICQICDRNMCSARNLTIHITTEHPDEADIIEFYECEHCSKRIRNYNLFKKHLRSHNKDKEVECHICNKRFTSEYHLYRHISNFHKKTPPHICDICGRTYKNKAAFKRHYDEHQGIVSKAVQCSICSTWLKNEDTLRLHRFIHEEHPTPCDVCGKMFKTKRRLYRHKIYWHKLDTNLQCSFCDKVFREKRNLDEHMAIHTGVQLYTCPHCGKDSRSKSNMYVHIKRIHPDEWWKSKMERLNLKPKNAHQGIIEPAAQCSICDRWLKNKHSLRLHRFVHEKNPTPCDVCGKIFETKHRLRKHKSYWHKSDLNLQCNFCEKVFRQERNLQEHMAIHTGMQLYKCPHCQKESRSKSNMYVHIKRQHPTEWWKSKMERLNIDPKTSFQKHYDEHQGIVEPPAQCTICGAWLKNQHSLRVHHQTHEDTQFACDICGKFFKTKKNLSRHKGYWHRRERNLSCSYCDKVFREKRNLDEHMAMHTDTNLYTCPHCGKESRSKSNMYVHIKRQHPDEWWKSKQERYNLKPDEIGSGRGLDELKYKSSVVETAPHTQECTNAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -