Lvul032770.1
Basic Information
- Insect
- Linnaemya vulpina
- Gene Symbol
- -
- Assembly
- GCA_963675445.1
- Location
- OY776280.1:75321670-75325232[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.1e-05 0.0012 20.3 0.2 1 23 187 209 187 209 0.97 2 15 0.00016 0.019 16.6 1.3 1 23 215 237 215 237 0.99 3 15 1.9e-06 0.00023 22.7 1.4 1 23 289 311 289 311 0.98 4 15 2.2e-05 0.0026 19.3 0.3 1 23 420 442 420 442 0.96 5 15 0.017 2 10.3 0.9 1 23 448 470 448 470 0.94 6 15 4.4e-06 0.00053 21.5 0.5 1 23 487 509 487 509 0.98 7 15 0.0052 0.62 11.9 0.6 1 23 518 541 518 541 0.95 8 15 0.0025 0.3 12.9 4.8 1 23 547 569 547 569 0.98 9 15 4.9e-05 0.0058 18.2 0.3 2 23 576 597 575 597 0.97 10 15 2.4e-08 2.9e-06 28.6 0.7 1 23 603 625 603 625 0.96 11 15 0.002 0.24 13.1 1.3 1 23 631 653 631 653 0.98 12 15 4.4e-05 0.0052 18.4 1.6 1 23 659 681 659 681 0.96 13 15 3.7e-05 0.0044 18.6 3.2 1 23 687 709 687 709 0.99 14 15 6.7e-07 8e-05 24.1 0.7 1 23 715 737 715 737 0.99 15 15 5.7e-05 0.0067 18.0 0.4 1 23 743 765 743 765 0.97
Sequence Information
- Coding Sequence
- atgtataaaaacttGAGCTCCAAGTGTCGCACCTGCTTATGTGAATCAGATTTCTACCATCAACTATATGATTATGtggaagaaaattataaaattctggAAATGTTGGAGGGTATAGTGCCACAAATTGATATTAAGTCATCATCCCAATTTCCCACATTAATGTGTCAGATCTGCGTAGATAAATTGCTAAGCGGCTATAAATTTCAACAATTGTGCATAGAAACTAATAATCGGCTACATGATTTATTGGGGATCACCGTCTTTGAATCGGAACCGAAATTGGAAAAATCATTGGACCCCTTGACGAGCGAATCGAATATTAAGTTGAAGCAGGAAATTGAAGACGCTTATTTTGAAAGCGATCTACCACCCGATGAATTAGAAGAGGGAGTGATGTCGGACAATAATAACTGGCTTCCAGATGATGGCTGCGGTAGGGACACTGACTCGAGCAATGAAAAATTATCGGTTTTAAAGGAAAGATCTACAAAAGAAACACCTTTCAAGATTGAAAACTTTGAAAAaccacataaacaaaaaagtcGCAAAGGCTGGTTTCCTTGCACTGAATGTGGTAAGGATTTTACGAGTTTGAATCGGTTAAACCGACATATAGCTATACATGATAAAAAGCGGTCTTATTCATGTAAAATTTGCAATACTAGCATAAGgtcagataaaaattttaaagctcaTATGCTTACACATACGAATGAAgatgatttcaaaaatattacaaaaagtaaagACAGTGTGGAAAATATTGATTGCAAAAGTGAAACACACGAAGTTTTGGATGAACAGAAAGTAACGGATGAAGAAAATCACATCGATTGTGATGACTCCAAAGGTCTGTTCACGTTTCAATGTCCCGAATGcccaaaatgttttgaaaaaaaagcttCATTATCTGCTCACTATAAAGTTCAcaagaaaaaagattttgttaaaaacaaaagcaaatatgCTGAGCCGTTCTTGCAAGATGCTGAGGAACTTAGTTCACCCGATAAATCTCAAGATAAAGCGAATGATGTTATACATAAAATTGTGAAAGAAGAAGTAGAAATCCCCTTACAAATGattgatgctgatgatgattgGCTGAATAATGAATATGAGGACTCAGATGATGATTCCGAAAGTgaacttttgaataaaagtgGAATAaaggaaactaaaaatattgactTTGTGGACACCGGTATAGGCGAAGTTGAAAAGCCAAATAGCAGCAACAAAAGAAATGGAAATTTTCCCTGTGAAGTGTGTGGCAAAATATTTGATCGTCCTTATCGCCTCAAACGACACAGTTCAGTACATTCTCTTGCAAGGCCACATGAAtgtgaaatttgtaaatatcGTTTTGCTACAGCAAACATTCTAAAAGCCCATTTGTTTCAGCATAAAAATGAAACAGGAGGGAATTTTCATTCTCAAATTCGACCCGAAGGCTTTAAGTGTCCCGATTGTCCTAGACGTTTTGAAAAACAGGCTTCACTATCAGCGCATCGACAAAGTCACACGCGCAACACTTCAGAAGCGAATTATCCTTGCACAGTATGTCAACGAAACTTTATGTCAATAAGATCCTTAACCGAACACATTACAAACAAACATCCAGAAGTTGAAAAACATAAATGTGATCAGTGCGAAAAAACGTTTGTTCTACACGCCCATTTAGTTGAACATTTAAATCGTCACAAGGGGAACAGAAATTTAGTATGTTTAATATGTGAAAAAGAATTTGGATATAATAATACGTTAAAGGAACATATGCGCACACATAGTGGTGAAAGTCCTTATCTTTGCCCTCAATGTGGTAAAACATTTCGTAGTGCAAGTAATTTACGTCAGCATATGGAAAGACATACcggtttaaaaaagtaccagtGTCCAGAGTGTCCCAGTCGTTTTAACTGCCGATCAGATTTGATAAAACATGCATCAACACATTCGAATGCAAAACCTCATGTCTGTGATATTTGTGGCTCCCGATTCACAAGAGCATATTCGTTGCAAAAACACAAGCTACTACATTCGGGAGAAAGACCATTCAAGTGTGATCAATGTAGTATGacTTTTGCCATAATATATCATTTGCGACGCCACATGCGCACCCACACCGGTGAAAAACCATACAAATGCAAATATTGTGATCGAGCTTACGCCGAAAGCGGCGATTTAACTAAACATTTAAGAACGCATGTCGGTGAAAATACATATATGTGCGATCAATGTCCAATGGCTTTTAAATATCAAGCTGAATTAAGGCAACATCAGTCACAACATTATAAAATGGCACAAAAACTTTTGCAACAAACACAAAGGCTCTCAGAAGAAGTACAGCAAGGAGTATCCGCTCAAGAGCAGCATAATTTGCTGCAGCAACATGAATATCTCATACGACAACAAGAACAACCATTGTTAAAACCTGGGCTGATGCAACATTTGCCTATAGGTGTTTCGGGTTATCAGCAAATACCGCTAATAGATCATAGGCAACAGCAAGTGGCACCAATAGCAGAACACAACCAAAATCATACTGAAATTGAAGATATTGTTTTAGCTCGACAGCACGAAGGAAATTTAGATATAAAGAATCtcagcaattaa
- Protein Sequence
- MYKNLSSKCRTCLCESDFYHQLYDYVEENYKILEMLEGIVPQIDIKSSSQFPTLMCQICVDKLLSGYKFQQLCIETNNRLHDLLGITVFESEPKLEKSLDPLTSESNIKLKQEIEDAYFESDLPPDELEEGVMSDNNNWLPDDGCGRDTDSSNEKLSVLKERSTKETPFKIENFEKPHKQKSRKGWFPCTECGKDFTSLNRLNRHIAIHDKKRSYSCKICNTSIRSDKNFKAHMLTHTNEDDFKNITKSKDSVENIDCKSETHEVLDEQKVTDEENHIDCDDSKGLFTFQCPECPKCFEKKASLSAHYKVHKKKDFVKNKSKYAEPFLQDAEELSSPDKSQDKANDVIHKIVKEEVEIPLQMIDADDDWLNNEYEDSDDDSESELLNKSGIKETKNIDFVDTGIGEVEKPNSSNKRNGNFPCEVCGKIFDRPYRLKRHSSVHSLARPHECEICKYRFATANILKAHLFQHKNETGGNFHSQIRPEGFKCPDCPRRFEKQASLSAHRQSHTRNTSEANYPCTVCQRNFMSIRSLTEHITNKHPEVEKHKCDQCEKTFVLHAHLVEHLNRHKGNRNLVCLICEKEFGYNNTLKEHMRTHSGESPYLCPQCGKTFRSASNLRQHMERHTGLKKYQCPECPSRFNCRSDLIKHASTHSNAKPHVCDICGSRFTRAYSLQKHKLLHSGERPFKCDQCSMTFAIIYHLRRHMRTHTGEKPYKCKYCDRAYAESGDLTKHLRTHVGENTYMCDQCPMAFKYQAELRQHQSQHYKMAQKLLQQTQRLSEEVQQGVSAQEQHNLLQQHEYLIRQQEQPLLKPGLMQHLPIGVSGYQQIPLIDHRQQQVAPIAEHNQNHTEIEDIVLARQHEGNLDIKNLSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01138235;
- 90% Identity
- -
- 80% Identity
- -