Lvul016377.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Linnaemya vulpina
Gene Symbol
-
Assembly
GCA_963675445.1
Location
OY776277.1:98632429-98642403[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0011 0.12 14.0 0.8 3 23 240 260 238 260 0.97
2 15 7.3e-07 8.7e-05 24.0 1.5 1 23 266 288 266 288 0.97
3 15 1.6e-06 0.00019 22.9 0.4 1 23 294 316 294 316 0.99
4 15 0.00094 0.11 14.2 2.9 1 23 322 344 322 344 0.97
5 15 3.4e-05 0.004 18.8 2.7 1 23 350 374 350 374 0.93
6 15 0.0031 0.37 12.6 0.5 1 23 659 681 659 681 0.97
7 15 1.1e-05 0.0014 20.2 2.0 1 23 687 709 687 709 0.99
8 15 1e-05 0.0012 20.4 0.9 1 23 715 737 715 737 0.99
9 15 9.3e-05 0.011 17.4 4.1 1 23 743 765 743 765 0.96
10 15 7.4e-07 8.8e-05 24.0 2.2 1 23 771 795 771 795 0.92
11 15 0.0058 0.69 11.7 1.6 1 23 1074 1096 1074 1096 0.97
12 15 2e-05 0.0024 19.5 1.3 1 23 1102 1124 1102 1124 0.99
13 15 4.4e-06 0.00052 21.5 0.7 1 23 1130 1152 1130 1152 0.99
14 15 1.2e-05 0.0015 20.1 2.3 1 23 1158 1180 1158 1180 0.99
15 15 3.6e-06 0.00043 21.8 4.6 1 23 1186 1210 1186 1210 0.92

Sequence Information

Coding Sequence
ATGACTGCATTAAATCCCGATTTATCGAAGCCGACTTGTCGAGTATGTTTACAAAACAACCAAGAGGACGATATGTCTTCAATATTTGATATTGATGCCGAATTCTATGAtcacatatacaaaaaaattgaaCAGTGTGCCGATATTGAGATATTGCGCCATGCTGAAATGCCCAGTTTAATATGTGACAACTGTTATGGACTTCTAAAAGTATCTTACAAATTTCGGACGATATGCCGAAATTCCAACGAATATTTGTTACAATTTGTAGCTTTAGAAACAAGTTCAAAAGTAGAAGAATGTTGCATGGTGAATCCTTTGTCTACATCGGAATGCATTTCAAAAAGTAATGAATCTATCTTCGAATACAAAAAAGATTCAAAAGACTTAGAAGAAATtattacaattgaaaaaaatgatCAGTCAGATTCACGACTAAACTCGGAAACACTTTTTGAAGAGAGCTTTGATGGGGAAGAGTGGTTTGATATTAATTATCCAGATGATGACGACGATATATCTTGTGGCGAAAATGCTGATCTAGAATATAATGAAGCAGAGGAGCCTGATAAACTTGAGCAAAAATCcaatgtgaagaaaaaaaatgttagtgCTGAATGTTCGAAAACCTTAGAAATCTCTTCGGATGGTACTCCAATTATACGCGAGAAAAAACACCGTGCCAAGAGAAAGGGGAATGAATCGCAACGtcaaatatgtgaaatttgTGGCAATATATATCAACGTCTTCATTCCTTGGAACTCCATATGAGAAAGCATCGAGATGAAAAACCATTTGCATGCGAaatTTGCGGGCATGCTTTTCCTAGCAATTTCCAGTTAAAACGCCATATGCGCAAACATACAGGTGACCGACCTTACAAATGCAGCTACTGTCCTCGAGCCTTTGGAGATCAATCAACTTTAATAAAGCATGAAAgagtACATCGCAATGAACGACCATTTAAGTGTGAAACATGCGGGAAATGTTTTTCGTATACTGGTGTTTTGAATTACCATAAACTCGTACATACTGGAGAAAAGCCTTACGCctGTGAGCTTTGTGGTAAATGTTTTCCTAGGGCTCATAAATTACGCGAGCATTTAAAAACGCTTCAACATGTGAATGATCCCAGATCTAAAATACttctggaaaatataaaaagaaacaatgaAACTGAAACGTTAAAAGTGGCAAATATTACACTAAAGGTTTCAATGACTACAGTAAATCTGGATTTAACAAAGCTCACATGTCGAGTATGTTTACAAAGCAGTCATGATGAAATGTCCTCAATTTTTGATGTAGATACGGATTTCTATGATATTTGTATCTATGAAAAAATTGAGCAATGTGCTGGTATTAAGGTATTGCGCCACGAAAAAATGCCTACTTTAATATGTGGCGATTGTTATGGGTTCTTAAAAATATCGTACAGATTTCGCATAATTTGTCGAAACTCTAacgaatatttaaaagaatttgttgCTATAGATTTGGCAAACACGAAAATAGAGGAATATGTAGAACAGAATCCTTTATTAATACAAGGAAACGCTCGCATAGAGGAAGATAAACTGtccaaaaacaaaagcaaactaaaatataaaccaaaaacatcATTTCAACCGATTGAAACTTGTCAAGATAGTAGTACCTGCTCACCTATTACAAAACCCGAAGATTATGTTGAATACAATATAAATGAAGGTGAAGTCGAGGCGTGGTTTGTTGGTAATGAAGAGGATATATCCCGGACGGAAAATGTTGAAGCTTCTGTAGAAAAAATTAACTCATATGTTAAGAcggaaaaagttaataatatatcTATTCAGCACAAGAAAAACACTTTTGTAAAGGAAGAAAAGAATAATACTACTCCTTCGAAAACCTTGGAGATATCTTCAGATGGCGCAGCAATTATACGGGAGAAAAAACCGCATACAAAAAGTGAGAAAAAAGACAAACAGCCTCATATATGTGATGTTTGTGGTAATATATATCAACGTCGCTACGCGTTGGAACTTCACGTGAGGAGACATCGAGACGAAAAACCTTATGAATGCgaAATTTGTAGTTATGCGTTTCATAGCAATTTTGAGTTAATCCGTCATATGCGAAAACACACAGGATCAAGACCATATAAATGCAGCTATTGCTATCGAGCATTTGGCGATCAATCAACTTTAATAAAGCATGAAAGAATTCATCGCAACGAAAGACCTTTTACATGCGATACATGtggaaaaagttttacttattcGAATGTATTAAAACATCACAAATTAACACATACTGGAGAAAAACCATACAGTTGTGAACTGTGTGGAAAAAGCTTTACGCGGCCTCATCACTTACGCGCTCATTTGGAAACACTTCAACATCTGAGTGATCCGAGGTCTAAAATACTTTTGCAGAATATCAGAAAAAACAATGATGATGAAATATCAAAAGTAGAAAATTTTACACATTTAATGACTACATTAAATCCAGATTTAACAAAACCCACATGTCGAGTATGCTTACAAAGCAGCCAAGATGAAATGCCCTCAATTTTTGATGTTGATGTGGATTTTTATGATCTTCGaatctttgaaaaaattgagcAATGTGCTGGTATTAAgGTATTGCGCCATGAAAAAATGCCTACTTTAATATGTAGCGACTGTTATGGGTTCTTAAAAGTCTCTTATAGATTTCGGGTAATTTGCCGAAACTCGAacgaatatttaaaagaatttgtagCTATAGATATACCAAACACAAAAATAGGGGAATCTGTGGAACTAAATCCTTTACTAATATCAGGAAACCCTCCCACAAATCAAGATGAATGCTCCCAATATAAAGGTAAACTAAGAGATAACCAAAGCCCATCACATCAAACCATTGAAAATCATCAAGATACCACCTGTTCCTCTATTACAAAATCCAAAGAGTGTGTTGGTGACAATatcaataaaagtaataatGCTGTCACGCGGTTTAATGTTAACGAAAAGGATATATCCCGTACTGAAATTGTTGATGATAATTCTATAGAAAAGACTAATTTATGTATTACGACGGAATCAGTTGATATTAAGCGCAAGAAAAAATTGATTGGGAAGGAGGACAATGATAGTACCGCTTCTTCTAAAACTTTAAAGATGTCTGCAGGCTGTGCTGCAATTATACGTAAGAAAAAACCGCACACTAAAAGGGGGAAAAAGGAGAAACATATATGTGATGTGTGTGGTAATATATATCATCGTCGCTACGCCTTGGAACTCCATGTGAGGAGACATCGcgatgaaaaactttttaaatgcgAAATTTGTGGATACGCGGTTCATAGTAATTTTGAGTTAATCCGACATATGCGAAAACACACAGGATCTAGACCATATAAATGCAGCTATTGCTCTCGAGCGTTTGGAGATCAATCAACTCTAATAAAACATGAAAGAATTCATCGCAACGAAAGACCTTTTACATGCGATACATGtggaaaaagttttacttactCAAATGTATTGAAAGATCATAAACGAACACATACTGGAGAAAAACCATACAGtTGTGAACTGTGTGGAAAATGCTTTACAAGGCCTCATCACTTACGCGCTCATTTGGAAACACTTCAGCACCTGAGTGATCCAAGGTCTAAAATACTTTTGCAGAATATTAggaaaaacaatcaaaatttattatcaaaactagacaattttgcattaaaaatataa
Protein Sequence
MTALNPDLSKPTCRVCLQNNQEDDMSSIFDIDAEFYDHIYKKIEQCADIEILRHAEMPSLICDNCYGLLKVSYKFRTICRNSNEYLLQFVALETSSKVEECCMVNPLSTSECISKSNESIFEYKKDSKDLEEIITIEKNDQSDSRLNSETLFEESFDGEEWFDINYPDDDDDISCGENADLEYNEAEEPDKLEQKSNVKKKNVSAECSKTLEISSDGTPIIREKKHRAKRKGNESQRQICEICGNIYQRLHSLELHMRKHRDEKPFACEICGHAFPSNFQLKRHMRKHTGDRPYKCSYCPRAFGDQSTLIKHERVHRNERPFKCETCGKCFSYTGVLNYHKLVHTGEKPYACELCGKCFPRAHKLREHLKTLQHVNDPRSKILLENIKRNNETETLKVANITLKVSMTTVNLDLTKLTCRVCLQSSHDEMSSIFDVDTDFYDICIYEKIEQCAGIKVLRHEKMPTLICGDCYGFLKISYRFRIICRNSNEYLKEFVAIDLANTKIEEYVEQNPLLIQGNARIEEDKLSKNKSKLKYKPKTSFQPIETCQDSSTCSPITKPEDYVEYNINEGEVEAWFVGNEEDISRTENVEASVEKINSYVKTEKVNNISIQHKKNTFVKEEKNNTTPSKTLEISSDGAAIIREKKPHTKSEKKDKQPHICDVCGNIYQRRYALELHVRRHRDEKPYECEICSYAFHSNFELIRHMRKHTGSRPYKCSYCYRAFGDQSTLIKHERIHRNERPFTCDTCGKSFTYSNVLKHHKLTHTGEKPYSCELCGKSFTRPHHLRAHLETLQHLSDPRSKILLQNIRKNNDDEISKVENFTHLMTTLNPDLTKPTCRVCLQSSQDEMPSIFDVDVDFYDLRIFEKIEQCAGIKVLRHEKMPTLICSDCYGFLKVSYRFRVICRNSNEYLKEFVAIDIPNTKIGESVELNPLLISGNPPTNQDECSQYKGKLRDNQSPSHQTIENHQDTTCSSITKSKECVGDNINKSNNAVTRFNVNEKDISRTEIVDDNSIEKTNLCITTESVDIKRKKKLIGKEDNDSTASSKTLKMSAGCAAIIRKKKPHTKRGKKEKHICDVCGNIYHRRYALELHVRRHRDEKLFKCEICGYAVHSNFELIRHMRKHTGSRPYKCSYCSRAFGDQSTLIKHERIHRNERPFTCDTCGKSFTYSNVLKDHKRTHTGEKPYSCELCGKCFTRPHHLRAHLETLQHLSDPRSKILLQNIRKNNQNLLSKLDNFALKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-