Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0015 1.4 10.2 2.7 18 38 39 60 27 63 0.86

2 6 0.12 1.2e+02 4.0 5.1 6 30 56 80 55 88 0.74

3 6 0.052 51 5.2 4.4 5 31 79 109 77 117 0.73

4 6 0.0006 0.59 11.4 4.9 5 38 111 144 107 145 0.80

5 6 0.013 13 7.2 4.7 9 38 143 172 139 178 0.79

6 6 0.002 2 9.7 5.4 8 38 170 200 165 207 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0015	1.4	10.2	2.7	18	38	39	60	27	63	0.86
2	6	0.12	1.2e+02	4.0	5.1	6	30	56	80	55	88	0.74
3	6	0.052	51	5.2	4.4	5	31	79	109	77	117	0.73
4	6	0.0006	0.59	11.4	4.9	5	38	111	144	107	145	0.80
5	6	0.013	13	7.2	4.7	9	38	143	172	139	178	0.79
6	6	0.002	2	9.7	5.4	8	38	170	200	165	207	0.81

Coding Sequence: ATGTACGCAGTACGCAGCGAATTGAGCCGCAGCCTGAAACAGAAAATAGACCGCTTTCTTAGCAAAGAACACTATGTCAATCACTATATGTGGCATACTGGTCAAACTCCACATCAATGTGAAGTATGTGGCAAAAAGTATACACGCAAAGAACATTTAGCAAATCATATGCGTTCGCACACAAATGACACACCGTTTCGTTGCGAAATTTGTGGTAAAAGCTTTAGTTGTAAGGAGCATTTTACTAATCATATATTATGGCATACAGGGGAAACCCCACATCGTTGTGATTTCTGTTCGAAAACGTTTACACGCCAGGAACATTTATTAAATCATGTTCGCCAACATACTGGAGAATCACCACATCGTTGTACATATTGTATGAAAACTTTTACGCGAAAAGAGCATTTAGTAAATCATATACGACAACATACTGGTGAGACACCCTTTAAGTGCACTTACTGTACCAAGGCTTTCACCCGAAAATATCATATGGTCAATCATGTACGCCAACATACAGGTGAATCTCCACATAAATGTACATACTGTGCGAAGACGTTTACGCGCAAAGAACACTTAACGAATCACGTACGTCAACATACCGGTGAATCGCctcatagtcgtgatagctacaatagagatatattgaatgcttag
Protein Sequence: MYAVRSELSRSLKQKIDRFLSKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSCKEHFTNHILWHTGETPHRCDFCSKTFTRQEHLLNHVRQHTGESPHRCTYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKYHMVNHVRQHTGESPHKCTYCAKTFTRKEHLTNHVRQHTGESPHSRDSYNRDILNA

Sequence clustering based on sequence similarity using MMseqs2