Basic Information

Insect: Linnaemya vulpina
Gene Symbol: CDH23
Assembly: GCA_963675445.1
Location: OY776278.1:15844097-15855303[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.9e-09 4.3e-06 27.6 0.0 4 41 16 53 14 56 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.9e-09	4.3e-06	27.6	0.0	4	41	16	53	14	56	0.92

Sequence Information

Coding Sequence: atgGCCACCAAAGGAAAAAGATCTTTTCATCAATATCCTGAGCAGGCACTACAAGACGCAATTAGTGAAATAAGGGGTGGTGGGATATCAGTATATGCCGCAAGCGTTAAATATGGTGTTCCACGTACCACTATTTACGATAGGATTAATGGTCGTGTTCCCGAAGGTCCTAGAAGAATGGGCCCAACAACAGTACTAACAAAAGCTGAGGAGGATTGTTTAGAAAAGTGGTGCCACGACATGGCAAAATGTGGTTTCCCACTTAAAACTGATGATTTACTCAACACGGTTCAAACAATCATAAAGAAAGAGAAACGAGCCACACCATTTGTAAATGATCGTCCTGGCAGAAAGTGGTTTTCCAGTTTTTTGAAACGGCACCCTAGTATTTCAATTAGAGAAGCCGAAGGGATTAGCAAAGGGCGGGCGATAATTACAGAAGAATGTATTAGAAAATGGTTTGCggaattgaaaagttttttaagcgAACGGAATGATTTAGCTATTTTAGAAGATCCGTCACGCATTTTTAATGGAGAtgaaacaagtttttgtttgtgcCCGAAAACTGGAGGAGTGCTAGCACCTAAAGGATTTCGCAatgtttattccatccagcgaGGCAATGAAAAAGAAACGGTTACTGTTTTATTAGTCTTTTCTGCAAACGGGAAGACTGTCGAACCAATGGTTGTATTTCCGTATGTGCGAATACCGAAAGACATTGTAAGCAGCCTTCCCGATAAATGGTTTCTTGGGAAGTCCGAGACAGGGTGGATGATATGCGAAACGTTTTACGAGTACATAGCAAACTGTTTTCACAATTGGCTTAGCGAGCACAATGTTCAACGGCCCGTATTGCTCTTTGTGGACGGACACAAATCACATATGACTATGGAATTAAGCCAATTTTGTGAAAACaatgaaatcattttgtatgcGCTACCACCCAATACAACGCATATAATGCAGCCGGCTGATGTAAGCGTTTTCAAACCATTAAAAACGGAGTGGAAAAAAACCGTTAgaaaatggcaaagcaaacCGGAAAACCACAACCAAACATTATCAAAATCTACTTTTTGTCCCCTTCTCCACATGGTTCTTTCTGAACTTGATATAGAAGAAACCATTAAAAACGGGTTCCGAAAATGTGGACTTTACCCATTTAATGCCGATAATGTGGATTACACTaaatgtgttaaaaatattttagaagaaCTAACAACTGAACGCAATGAAAGTGAAGAAGTTTTGACTGAAACAGATTTTGATAAGTGTGTGGCGATTATTAATATGATAAGTCCCAAATTGCTTGAGCGTGGAATTGATTCAAGTATAGTTATTGAGGAAATCCGTGCTATGAAAAATAGTGAGAACGTCCAAGACATTGACATTATATGCAACACGCCAGTTCAGTCTGGTATATACACACTTAATGAGGAAGGTGTTTTGGAGAGAGAAAATATTCAACCAAGATCACCAACTCCAGCTAATAAAAGCCATACTTTACTGCCGGACCATTGTTCAACGCCAACTTCACAACGTAAAGAAAAACCAAGAAGTTTATTCGAGGATATTGTTGACTGCCCCTCTCCTAGTTCATCGATATGCAGctcaattgtaaaaaattttttgcttaatcCTATTAGTTATTCGCCAACAgGTATTGATCCAGAAGGTAGTCGCCTCAAATACAGTATTTCTGGGCCAGTTTTTTCTGTTGATCGTGATACGGGTGTGGTGCGGCTACGTCAGGAGTTGGATCGTGAAATGCAAGATTCAATTGAGGTCATTATTAGTATTACAGACGAAGGAATTTATGCTACTGAGCCGAATACCGTGTCGTTAAGACGGGTAATTCCAGTACGCGATTTCAACGATAATCAGCCGAAATTTTTGGGTCGTCCCTACCTGGCCAGTGTTAGTGAGTCTTTGCCAGTGGGCTCATTACTAGAGGTCAAACCTGCAATTGTGGTAGTCGATAGAGATGAGGGCAGTAATGCTGAGATCCAGATAAGATGTGTGAAGGAAAACGACATTTGCGACACATTTAATGTAGAGGCCGAGCAAATATCTGAAGGCAACTATACGGCGCGCATAACACTAAAGAAGCCCTTGGACTTCGAAAGTAGACCCACATACATAATGAGCATTTCGGCTACAGATGGATCGTTTGAAAATCCTCTTACATCCCAGGCCACCGTATCGATCAGCATCATCGATGTGCAAGACCAATTGCCAGTTTTTACGAATGCTCCTTATTCGGCTACCGTAGATGAAAACACGCCTCCAGGTGTGAGTATTTTCACCATTAAGGCTGTAGATGGAGATGTAGGTATACCGCGCGATATCATGCTCACCCTAGAGAATGATGATTTTGGCCACTTTGATTTGATGCCCTTTGGAGATCCGAAAGAGGGTACTGCTGTTTTAATAACTTCAGAAAAGCCTTTGGATCGCGAGCATCctgaaattttgcaaaatggTGGCGTTTATATGTTTACAGTTCGGGCCACAGAATTAATAGATGGTGCTGTGCCATCCGATTCATCCACCACACaaataaccattttggtaaatGATGCTGACGATCATATACCCGAGTTTAATGGTGAAGAATTCAATATTTCTATACCGGAAAATCTGGACACTGGCATGCCTCTGCCGGGTTTAGCGGTATTTGTTTTTGATCGTGATATGGGTTACAATAGTCGTTATTCATTGGCTTTACGTGACGTTTACAATTCCATGGACACTTTTGCCGTAAGTCCTGCCGAAGCTCAAGGCCGTACCCCCATAGTGGTGAAGGTTTTGAATTCCTCTCATTTGGAATATGATGTCGATGATATCAGGATGCGCCAGTTTGCTTTCGATGTCTTGGCTTTGGTCAATGGCGTAGAGAAATCCAAGGTCCGCATAAATGTACATTTGACGGATGTCAATGATAATCCTCCCATATTTGATCACTCAAGCTATAGATTTTTGGCACCTGAGAACTTTACGGTGAATTCTCAAATCGGCATGGTAAAGGCCTCCGACAAGGATTCAGGGAGATTTGGCTCCATTACATATCGCCTAAAAGGGTTTGGAGCCGACTATTTCTATACAGATCCCTTGACAGGTGGTTTCTTTATCAAGAAATCCTTGGACTATGAGAAACAGAGCAGTTACAGTTTATCGATAGCGGCAGTAGATGGAGGAGGTCTTGAGGCTAATGCCCAAGTTTTTGTAGAAGTTTTGGATGTCAATGACAATTATCCCGTGTTTGAAAGTTCTGAATATTCCAGGACCATAAGAGAGGGCACCAATCATTTTGAACCCGAGTTTAAGGTCAGAGCTACAGATATTGATGGCCCGACACAGGGCGGTGGTAAAGTGCGTTACGCCATTGTTTCTGAAAATAGTATATCTGGCAACGTTTTCAGCATCCATGAATTGACAGGAGAAATAACTTTGCAAAAGGTGGCACGTTCGATGGATACCGAAAGGGGTGAATATGATTTGGTGATTTCTGCAACCGATTTCGGAATACCTCCTTTGGTCAATACCACTAAAGTTTCGATACGAGTGGGTATATCGGGTAATCAGAGGCCCATATTCAAGGgccattttcaaaatatagaaaatgtacCCATACTGGGTCCGCCCAGCTATAGAGTATCGATACCAGAGAATGCTCCAGCCGGTTACAATGTCACTACTGTCAAGGCCCATGATCCCGATGGCTTGGATAGTATGCTGCAGTATCGTATAGTGGGCGCTAAcgataattttgaaattgatgAAGAGTCTGGTGTCATTACCGTATCGTCTCAGGCCCGGATAGATCGTGACTCGAATATGGATAGTTTTGAAATAACCGTAAATGCTGTCGACTCAGGTCTACCCATACCAGAAACTGCCACTACTACCGTGTATGTGAACGTCAAGGATATTAATGATGAGAAACCAAAATTTGAGCAGCCCAGCTATGCCGCCTATTTGTCGGAGCGCACAGAAATCGGAGAAAATTTCTTGAAAGTGAGAGCCATTGATAAAGATCTGAACTCTAAACTGAACTACACAATCAAAGGCATACCCAGCGCTACCTCTAAAGCAGGAGTTGGTATAACAAAACGAAGTAAATATCGAGTAGAAGATGCTTTTCGTATTAACCCGGAAACGGGTGCAATTTATGTCAATGGAAAACTAGATCATGATGAAGCTGCGGTTATTGTTTTGTTGATAGAAGTCAAAGACCTTAATGCAGAGGTAGACCCTGAAGGACAAATTGATACCACCGAGGTCACGGTTTATGTGCAATCATTTAAAGAGACAAACCCTGTATTCACCAACAAAGGCTGGACTAGCTCTAGGCCAGtagtcaaaataaatataatggaGGAAATGCCTATAGAGAGCACACTGTTCATATTACAAGCCGAAGATCCTGTTTCAAAGTTGCCCATACAAAGTTTCGAATTGGTGGAGCCTTTGGAATTGGAATACTTTTATGTTCATGAGAGAACTGGTGAGGTAATTTTACGCAAACGTCTAGATTATGAAGCCCTAGAGGAAGGCAAGACACAGTACGAGTTCCAAGTTAAAGCCAATGCTCCCGATATGCAACGTAGTACCGTGACAAAAGTCAATGTGtctatagaaaatgttaatGACAATAGTCCCATGTTCGAGGAACTCTCTTATCATGCCACTCTggtagaaaacaaaaaacatcccGCGAAAATTATACGAGTCAAGGCTACGGATAAGGATGCCATTTTAACAGCACGTGATGAACGTTTGGGTTATCATAAAGTTTCTTATTCTTTATATGGCGAGAATGCTCATTTGTTTGAGATTAATAATGTAACAGGAGAAATAGTTGTGGCCCCGCACGCAATAATAGATCGTGAGCGCACTCCTCACATTTACTTACAAATCAAAGCTGAAGACTCTCCAGGCCGGCCGACAGACTCCAAGCAAAGTGTAGTTCAATTACTTATAGACGTTTTAGATGTAAACGATAATGCGCCGGCATTTAATCAAAGAGAATATACAGCTGTTATACCGGAAAATGTTGGGGCCGATGcttttgtaataaaactttttgctcACGACTTGGATGATGGTCCCGGGGGAGAAGTGACATACGAAATAATCGATGAGGGAGAAGTTAATGGAATGTTTAAGATCAACAAACAAACGGGTGAGATTAAAACGAAAAAACAGTTGACTGGCAAAGGTCGTTCGGAGCCATACGAGATTCGTGTGAGGGCTCATGATAATGGCGATCAATTAGCAAAACAGACTTCATTGAGCTCCGATGTCAAGGTAACCATATTCATAGGAGATGTCAGCACTAACGATGGTATACCATTTTTCATAGAGCCGGAGTTGGGTCAAACGGCCAATGTGACGGAGaactCTCCCGTTGGCACTCCAGTATTCCAGGTCAAAGCCAGTGATCCCGATAATCCAAATGCGCCATCTGGTACTCTATTCTATAAAATACTAGATGACACAACTGATGCCAAAGCTTTTGAGATCGATGAAACCACGGGCCTTATCAAAACTTCTGTTATACTCGATAGAGAATCGAAGGATATGTACAATATAATTCTGGAAGTTTCCGACAATGGCCAGCCCAAACAGTCCGTAACTAGAATTTTACAAATCAAAGTGCTGGATGTGGATGATCATAAGCCTCGTTTTAGCAGGGAAGTGGATGAAGCTCCCCTGGAATTTAAACTTTTAGAAGAGCAACCCGAGAGCTTTATTGTGGCTAATATTTCAGCCATAGATGAAGATATAGACGAAAATGCCGCCATTGAATATGTCATCACCGAGGGCAacgaagaaaatgtttttactgTAGAAAGAACTGACGATAATATGGCCGTTATTAAGACCACTGGGCCCATAGATCGAGAGCTGGTGGATAGTTATGCTCTCactataaaatgtttgaaattagGCGAACTCTCATATCCTTATCTGGGCGATCCTTACAACCGTCATGATTTCTCCCTGTTGCGTgttgttattcaaataattgatGTTGATGACAATTTGCCAGAGTTCGAATATCAGGACATGTCGGTGGGCATACGCATCAATGTGCCCATTGATAgtaaaattacaacaataaaagccATAGATGTGGATGCTGAGGCCGAGCCGATTATTTTAACTATAGAAAACGTTACGTTTGTGCCTCAATTCTACAAACGCACCAACAGCATAAAAACAACTCTATTGCAAAATCTTTTCACTTTGAACAACCGCACCGGAGAACTACGGACAGGTGGCTCCTTTGCCAACTACGTGGATGGCTATTTTAATATGAGGATACGAGCCAATAACAGCATGAAGCCCAAGAGACatgcttttaataatttaaaagtatttgttatacGTGACAAGTCGCTATTGAAGTTCGTATTTACTCGACCAGCCAGCGAGATTCAAACGAACATACGACCGTTCCAGGAAAAAGTAAAGGAAAAACTGAAACCTTTAGCTTTGGACTTGCATATACTGGATACTCAGGTGTTGACCAGACCCGATTACAGTTTAGATTTCACCTCGACTAGTTCTTGTTTTCAGATGTTCAAAAATGGCTCGGCCATATCGATTAACGAAATGCAAAAACTCATGAGTTCGGAATTTATGAAGAAGCAACTCTTCGATGTTTATGTCGAATATGGTGTGAGTGAAGTGGAGCCTTGTTCAATGCGTCGAGCAGTGGCGGCCGCTAGTTTTATGGCCTCGCCAGGTACCTGGTTGGTCATAATAGCCGGATTTATCGGTTTGGCGGCAATAATAACGGCATGTACGGCCTGCTGTTTAAAACGAAAGTACAAAAAACAGTCCAAACGAAGCCTGCAGGCGTCGCGTACCAGCACGGAAACCTATGGCGTTGTGGGTGTACCAACGGTGTACATGCCCTATTCAGAACCAATTTATGGACCATTGTAG
Protein Sequence: MATKGKRSFHQYPEQALQDAISEIRGGGISVYAASVKYGVPRTTIYDRINGRVPEGPRRMGPTTVLTKAEEDCLEKWCHDMAKCGFPLKTDDLLNTVQTIIKKEKRATPFVNDRPGRKWFSSFLKRHPSISIREAEGISKGRAIITEECIRKWFAELKSFLSERNDLAILEDPSRIFNGDETSFCLCPKTGGVLAPKGFRNVYSIQRGNEKETVTVLLVFSANGKTVEPMVVFPYVRIPKDIVSSLPDKWFLGKSETGWMICETFYEYIANCFHNWLSEHNVQRPVLLFVDGHKSHMTMELSQFCENNEIILYALPPNTTHIMQPADVSVFKPLKTEWKKTVRKWQSKPENHNQTLSKSTFCPLLHMVLSELDIEETIKNGFRKCGLYPFNADNVDYTKCVKNILEELTTERNESEEVLTETDFDKCVAIINMISPKLLERGIDSSIVIEEIRAMKNSENVQDIDIICNTPVQSGIYTLNEEGVLERENIQPRSPTPANKSHTLLPDHCSTPTSQRKEKPRSLFEDIVDCPSPSSSICSSIVKNFLLNPISYSPTGIDPEGSRLKYSISGPVFSVDRDTGVVRLRQELDREMQDSIEVIISITDEGIYATEPNTVSLRRVIPVRDFNDNQPKFLGRPYLASVSESLPVGSLLEVKPAIVVVDRDEGSNAEIQIRCVKENDICDTFNVEAEQISEGNYTARITLKKPLDFESRPTYIMSISATDGSFENPLTSQATVSISIIDVQDQLPVFTNAPYSATVDENTPPGVSIFTIKAVDGDVGIPRDIMLTLENDDFGHFDLMPFGDPKEGTAVLITSEKPLDREHPEILQNGGVYMFTVRATELIDGAVPSDSSTTQITILVNDADDHIPEFNGEEFNISIPENLDTGMPLPGLAVFVFDRDMGYNSRYSLALRDVYNSMDTFAVSPAEAQGRTPIVVKVLNSSHLEYDVDDIRMRQFAFDVLALVNGVEKSKVRINVHLTDVNDNPPIFDHSSYRFLAPENFTVNSQIGMVKASDKDSGRFGSITYRLKGFGADYFYTDPLTGGFFIKKSLDYEKQSSYSLSIAAVDGGGLEANAQVFVEVLDVNDNYPVFESSEYSRTIREGTNHFEPEFKVRATDIDGPTQGGGKVRYAIVSENSISGNVFSIHELTGEITLQKVARSMDTERGEYDLVISATDFGIPPLVNTTKVSIRVGISGNQRPIFKGHFQNIENVPILGPPSYRVSIPENAPAGYNVTTVKAHDPDGLDSMLQYRIVGANDNFEIDEESGVITVSSQARIDRDSNMDSFEITVNAVDSGLPIPETATTTVYVNVKDINDEKPKFEQPSYAAYLSERTEIGENFLKVRAIDKDLNSKLNYTIKGIPSATSKAGVGITKRSKYRVEDAFRINPETGAIYVNGKLDHDEAAVIVLLIEVKDLNAEVDPEGQIDTTEVTVYVQSFKETNPVFTNKGWTSSRPVVKINIMEEMPIESTLFILQAEDPVSKLPIQSFELVEPLELEYFYVHERTGEVILRKRLDYEALEEGKTQYEFQVKANAPDMQRSTVTKVNVSIENVNDNSPMFEELSYHATLVENKKHPAKIIRVKATDKDAILTARDERLGYHKVSYSLYGENAHLFEINNVTGEIVVAPHAIIDRERTPHIYLQIKAEDSPGRPTDSKQSVVQLLIDVLDVNDNAPAFNQREYTAVIPENVGADAFVIKLFAHDLDDGPGGEVTYEIIDEGEVNGMFKINKQTGEIKTKKQLTGKGRSEPYEIRVRAHDNGDQLAKQTSLSSDVKVTIFIGDVSTNDGIPFFIEPELGQTANVTENSPVGTPVFQVKASDPDNPNAPSGTLFYKILDDTTDAKAFEIDETTGLIKTSVILDRESKDMYNIILEVSDNGQPKQSVTRILQIKVLDVDDHKPRFSREVDEAPLEFKLLEEQPESFIVANISAIDEDIDENAAIEYVITEGNEENVFTVERTDDNMAVIKTTGPIDRELVDSYALTIKCLKLGELSYPYLGDPYNRHDFSLLRVVIQIIDVDDNLPEFEYQDMSVGIRINVPIDSKITTIKAIDVDAEAEPIILTIENVTFVPQFYKRTNSIKTTLLQNLFTLNNRTGELRTGGSFANYVDGYFNMRIRANNSMKPKRHAFNNLKVFVIRDKSLLKFVFTRPASEIQTNIRPFQEKVKEKLKPLALDLHILDTQVLTRPDYSLDFTSTSSCFQMFKNGSAISINEMQKLMSSEFMKKQLFDVYVEYGVSEVEPCSMRRAVAAASFMASPGTWLVIIAGFIGLAAIITACTACCLKRKYKKQSKRSLQASRTSTETYGVVGVPTVYMPYSEPIYGPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -