Lvul009437.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Linnaemya vulpina
Gene Symbol
-
Assembly
GCA_963675445.1
Location
OY776276.1:110614390-110616578[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.8e-10 1.1e-06 29.4 0.0 4 41 16 53 14 56 0.92

Sequence Information

Coding Sequence
atgGCCACCAAAGGAAAAAGATCTTTTCATCAATATCCTGAGCAGGCACTACAAGACGCAATTAGTGAAATAAGGGGTGGTGGGATATCAGTATATGCCGCAAGCGTTAAATATGGTGTTCCACGTACCACTATTTACGATAGGATTAATGGTCGTGTTCCCGAAGGTCCTAGAAGAATGGGCCCAACAACAGTACTAACAAAAGCTGAGGAGGATTGTTTAGAAAAGTGGTGCCACGACATGGCAAAATGTGGTTTCCCACTTAAAACTGATGATTTACTCAACACGGTTCAAACAATCATAAAGAAAGAGAAACGAGCCACACCATTTGTAAATGATCGTCCTGGCAGAAAGTGGTTTTCCAGTTTTTTGAAACGGCACCCTAGTATTTCAATTAGAGAAGCCGAAGGGATTAGCAAAGGGCGGGCGATAATTACAGAAGAATGTATTAGAAAATGGTTTGCggaattgaaaagttttttaagcgAACGGAATGATTTAGCTATTTTAGAAGATCCGTCACGCATTTTTAATGGAGAtgaaacaagtttttgtttgtgcCCGAAAACTGGAGGAGTGCTAGCACCTAAAGGATTTCGCAatgtttattccatccagcgaGGCAATGAAAAAGAAACGGTTACTGTTTTATTAGTCTTTTCTGCAAACGGGAAGACTGTCGAACCAATGGTTGTATTTCCGTATGTGCGAATACCGAAAGACATTGTAAGCAGCCTTCCCGATAAATGGTTTCTTGGGAAGTCCGAGACAGGGTGGATGATATGCGAAACGTTTTACGAGTACATAGCAAACTGTTTTCACAATTGGCTTAGCGAGCACAATGTTCAACGGCCCGTATTGCTCTTTGTGGACGGACACAAATCACATATGACTATGGAATTAAGCCAATTTTGTGAAAACaatgaaatcattttgtatgcGCTACCACCCAATACAACGCATATAATGCAGCCGGCTGATGTAAGCGTTTTCAAACCATTAAAAACGGAGTGGAAAAAAACCGTTAgaaaatggcaaagcaaacCGGAAAACCACAACCAAACATTATCAAAATCTACTTTTTGTCCCCTTCTCCACATGGTTCTTTCTGAACTTGATATAGAAGAAACCATTAAAAACGGGTTCCGAAAATGTGGACTTTACCCATTTAATGCCGATAATGTGGATTACACTaaatgtgttaaaaatattttagaagaaCTAACAACTGAACGCAATGAAAGTGAAGAAGTTTTGACTGAAACAGATTTTGATAAGTGTGTGGCGATTATTAATATGATAAGTCCCAAATTGCTTGAGCGTGGAATTGATTCAAGTATAGTTATTGAGGAAATCCGTGCTATGAAAAATAGTGAGAACGTCCAAGACATTGACATTATATGCAACACGCCAGTTCAGTCTGGTATATACACACTTAATGAGGAAGGTGTTTTGGAGAGAGAAAATATTCAACCAAGATCACCAACTCCAGCTAATAAAAGCCATACTTTACTGCCGGACCATTGTTCAACGCCAACTTCACAACGTAAAGAAAAACCAAGAAGTTTATTCGAGGATATTGTTGACTGCCCCTCTCCTAGTTCATCGATATGCAGctcaattgtaaaaaattttttgcttaatcCTATTAGTTATTCGCCAACAgGCTCAACAACTCTAGTAAAAAATCCTGAGGTTTCAATGTCTCCGTCCTTTGAAAAACACCTTTACTTTCCAAAACCGTTACCGTCACcacagcaaaaaacaaaaattaaagcgcCAAGTGCTATTTCCGCTTTTGCGTGGAGGGAGCATATACAGGCTAAAGAAAATGAGAAGATAATTAAAGCTGAAGCTATAAAAAAACGAAAGTTAGAGCGTCAAAacagaaaaacagaaaaagaaaacaaatccagaaaatttaaaaaaagaaaacataagcAAGTATGTAACACTTGCAATGAAGAACTAGATACAGATGCTGAAGACGAGGATTTAAAAAACGTAGGGTGTGATACCTGCCCTCAGTGGTATCATTTCAAATGTACTGGACTCAGAAATGTACAATATAATGATGTCTGTCAATTGGATTTTGTATGTAAAACATGCCAAGATCAAAATGCTTAA
Protein Sequence
MATKGKRSFHQYPEQALQDAISEIRGGGISVYAASVKYGVPRTTIYDRINGRVPEGPRRMGPTTVLTKAEEDCLEKWCHDMAKCGFPLKTDDLLNTVQTIIKKEKRATPFVNDRPGRKWFSSFLKRHPSISIREAEGISKGRAIITEECIRKWFAELKSFLSERNDLAILEDPSRIFNGDETSFCLCPKTGGVLAPKGFRNVYSIQRGNEKETVTVLLVFSANGKTVEPMVVFPYVRIPKDIVSSLPDKWFLGKSETGWMICETFYEYIANCFHNWLSEHNVQRPVLLFVDGHKSHMTMELSQFCENNEIILYALPPNTTHIMQPADVSVFKPLKTEWKKTVRKWQSKPENHNQTLSKSTFCPLLHMVLSELDIEETIKNGFRKCGLYPFNADNVDYTKCVKNILEELTTERNESEEVLTETDFDKCVAIINMISPKLLERGIDSSIVIEEIRAMKNSENVQDIDIICNTPVQSGIYTLNEEGVLERENIQPRSPTPANKSHTLLPDHCSTPTSQRKEKPRSLFEDIVDCPSPSSSICSSIVKNFLLNPISYSPTGSTTLVKNPEVSMSPSFEKHLYFPKPLPSPQQKTKIKAPSAISAFAWREHIQAKENEKIIKAEAIKKRKLERQNRKTEKENKSRKFKKRKHKQVCNTCNEELDTDAEDEDLKNVGCDTCPQWYHFKCTGLRNVQYNDVCQLDFVCKTCQDQNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01397351; iTF_00900511;
90% Identity
iTF_01397351;
80% Identity
iTF_00900511;