Basic Information

Insect: Linnaemya tessellans
Gene Symbol: -
Assembly: GCA_951800035.1
Location: OX637534.1:114961999-114966512[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.48 89 5.6 1.9 1 23 487 512 487 513 0.92

2 17 0.0065 1.2 11.5 1.9 2 19 524 541 523 543 0.94

3 17 1.6 2.9e+02 4.0 0.7 2 23 585 607 584 607 0.93

4 17 0.067 12 8.3 0.8 5 23 617 635 614 635 0.93

5 17 0.0012 0.22 13.8 0.6 3 23 644 665 642 665 0.96

6 17 0.0098 1.8 10.9 4.0 2 21 673 692 672 694 0.94

7 17 0.41 75 5.8 0.1 1 20 703 722 703 724 0.76

8 17 0.097 18 7.8 2.8 1 22 744 765 744 768 0.91

9 17 0.1 19 7.7 3.5 1 23 773 795 773 795 0.94

10 17 0.24 44 6.6 0.2 1 23 811 836 811 836 0.97

11 17 0.19 35 6.9 1.5 1 23 848 871 848 871 0.95

12 17 0.042 7.8 8.9 1.6 2 23 877 899 876 899 0.91

13 17 0.00043 0.079 15.2 1.1 2 23 903 925 902 925 0.94

14 17 2.4 4.5e+02 3.4 5.8 1 23 931 954 931 954 0.93

15 17 0.00021 0.039 16.2 0.4 1 23 959 981 959 981 0.98

16 17 1.6e-06 0.0003 22.8 1.6 1 23 987 1009 987 1009 0.99

17 17 0.016 3 10.2 0.2 1 23 1015 1044 1015 1044 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.48	89	5.6	1.9	1	23	487	512	487	513	0.92
2	17	0.0065	1.2	11.5	1.9	2	19	524	541	523	543	0.94
3	17	1.6	2.9e+02	4.0	0.7	2	23	585	607	584	607	0.93
4	17	0.067	12	8.3	0.8	5	23	617	635	614	635	0.93
5	17	0.0012	0.22	13.8	0.6	3	23	644	665	642	665	0.96
6	17	0.0098	1.8	10.9	4.0	2	21	673	692	672	694	0.94
7	17	0.41	75	5.8	0.1	1	20	703	722	703	724	0.76
8	17	0.097	18	7.8	2.8	1	22	744	765	744	768	0.91
9	17	0.1	19	7.7	3.5	1	23	773	795	773	795	0.94
10	17	0.24	44	6.6	0.2	1	23	811	836	811	836	0.97
11	17	0.19	35	6.9	1.5	1	23	848	871	848	871	0.95
12	17	0.042	7.8	8.9	1.6	2	23	877	899	876	899	0.91
13	17	0.00043	0.079	15.2	1.1	2	23	903	925	902	925	0.94
14	17	2.4	4.5e+02	3.4	5.8	1	23	931	954	931	954	0.93
15	17	0.00021	0.039	16.2	0.4	1	23	959	981	959	981	0.98
16	17	1.6e-06	0.0003	22.8	1.6	1	23	987	1009	987	1009	0.99
17	17	0.016	3	10.2	0.2	1	23	1015	1044	1015	1044	0.89

Sequence Information

Coding Sequence: aTGGCGGTTAATGTTTCCACACCTAGCAGTGTCTGTCTATATTGCAAAACAATCTCGATTGCAGATGATGAAAAGGAATTTCGCGAAATTTATGATGAAGTGGGCCTGGAGCTACAACTACCAACGTTAGTGGAgacattttttcatattaaagttATAAATGATGGAGGAAAAAATGTTCTGTGTGATGATTGCCTTAATCGGCTTATCGATTTGTATGACATGGCGGAGCATGCCAAAGAAGAAAAGATTAGGGCAGCAGGTGTGGGAAGTCCCAAAAGCGAAGCTGTGGTTACAAATAATCTGAGAAAAGAAGGTGCAGATGACTCTGCAAAGCAAGTAGTAATAAGGAAGGAAAGTATAAGTAAAGGACAGAGGGTTATAAGTACTAATGATGATGGTTCCCATATAAAGGAAAATGATCATGGTCATTCGACGCCAAATGACtccaaaattgttttacaaaatacaaGTAACATTGAATACAAATGTTTGAAAATGTTGCCCTTAAGTTCCAACTTAAATCTTCCAAAGACCAACCAAGAAAGTGATGACGAAAATATAGatgttatatatgaaaatatggaAGATGTAGTTGGTAACTACAAAGAAAAGCATGTGGAACATTATCCAGACGAAGAGTACGTATTTGTAAATAACAGTGATGACTCACAAGATGTAAATGAATCATCTTCAAACATCATAATAGAAGTTAGAAATCCAGAGGAACCTGAAAGCAATGAACAAATTGAGTATATTGAAGATTATGAAGTTCAAGGTATGGAAATAGAAGAAATGCTTAGCACGAATTCGTTAAGTGAGTCTGAAAAATTGGTACCAGTGATGCAAAACCTCACAAAAGCTATTGCGCGCAATAGCCAAAATGATTTGGAAGATGATAATTCGGTCGAGTTAAGTAGTGAGAATGTAATTGATGGTTCCCAAACTATAAATCAACAAGAAATTGATATGGAAAACATTTATATAGAGGAGTCCGAGGATATTTATTATGAGGAAGACTCACAGATGAATGAAGAAACTGATTGCATAAACGAAATACGCACTAGGGCAGAAAAAAATAACAGTGAGACTAATTCAtcggaaatattaaaaaataacctGCAGACGGCTACTGCATCGAGCAATTGCAATGAAaatgaaactaaattttataatgTGGAAAATATTAACACTGGAGAAATTATTACAGCAGACCAACTAGAGGACTATGATGATGAATTTTGTTTAGAAGAGGAATATTTAATTGAAGaaataacatGTTCCGAGGATTATGATAAAGTTGATTTACACGATTACTTGGACAAAGTTTTAGTAACAAAATTTCATGATTTACAGCTAAAATGGGAAAAGGAGTGTAAACTATGTCTCCATATGCACAATACCTTTGAAGAGCTATTAAGTCATCCGTGCATACTTGATTTCGAGGAGGAGGATCTGTTCTGTTGCACAATTAAAGATTGTGATGAGACCTTAAACAGCCTAAATGCATTTGCAAGACATTTAATACTGACACATCATGATAATTTAGAAAGTGTATCAATTTATGGTAAATGTCCAGATTgccaaaaaacattttcaaatatattagaCTTTAATAAACATTCTTGCTGTCGCAATATAAAAAGGAAATCTGGGCTGCCAAATTATTGTCAATACTGCGATATGGATTTCCAAtctttaaaaagATACGTTTTTCACATGCAATTTCATTTAACAAGTCGCCGGCCAAAGGTGTGCTTATTGTGCggtgatttatttaaaaattccaatGATTTCTTTGAGCATACTCAATATCAACATATACCTGAAAATTCTATGGCTTGCATAAAATGTGATCGCTTCTTTAAGAAAAAGGAAGTGTATCAAAACCATATGGAATTGCATGAGGACTCTAAATATCAATATGGTTGCACTCTTTGTCCCAAGAAGTATACTAATAAATTTGGTTTGAATCAACATGTGgaCACTTATCACAATAACAAATCTAATGCTTTACGGTGtagttattgtgaaaaagaattcgTGAATAAATTATCATATCGAAATCACATGAAATGTCATGGAACTGATGTGCAAGTGGAATCGTTTATTTGCTCTACGTGTGGCATTATAAGTAATAACTCGGAATTTATTAAGCACCATATTGAATCAGATGAAGATTCGCCGTGTTTCTCAACGTCTATAGAAGAAGCCACTTTAGGTTTTGGTTATACATGTGAAAATTGTTCTTTCGATTTCCATACAATTCAGCATCTTAAAGCACATCGTTTAAGCGATATTCATAGCGATGAACTGTTCTATTGTGGTATATGTCGACAAAGCTTTAAAAGTCTACTGCACATGAGAAATCATTCTACGAATCACAAGGATTTTAAGGAATGGCAAGAGTCATTTCCAATAACACGTTTTTTTGTTTGCAACATAGGCgATTGTCAAGAGTTCTATCCAATATGGACTACATTATATTACCATAAAAGACGTCCACATAAAACAGCAGAAGCTTCAACTTCACCTAAAAAGTTCGAATGCCAGTTTTGCCAACAATTGTGTACATCAAAAATGTCGTTGGCTGTCCACGTAGCTAGAAGCCATAATAATTcaaatATTAAATGTTCTTACTGCAAGCGAGGCTTAAAATCCCAACAGCTTTTGCAAGAGCATGTTGATCATTATCATACAAAAGTTGAATGTGACTTATGCTTTAAGAAGTTCAAAAATCGTCGAAATTTAGAATCGCACAATAACATGGTGCATCTTAATATTAAgcgatatttttgtaaacattgCGAGAAAGGATATTTTCATAAAAGTGAAAAGGATCTCCACGAAAAGAAgGTTCACCCTAAGGTTGCCTTCAAATGTGAAATATGCAATTTTACAACTAACTATCCGGAATCTTTGGAAATTCATATGGACAAACATAATAACAAGTTAAAATTTCAGTGTACAATATGTGGCAAAGAGTTTGGTCGCAAACAACTTCTCAAAAGCCACTTAAAAAGGCATCTTGATAAAAAAGACTATCAATGtgataattatttaaaagaaaagggTTGCGATGCAACTTTTGTTTCGGGCGCTCTATTGAAAAGACATATTCAAAATACACATCTCAATTCAAGCTATAACTTTAATATGGAAACCGGCGGCCAGAGTAATATTAAAACTACTAAGAAATGTTCCGAAAccgatttaataaataatatttcatatgaaatattagaaATCGACGATGACAGTATGACCGAAAAGAGCCATTTAAATGATACGGAATTTGAACGAAATGCTATTGAATTGGTATTGGAAAATGATGTCGAGTTTGGTGAGCAGTAA
Protein Sequence: MAVNVSTPSSVCLYCKTISIADDEKEFREIYDEVGLELQLPTLVETFFHIKVINDGGKNVLCDDCLNRLIDLYDMAEHAKEEKIRAAGVGSPKSEAVVTNNLRKEGADDSAKQVVIRKESISKGQRVISTNDDGSHIKENDHGHSTPNDSKIVLQNTSNIEYKCLKMLPLSSNLNLPKTNQESDDENIDVIYENMEDVVGNYKEKHVEHYPDEEYVFVNNSDDSQDVNESSSNIIIEVRNPEEPESNEQIEYIEDYEVQGMEIEEMLSTNSLSESEKLVPVMQNLTKAIARNSQNDLEDDNSVELSSENVIDGSQTINQQEIDMENIYIEESEDIYYEEDSQMNEETDCINEIRTRAEKNNSETNSSEILKNNLQTATASSNCNENETKFYNVENINTGEIITADQLEDYDDEFCLEEEYLIEEITCSEDYDKVDLHDYLDKVLVTKFHDLQLKWEKECKLCLHMHNTFEELLSHPCILDFEEEDLFCCTIKDCDETLNSLNAFARHLILTHHDNLESVSIYGKCPDCQKTFSNILDFNKHSCCRNIKRKSGLPNYCQYCDMDFQSLKRYVFHMQFHLTSRRPKVCLLCGDLFKNSNDFFEHTQYQHIPENSMACIKCDRFFKKKEVYQNHMELHEDSKYQYGCTLCPKKYTNKFGLNQHVDTYHNNKSNALRCSYCEKEFVNKLSYRNHMKCHGTDVQVESFICSTCGIISNNSEFIKHHIESDEDSPCFSTSIEEATLGFGYTCENCSFDFHTIQHLKAHRLSDIHSDELFYCGICRQSFKSLLHMRNHSTNHKDFKEWQESFPITRFFVCNIGDCQEFYPIWTTLYYHKRRPHKTAEASTSPKKFECQFCQQLCTSKMSLAVHVARSHNNSNIKCSYCKRGLKSQQLLQEHVDHYHTKVECDLCFKKFKNRRNLESHNNMVHLNIKRYFCKHCEKGYFHKSEKDLHEKKVHPKVAFKCEICNFTTNYPESLEIHMDKHNNKLKFQCTICGKEFGRKQLLKSHLKRHLDKKDYQCDNYLKEKGCDATFVSGALLKRHIQNTHLNSSYNFNMETGGQSNIKTTKKCSETDLINNISYEILEIDDDSMTEKSHLNDTEFERNAIELVLENDVEFGEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -