Ltes037140.1
Basic Information
- Insect
- Linnaemya tessellans
- Gene Symbol
- grau_2
- Assembly
- GCA_951800035.1
- Location
- OX637534.1:95826553-95829228[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.3 1.2e+03 2.1 0.2 2 23 228 250 227 250 0.89 2 10 5.9 1.1e+03 2.2 0.3 6 23 259 276 259 276 0.96 3 10 0.0013 0.24 13.7 3.9 1 23 282 305 282 305 0.96 4 10 0.00013 0.024 16.8 0.4 3 23 312 332 311 332 0.96 5 10 0.00031 0.057 15.7 0.1 2 23 341 363 340 363 0.95 6 10 3.6e-05 0.0066 18.6 0.4 3 23 370 390 368 390 0.96 7 10 0.00014 0.027 16.7 0.8 3 23 400 421 398 421 0.96 8 10 1.2e-06 0.00022 23.2 0.6 1 23 430 453 430 453 0.96 9 10 1.7e-05 0.0032 19.6 0.5 2 23 460 481 460 481 0.97 10 10 0.00057 0.11 14.8 0.7 3 23 489 510 488 510 0.96
Sequence Information
- Coding Sequence
- ATGCCGAATTGTTTATTGTgttttgaatttgaaataaataaaaatgatctaAATTCGATTACTTTTAATTCAACCGAATGGCAGGAGTTAAATATAGAACATATCATTCAAAAACATCTTTGGAAAGTGgaaaatttaaacaaacaatcGTACATATGCCGAGCATGTTGGCAggaattatataattttcataatttctaCGTAAAACTCGAAAAAGTCCACGCAAATTTAAGTAtgttaataaaatcagaaacaGTTTCGGACGATGTTTCAAGCTGCAAAGGAGACTTACCTGAACAACTTTTTATTGTacctgaaattttatttttaaacgacACAAATCCTTTAGAAATTTGTGAAGAAAAATGTGTGGAGGAAGTaactactttaaaaaatacTGTTGAACGTAAACGCCCATTAAGGAAAAGTATAAATGATAAGCAGAAACATGCGAAAAAGTATTCGAAATTTGATACTGAAAAAAATAtcatagaaataaacaaattggaAGACGATGAAAATCGGCACGAAGTTGGCATAAAATTGAAAGCAGTGGAAAATAACGATCGGAATGATAGTTTTGAAAGTGATGATGACCATTCCTTAAATACTACCGATTTATCGAGTTTAGACCAACTGCGGCAAAAACGGGACAAATTCATAGccgaaaatttccaaataacttGTTCGCTTTGTCAAATTTCTCTGGCGACGTTTTCCATAATGACTACACACTACAAAGAGGAACATAATCAACGTGGTTATGTTACATGTTGTCATCAAAAGCTTTACTCTCGATCAGAAATAGTTGATCATATTAAAATACACCAAAATccagaatattttaaatgtagATACTGTGGCAAAACATCAATTAGTCGTACATGCCTGAAGATGCACGTTAAAAATGTTCATGAAAATAAGACTGCGGATTGTGACATATGTGGTAAAAGTTTATCAACAGAAGTAACTCTAAAACGGCATAAATTACTACATGATgctaaaaatactgaaaaaattCCCTGCCAACAATGTGATAAGtcCTACATCTCTAAATTATCCTTAGATAATCATATACGACTTGTTCACTCAAGAAAACCTATAATTTGCGATCTGTGCGGTAAATCTGTAAAGGACAGTTATACATTCAAACTTCATATGTTAAAGCATGAAGGAATAGCGAAACCAGCGGTAAATTGTGAAGTTTGTGGACGAATTTTATCCGATATGGGATGTTTGAAGCGTCACATGCGCTCATATCATCCTCCGAATGGAGTTAAATCTAAATTTGATTGTCCCGTGTGtacgaaaatatttacaagcaCTTCTAATCTTAAATCCCACATAAAAAATGTACACGAAAACAAGTACGAACGAAAGTGTACACTGTGtgagaaaacatttaaaaaacctGCCGCCTTAAaggatCACATGGCTTATCATACCGGAAAACCTTTACGGGCTTGTGGTTTCTGTCctaaaacattttattcaaaTGGTAATATGTATACTCATCGCAAGAAGGCGCATCCAATAGAGTGGCAGGAATCtataagagaaaaattttcCGGAAAGAAAAGTATTGTACAACAACAATAG
- Protein Sequence
- MPNCLLCFEFEINKNDLNSITFNSTEWQELNIEHIIQKHLWKVENLNKQSYICRACWQELYNFHNFYVKLEKVHANLSMLIKSETVSDDVSSCKGDLPEQLFIVPEILFLNDTNPLEICEEKCVEEVTTLKNTVERKRPLRKSINDKQKHAKKYSKFDTEKNIIEINKLEDDENRHEVGIKLKAVENNDRNDSFESDDDHSLNTTDLSSLDQLRQKRDKFIAENFQITCSLCQISLATFSIMTTHYKEEHNQRGYVTCCHQKLYSRSEIVDHIKIHQNPEYFKCRYCGKTSISRTCLKMHVKNVHENKTADCDICGKSLSTEVTLKRHKLLHDAKNTEKIPCQQCDKSYISKLSLDNHIRLVHSRKPIICDLCGKSVKDSYTFKLHMLKHEGIAKPAVNCEVCGRILSDMGCLKRHMRSYHPPNGVKSKFDCPVCTKIFTSTSNLKSHIKNVHENKYERKCTLCEKTFKKPAALKDHMAYHTGKPLRACGFCPKTFYSNGNMYTHRKKAHPIEWQESIREKFSGKKSIVQQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00900893;
- 90% Identity
- -
- 80% Identity
- -