Basic Information

Insect: Linnaemya tessellans
Gene Symbol: -
Assembly: GCA_951800035.1
Location: OX637536.1:2529791-2544001[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.0048 0.88 11.9 1.0 3 23 240 261 238 261 0.94

2 19 0.00033 0.061 15.6 0.1 2 23 271 293 270 293 0.97

3 19 0.00048 0.089 15.1 3.8 1 23 299 321 299 321 0.98

4 19 0.00016 0.03 16.5 0.7 1 23 327 349 327 349 0.95

5 19 0.029 5.3 9.5 0.3 3 23 357 377 356 377 0.98

6 19 0.0017 0.32 13.3 0.2 2 23 383 405 382 405 0.94

7 19 0.0083 1.5 11.2 3.1 1 23 411 433 411 434 0.96

8 19 0.017 3.2 10.2 5.2 2 23 573 594 572 594 0.95

9 19 3.3 6.1e+02 3.0 0.6 1 23 671 694 671 694 0.89

10 19 0.0091 1.7 11.0 2.6 1 23 701 723 701 723 0.99

11 19 5 9.3e+02 2.4 0.3 1 19 731 749 731 752 0.91

12 19 0.024 4.5 9.7 1.5 3 23 857 878 855 878 0.96

13 19 0.00051 0.094 15.0 0.1 1 23 884 906 884 906 0.98

14 19 0.066 12 8.3 7.4 1 23 912 934 912 934 0.95

15 19 0.0056 1 11.7 0.7 3 23 941 961 940 961 0.99

16 19 2.6e-06 0.00047 22.2 3.5 1 23 967 989 967 989 0.99

17 19 8.9e-07 0.00017 23.6 1.6 1 23 995 1017 995 1017 0.99

18 19 0.0053 0.98 11.8 2.9 1 21 1023 1043 1023 1045 0.95

19 19 0.11 20 7.6 0.9 1 21 1051 1071 1051 1075 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.0048	0.88	11.9	1.0	3	23	240	261	238	261	0.94
2	19	0.00033	0.061	15.6	0.1	2	23	271	293	270	293	0.97
3	19	0.00048	0.089	15.1	3.8	1	23	299	321	299	321	0.98
4	19	0.00016	0.03	16.5	0.7	1	23	327	349	327	349	0.95
5	19	0.029	5.3	9.5	0.3	3	23	357	377	356	377	0.98
6	19	0.0017	0.32	13.3	0.2	2	23	383	405	382	405	0.94
7	19	0.0083	1.5	11.2	3.1	1	23	411	433	411	434	0.96
8	19	0.017	3.2	10.2	5.2	2	23	573	594	572	594	0.95
9	19	3.3	6.1e+02	3.0	0.6	1	23	671	694	671	694	0.89
10	19	0.0091	1.7	11.0	2.6	1	23	701	723	701	723	0.99
11	19	5	9.3e+02	2.4	0.3	1	19	731	749	731	752	0.91
12	19	0.024	4.5	9.7	1.5	3	23	857	878	855	878	0.96
13	19	0.00051	0.094	15.0	0.1	1	23	884	906	884	906	0.98
14	19	0.066	12	8.3	7.4	1	23	912	934	912	934	0.95
15	19	0.0056	1	11.7	0.7	3	23	941	961	940	961	0.99
16	19	2.6e-06	0.00047	22.2	3.5	1	23	967	989	967	989	0.99
17	19	8.9e-07	0.00017	23.6	1.6	1	23	995	1017	995	1017	0.99
18	19	0.0053	0.98	11.8	2.9	1	21	1023	1043	1023	1045	0.95
19	19	0.11	20	7.6	0.9	1	21	1051	1071	1051	1075	0.91

Sequence Information

Coding Sequence: ATGACAAGTTTTATTAATCATGACTGTTTTATAAATGGAGTTCAGTACAAATGTCGTACTTGCTTTGATCCTGGTCGAATTATCCACTCGCTAGCAGAAGAAGCCAGTACCACAAAAACTTGGCATCAAGTGCTAGAAGATATTGCTCAGTTACAGACAAAGGATGATGAATTACTGCCAAAGACTTTGTGCTGCGATTGTTTAGATAAACTTAAACGATCTTACGAATTTATACTGCAAGTCCAgactgtaaataaaaaatactctgAATTATTGATAAAAGAAGGAGGTTCAAATGAAGTCGATAATTCAACCGATTGCTTGGCAGAGTCTACTATTGCTCTGCCATTGGATATTAAGTTGGAAGAAGAAATGGTTGTTTCATATGACATTAATATGAGTAACAATTTAGAAGAAGGCGATgagacaaattttgaaaatcaagATTATGATGATCCCTTTAACGAAACAATTGATGAAGACTACAAGGAAGAGAACGAAAGtgcaaAAGCAAAATCTGGAAAAAGTGCAACAAAACGAAATCGTGCCAAAAAAGGCAAGCAATCCGATGATAGCGAAGAAGTATTTCGTAAACCAGTTAAGCGATCAAAAAAAGTAAAGCAACCAAAGAAAACTGTGAAAACATCGCATACTGATGAATCGAGtgaaacacaaaatattaatgaagATGATGAGGATGTAAAAGAAACAATTATTTGCGACAAGTGTTCACAAACATTTGCATCTATTCACACATATCAAAGACACCAACAGGCTGAACATTCTTCAGAATCAAatgatgaaaaaaataaatgtccCATATGTTCGAAAGAATTTAGAAACAGTTGGTACGTAGTGGACCATATAAAAGTCGTTCACGATAAACTGAAGCCCTATAAATGTTCCCACTGTCCCAAAAGTTTTGCATCAGCCCATTCCAAACGAATTCATGAGCTTACGCACACGGATAGTTTTCCCTATGCTTGCGAATACTGTGACAGGCGTTTTCGGCTATCCAGCAAGCTAAAGATTCATTCAGAAATACATACAACTAAACCCGAACTCTTGTGTCCCATATGCAAACGAAGTCAAAAATCGCAAGAAGAACTAGAACTGCATGTGAAAAATCATGATGATAATCGTTTGCAATGTCCTTCGTGCGGCAACCTATTTAGAAGGAATGCCCAACTTAAAGATCATTATAATGCAGTTCACTTAAAATTGCGTCCTTATAAATGTGAATTTTGTGAATTGGGTTTTGGGGATCGGAAGACGCGTCGAGTACATCAGAGAACACATCATAAGCAGGAACTATCAATATCctCCCCATCATCAAACGAAGCCGAAGGCGAAATTGATTGCAGctccTCGTCGAAAAAAAACATCAACGTAGAATTTCCTTCTAGCAAATCAGTAAAACAGCTTACAAGAGGTCAACCATGTCCACAGGACGACGTAATCGAAAAAATCAACGATAATTGCTTTCTTTGCctcttatgcaaaaaaacatTAACTTTACTAAGAAATTGTCGCCGTCATGTAGCTACTCTGCACTATCAAGTCGTCAAAACTCCTTCAAAGAAAATTggtgtcaaaaaatatttacaccagACACCTAAAGATGGAATAGATGTAGAGCATGTAATCAATACCAACGATAGCAATTTATTATTTGGAGAACGCCTATACAGTAAACCAACTGGTTGGCGTGTGGTAGAATGTAAATTGTGCagtataacatttaaaacatgtAAAACACTTCGACAGCACTTGGAACATCACACGGATATAGACACTCTTCATAACTTAAAGTTATCGGATAATGTTGTGCAGCACTTATTTCCAAATATGAAcgatttaaatttaatcaagGAAAATATATGTAAAGATATTCGTAACAAACACTGGTTCAAATACTATACAGTGGTGAACGAACACTTTTATGAAATGTCCGTCAGTGACACCGAAGTAGAGGAGTTGGCGGAAGAACATGCAGAGCGATCGAATAAATATAAATGTGCATTCTGTGCTACAGAGTTTGCATATAAGTACCAGGTTTATCCACATTTAAAACAGGCTCACAGTAAGAGagaaatacctttcaaatgTACCCGATGTAAATTGGAATTTGTGTCCATTAAAATGTACAAACAACACTTGCAGACCCACTGTAATAACAAAGACAAAAGTTTCCCTTGTGGAAATTGTCCGGGAAAATTCACTTGGGTCGAAAATCTAAAGAATCACAATTGTATCAAAGGAATTACATCGACCACACCCGCCAATTTCGAAGATCAGCATAAAGACGTACAGaatgacATCACAAGAGATCCTTCAGATTCCGCCAGCGTTTCTTCCACTGCCATTGCCGATgggattaataaaaaaaatttccaagatGTACATTTTTCAGGGACAGATTTAGACAAAACACCAGCTCCTTCTATTGAGGCTATGCAAGATATTAATATCTTTGAAAGTATTAGTGATTTAGATTCGGCATTGGAAAGCATTTCCAAATTAACTGATTGCAAACAGCCTACACAAGAAGCAGAAGGAAAGCTTGCTTGTTCCTTTTGCAGTGTGTCATTTTCCGACAACTTAAAACTAAGTGCACACACGATGACATGCCATGTAAATGAAACAACTTTCAAGTGTGGCGTGTGCGAAAAGGAATTTGTAGGAGCAACTGATCTGGAGTCTCACCGTCTGATACACCCGGCCGAAAATCCTTTTAAATGTATGTTTTGTGAAAAATCATTTGAGCATCGAACACAATTTCTACGTCACAAACATGCGCATACAAGAGAAAAAACGCTATGTCCTGTTTGTGGAATCCACTTGTCTAAAAACTCAAGTTTCTCAGAACATTTGCTGACGCACACGGATGACAAACCTTACAAATGTGAATTTTGCGACAAGAGTTTTATACGCAAATCATATATGCTAAACCACCGTCGCACACACACTGCTGAACGTCCCTTTAAATGTCCACACTGCGAGAAAGCTTTTCCTAGACGAGAAAGATTAAGAAATCATATTCGAATACACACCGGAGAACGCCCTTATCAGTGCACGTATTGTAATAAAGCATTTATTATATCGGAACGTTTAAAGTTACATTTGCGTTGTCATACTGGCGAAAAGCCCTTCCGGTGTGAAGTTTGTGGCCAAGCTTATGCATGTCGCCCGTATCTCAAAAAACATCGTATCGCAAAAGGTCATTTCATTGAAAATGAGTAA
Protein Sequence: MTSFINHDCFINGVQYKCRTCFDPGRIIHSLAEEASTTKTWHQVLEDIAQLQTKDDELLPKTLCCDCLDKLKRSYEFILQVQTVNKKYSELLIKEGGSNEVDNSTDCLAESTIALPLDIKLEEEMVVSYDINMSNNLEEGDETNFENQDYDDPFNETIDEDYKEENESAKAKSGKSATKRNRAKKGKQSDDSEEVFRKPVKRSKKVKQPKKTVKTSHTDESSETQNINEDDEDVKETIICDKCSQTFASIHTYQRHQQAEHSSESNDEKNKCPICSKEFRNSWYVVDHIKVVHDKLKPYKCSHCPKSFASAHSKRIHELTHTDSFPYACEYCDRRFRLSSKLKIHSEIHTTKPELLCPICKRSQKSQEELELHVKNHDDNRLQCPSCGNLFRRNAQLKDHYNAVHLKLRPYKCEFCELGFGDRKTRRVHQRTHHKQELSISSPSSNEAEGEIDCSSSSKKNINVEFPSSKSVKQLTRGQPCPQDDVIEKINDNCFLCLLCKKTLTLLRNCRRHVATLHYQVVKTPSKKIGVKKYLHQTPKDGIDVEHVINTNDSNLLFGERLYSKPTGWRVVECKLCSITFKTCKTLRQHLEHHTDIDTLHNLKLSDNVVQHLFPNMNDLNLIKENICKDIRNKHWFKYYTVVNEHFYEMSVSDTEVEELAEEHAERSNKYKCAFCATEFAYKYQVYPHLKQAHSKREIPFKCTRCKLEFVSIKMYKQHLQTHCNNKDKSFPCGNCPGKFTWVENLKNHNCIKGITSTTPANFEDQHKDVQNDITRDPSDSASVSSTAIADGINKKNFQDVHFSGTDLDKTPAPSIEAMQDINIFESISDLDSALESISKLTDCKQPTQEAEGKLACSFCSVSFSDNLKLSAHTMTCHVNETTFKCGVCEKEFVGATDLESHRLIHPAENPFKCMFCEKSFEHRTQFLRHKHAHTREKTLCPVCGIHLSKNSSFSEHLLTHTDDKPYKCEFCDKSFIRKSYMLNHRRTHTAERPFKCPHCEKAFPRRERLRNHIRIHTGERPYQCTYCNKAFIISERLKLHLRCHTGEKPFRCEVCGQAYACRPYLKKHRIAKGHFIENE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -