Basic Information

Insect: Linnaemya tessellans
Gene Symbol: -
Assembly: GCA_951800035.1
Location: OX637534.1:20455069-20457740[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.5 8.3e+02 2.5 0.3 1 13 103 115 103 119 0.84

2 12 0.22 41 6.7 0.4 1 19 200 218 200 218 0.89

3 12 0.00028 0.051 15.8 3.0 1 23 246 268 246 268 0.98

4 12 1.4e-05 0.0025 19.9 0.3 2 23 287 308 287 308 0.97

5 12 0.00058 0.11 14.8 1.1 1 23 334 355 334 355 0.96

6 12 0.00034 0.063 15.5 2.2 1 23 361 383 361 383 0.98

7 12 0.00043 0.079 15.2 1.3 1 23 421 443 421 443 0.96

8 12 9.4e-08 1.7e-05 26.7 0.7 1 23 449 471 449 471 0.99

9 12 0.00012 0.022 17.0 3.5 1 23 477 499 477 499 0.99

10 12 9.9e-07 0.00018 23.5 0.6 1 23 505 527 505 527 0.98

11 12 1.7e-05 0.0031 19.6 0.3 1 23 531 553 531 553 0.98

12 12 0.0023 0.43 12.9 0.1 2 23 566 588 566 588 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.5	8.3e+02	2.5	0.3	1	13	103	115	103	119	0.84
2	12	0.22	41	6.7	0.4	1	19	200	218	200	218	0.89
3	12	0.00028	0.051	15.8	3.0	1	23	246	268	246	268	0.98
4	12	1.4e-05	0.0025	19.9	0.3	2	23	287	308	287	308	0.97
5	12	0.00058	0.11	14.8	1.1	1	23	334	355	334	355	0.96
6	12	0.00034	0.063	15.5	2.2	1	23	361	383	361	383	0.98
7	12	0.00043	0.079	15.2	1.3	1	23	421	443	421	443	0.96
8	12	9.4e-08	1.7e-05	26.7	0.7	1	23	449	471	449	471	0.99
9	12	0.00012	0.022	17.0	3.5	1	23	477	499	477	499	0.99
10	12	9.9e-07	0.00018	23.5	0.6	1	23	505	527	505	527	0.98
11	12	1.7e-05	0.0031	19.6	0.3	1	23	531	553	531	553	0.98
12	12	0.0023	0.43	12.9	0.1	2	23	566	588	566	588	0.95

Sequence Information

Coding Sequence: ATGGCAGAAGAAACGATCGATCTAATAGAAGAAACTAACGACGAAATAGAAAATTGgatttattataataatgatATTAAAGCACAAGAAAGTACAGATGTCAACTCTTTTAATGAAGATTCTAATCAACAATTAATGTGTATAGGTTCTGCCAATACAGTAGTTAacgaagaaaataaatttcaatatgctGATGGTGatgtaaatgaaaatgatgAAGAATTCCAAGATAATGGTAATGATACATCGGAGCATCACTTGatactaaaagaaattattgatGAAAATGGCCACCTGGTGGAGGAGTATTTTTGCCAACGATGCAATATGTCTTATAGTAGTATCGAAGAATTTCTTGGTTATCATCCGCTTCTCGAATTGCTGAATGAAAATCCTGAAGATAATGAGGAACCGCAACATGAGGAGCTGCCCACTGGCACAGAAAACAAATTGTGGGACTTAGTAGAAAATTTGGATGACTCGCAAGATGTTGTTgaagaagaaaattatatagaaaTGAAGCCAAATATCGCACATGATGGTTCTTTTATGGAAAAAGAAGCATCCAACAATACAGTTGAACCGGAAATGGAGCACTATTTTTGTTATGATTGCCAACAAGTATTTACGGATTTAACAACAGCAGAAAATCATGATTGTAACGAACAATTGGAGGATTGTAGTGACTTTTCAAAGtcaAATACAACTTTAGATACAGATAATGATAATAATGTGTACAGGTGTCAATTATGTGACAAAGACTATACATCGTTCCGATCTTTTACAAACCATCAACGTTGGCACAAAAAATCAGAAAGTCTGTTGGGTCACACCAAGACATTGCATGATGAACCTGCTGTTTGCGAAATATGTAATACAATATTTGCATCAGAGAAGAATTTAAAGTTGCACATGAAAATGCATAAGAAACATACACTTAAAACCATACAAGAAGCATTACCAGTTGGGGCTCAAAACGAATACAAGGacttaaaccaatttttttgtgaaatttgcaataaaagTTTTGATCAAAAGCTCTTGGTAATCCACAAAAATATGCATCAACATTTGGAAGAATATAGTTGTAGCAAATGCAACAAACAGTTTGAAAATTTACCCAGCtacgaaatacacatgcatatgcatgAAGATAATGTTAAAAAGCTTACTGCTATTAAAAACCCGAACACAGCAAATACTGCTGAAGATGCACCCTCAACATCATCTCAAAGACTTACTCATGGTGGTAAGCGCAAACATGCTTGTCAATATTGCGGTAAAGAGTTTCAACGTCCCTATGAGAAGGTCAAACATGAACGCATTCACACAGGAGAAAAACCATACGAATGCGAAGTATGCGGCAAGACATTTAGAGTTTCTTATTCGTTGACATTGCATTTAAGAACGCATACTGATATACGACCTTACGTATGTGCCACTTGTAACAAGCGCTTCAAGCAACAATCGGTTTATGTGCATCATCTGAAAACTCATGTCGTTGAGTGTGCATATAAGTGTGATATATGTGGCAAAAGCTTTCGCACTTCTGTCCAATTGAGTGggcataaaaatattcatactaAACCGTATAATTGTACTGAATGTAATCGACCGTTTGCCTCTTTGTATGCTGTCAAAATCCATATGAAAACTCACAATAAGTGTCATAAGTCGAATAAAAATCTCAAAAATCGTTGTAGCATTTGCGGTGCTTCTTATGCTCGTctatttgcgctaagtttgcATATTAAAGAACAACATGGCATTAATGTAGATCCGAAATTGTTGGCAAGCACTAATGCAAGTACATATACgcaaaagaaatttaagttGGAAACTGGCTTGTTGATAAATGCTGAAAATGATGGTAGTAATTCTCAAATGCATTTTACAAATGACGATAATGAAGATGACAATGACCAGAATTATGAGAATGATGGAATATTTGGCCATGGGGTGGATCAAgaagaaaatatacaaaattctttggcaaataatatgtatatagatgAAACTGAAGCGGCTACACAagcaattttaaatacagaagATGATGTATTTGGAAGTCAAGTGGATCACGAAGAAAATATACAGGACTCTTTTTCAAATAATGTTTATATAGATGAAACTGAAGCTGCCACACAGACCATCTTAAATACAGAGCAAATTTCTGTTGATAATTTTCCTACTGAAGAAATTATAACCGATTGGCTTTCGAAGTAG
Protein Sequence: MAEETIDLIEETNDEIENWIYYNNDIKAQESTDVNSFNEDSNQQLMCIGSANTVVNEENKFQYADGDVNENDEEFQDNGNDTSEHHLILKEIIDENGHLVEEYFCQRCNMSYSSIEEFLGYHPLLELLNENPEDNEEPQHEELPTGTENKLWDLVENLDDSQDVVEEENYIEMKPNIAHDGSFMEKEASNNTVEPEMEHYFCYDCQQVFTDLTTAENHDCNEQLEDCSDFSKSNTTLDTDNDNNVYRCQLCDKDYTSFRSFTNHQRWHKKSESLLGHTKTLHDEPAVCEICNTIFASEKNLKLHMKMHKKHTLKTIQEALPVGAQNEYKDLNQFFCEICNKSFDQKLLVIHKNMHQHLEEYSCSKCNKQFENLPSYEIHMHMHEDNVKKLTAIKNPNTANTAEDAPSTSSQRLTHGGKRKHACQYCGKEFQRPYEKVKHERIHTGEKPYECEVCGKTFRVSYSLTLHLRTHTDIRPYVCATCNKRFKQQSVYVHHLKTHVVECAYKCDICGKSFRTSVQLSGHKNIHTKPYNCTECNRPFASLYAVKIHMKTHNKCHKSNKNLKNRCSICGASYARLFALSLHIKEQHGINVDPKLLASTNASTYTQKKFKLETGLLINAENDGSNSQMHFTNDDNEDDNDQNYENDGIFGHGVDQEENIQNSLANNMYIDETEAATQAILNTEDDVFGSQVDHEENIQDSFSNNVYIDETEAATQTILNTEQISVDNFPTEEIITDWLSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00900833;
90% Identity: -
80% Identity: -