Ltes029391.1
Basic Information
- Insect
- Linnaemya tessellans
- Gene Symbol
- -
- Assembly
- GCA_951800035.1
- Location
- OX637534.1:32552714-32558035[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0005 0.092 15.0 0.2 1 23 359 382 359 382 0.95 2 12 5e-05 0.0093 18.1 3.9 2 23 385 406 384 406 0.98 3 12 0.00032 0.06 15.6 0.2 1 23 413 435 413 435 0.98 4 12 1.4e-06 0.00025 23.1 0.9 1 23 441 463 441 463 0.98 5 12 0.0035 0.65 12.3 7.5 1 23 470 492 470 492 0.98 6 12 3e-06 0.00055 22.0 2.2 1 23 498 520 498 520 0.96 7 12 0.00014 0.027 16.7 0.1 1 23 526 548 526 548 0.95 8 12 4.7e-05 0.0087 18.2 0.9 1 23 554 577 554 577 0.97 9 12 0.00064 0.12 14.7 1.8 1 23 583 606 583 606 0.95 10 12 1.1e-05 0.0021 20.2 1.2 1 23 612 634 612 634 0.98 11 12 0.00011 0.02 17.1 0.5 1 23 640 662 640 662 0.96 12 12 0.0017 0.31 13.3 0.2 1 22 668 689 668 692 0.92
Sequence Information
- Coding Sequence
- ATGGAATCTGTACGTTGCTATTTGTGCGACCATGAGTTCGTAGAAGGTGAAGAGCCGTGGCTCATGTTTGAACAACGATTACGTGAAGATGGAAAAGTTGAGTGCTCACTGGCCGATTTGCTAGGTGCAATCTTACAGAAGCATTTGGAAGAAGCCTTAGCCCATTCCACATTGCTTTGTGATTCGTGCAACGCAGATGTTCTGGAATATGAAAATCTCGAAAAACGATTTTCCCAATTAAGGGAAAGAATTTTAACTTCATACAAAGATAATTCTACTGTACGAAATTTAAATAATCTGATGCAAAACACTGCCTTAAGTAATAGTTCCTTGCCACATCAGGTCGTTGGAACTAAATTCCTCATAAATACTCCCGTAGATATAGATAATTTGACACACTCTGAATATGTTGGTGTTATGGATATGGATTTAGTCGAAGAAGTTCAGGATGAAGAATTGGACCTCGAAAGACAGGAAAATATAAGTGTTCTAAGCGAAGTAAATGTTTCGAATCATGCTCAAGGTGGTTTCATAGACAATGTTACTTCACAAATCATGACAGATAATTTCGATTTTGCTGCTTTCAATGAACACGTTGCCCAAAACTCTTTACCTTCTGGAGTATTGAATTTGTCTGATGGTCTCGTGAATTTAGATGTTCCCGAAAAATCCATAGACGTACGTGATATAACCTTGGACGAGCAAGATATAATTATTTACGATGCCAATCCGGACCAGATCCAACAAAGTGAATTAATTGTACCGGATAACTCTGGAGATTTAAAAAGTTATGAAAGTAATGAAGATGATGAtctgaattttattattagcgCAGACATTTTTACGAGTGATGGTAACTGCGAAGACTCCCGTCAATCATGTATTTCTGAAGTATTGTTGACCAATAGTGAAAACCAGAAAAAGACTGTTACTTCCGATCCGCAAAAGAAATCCCCGAAGCCTGTTTGCAGGAAAGATGGCAAAGCTTTTATTTGTCTTTTATGTGAAACATCTAGCCAGTTTGAACGACCTGAGTTAATCGAACATTTTCAAACATTCcacaatacaaaattttatatgtgcGAGCAATGCAATGAGGGATTTGGAAGGCGCCAAGATCTCAAATCACATACTGAAGTTGGCCATATAGTTCAGTGTGAACATTGTGACCGTACATTCTCCAATACACGTATGTATCGCATACACAGACGTACACATTATGGCAGCACAAAGCCCTTCGAATGTTCTGTATGCCAGAAAATGTATGTATCTAAAGCGATCTTGGAAGAGCACATGAACACACATACAGGTGTAAGACCGTTTCAATGTACCGAATGTCCCAAAGATTTTGCTTCGAAATATACACTGCAAACACATTTGAAAATTCACAAGGAACGCCCGCGTCCATTTCAGTGTGATCACtgccaaaaatgttttttgaatcAGCAAAATCTTAACCAACACAAAAAGTTGCACGTATCGGTAAGAGCGTTCCAATGTGATGTATGCAACAAGTCCTTTACTACTCAGCATAGCTTGCAAGTTCACAAAGTTGTACATAAAGGACAGAGGCCTTTCCTTTGTCGTATTTGTGGTAAGGCATTTGCACGACGACCGGAAATACAAGATCACGAACGCACTCACACCGGCGAAAGGCCATTCAAATGTGATTTCTGCCCCATGGCATTTGCCCAGCGCACCAATTTAGCCACCCACAGAAAGTCAACACATTTGAATGAAAAGTTACATAAATGCGATATATGTTTGAGATCTTTCAAGCGTAAACGTCTGCTGGATTACCACATACAGGCAATTCATACCGGCGAACGTCCACATAAATGTGAAATATGTGGGGCAGGATTTGTCTATCCAGAACACTATAAGAAACATATGCTGATACACAGTGGCAAGAAGCCGTACGCCTGTGAAGTATGTGGGAAGCAATTTAATAGCCGTGATAACCGCAATGCTCACCGTTTCGTGCATAGCGATAAGAAGCCATATGAATGTATGGAATGTGGGGCGGGCTTTATGCGTAAACCGCTGCTTTTAACACACATGaagcaaacaaaacatataaATGATACAATTATAGTAAATCAGCCCCAATTTACACAACAACAAGTGGCAGAAAGTGGACAAGAGGAGCTTTCCTCTGTGCAGCAGTACATCAATTCACAAGAAGAAGACTTTGAAATAGACGTTGACAATGATCTGACGTCACAGGAGGTATCCAATGAGCCGATCGAGAATATCATATTCAAAACTGAAAACTTGCTGGCCGAAAATGTTTCCACCGCTATAATTACTGATGCAGACGACAGTGTAATAGCGGGAGTGGACGAACATTTAATAAAGGGTGAACTGGACCATGTAAAATATTTAGAGTTTGAAGACTTGGAACGTGAAGGACATGAAACATTAACGTGGGTGGATATAGGAGTTGGTAAAGTTTAA
- Protein Sequence
- MESVRCYLCDHEFVEGEEPWLMFEQRLREDGKVECSLADLLGAILQKHLEEALAHSTLLCDSCNADVLEYENLEKRFSQLRERILTSYKDNSTVRNLNNLMQNTALSNSSLPHQVVGTKFLINTPVDIDNLTHSEYVGVMDMDLVEEVQDEELDLERQENISVLSEVNVSNHAQGGFIDNVTSQIMTDNFDFAAFNEHVAQNSLPSGVLNLSDGLVNLDVPEKSIDVRDITLDEQDIIIYDANPDQIQQSELIVPDNSGDLKSYESNEDDDLNFIISADIFTSDGNCEDSRQSCISEVLLTNSENQKKTVTSDPQKKSPKPVCRKDGKAFICLLCETSSQFERPELIEHFQTFHNTKFYMCEQCNEGFGRRQDLKSHTEVGHIVQCEHCDRTFSNTRMYRIHRRTHYGSTKPFECSVCQKMYVSKAILEEHMNTHTGVRPFQCTECPKDFASKYTLQTHLKIHKERPRPFQCDHCQKCFLNQQNLNQHKKLHVSVRAFQCDVCNKSFTTQHSLQVHKVVHKGQRPFLCRICGKAFARRPEIQDHERTHTGERPFKCDFCPMAFAQRTNLATHRKSTHLNEKLHKCDICLRSFKRKRLLDYHIQAIHTGERPHKCEICGAGFVYPEHYKKHMLIHSGKKPYACEVCGKQFNSRDNRNAHRFVHSDKKPYECMECGAGFMRKPLLLTHMKQTKHINDTIIVNQPQFTQQQVAESGQEELSSVQQYINSQEEDFEIDVDNDLTSQEVSNEPIENIIFKTENLLAENVSTAIITDADDSVIAGVDEHLIKGELDHVKYLEFEDLEREGHETLTWVDIGVGKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01138249;
- 90% Identity
- -
- 80% Identity
- -