Basic Information

Insect: Linnaemya tessellans
Gene Symbol: -
Assembly: GCA_951800035.1
Location: OX637536.1:91236211-91239148[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.012 2.1 10.7 3.6 1 23 32 54 32 54 0.97

2 16 1.7e-06 0.00031 22.8 1.3 1 23 64 86 64 86 0.99

3 16 3.3e-05 0.0062 18.7 0.9 1 23 92 114 92 114 0.93

4 16 2.3e-05 0.0042 19.2 0.1 1 23 120 142 120 142 0.97

5 16 0.00015 0.028 16.6 1.4 1 23 149 171 149 171 0.96

6 16 8.6e-05 0.016 17.4 4.2 1 23 177 199 177 199 0.97

7 16 3.2e-07 5.9e-05 25.1 4.9 1 23 205 227 205 227 0.99

8 16 0.041 7.6 9.0 1.6 1 23 233 255 233 255 0.98

9 16 0.00019 0.034 16.3 2.0 1 23 322 344 322 344 0.98

10 16 3.4e-05 0.0062 18.7 0.3 1 23 351 373 351 373 0.99

11 16 0.00037 0.068 15.4 0.2 1 23 379 401 379 401 0.93

12 16 1.4e-06 0.00027 23.0 0.9 1 23 407 429 407 429 0.97

13 16 0.001 0.19 14.0 3.6 1 23 436 458 436 458 0.96

14 16 2.6e-05 0.0048 19.0 1.5 3 23 466 486 464 486 0.98

15 16 0.0023 0.42 12.9 6.5 1 21 492 512 492 514 0.96

16 16 1 1.9e+02 4.6 2.1 1 13 520 532 520 542 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.012	2.1	10.7	3.6	1	23	32	54	32	54	0.97
2	16	1.7e-06	0.00031	22.8	1.3	1	23	64	86	64	86	0.99
3	16	3.3e-05	0.0062	18.7	0.9	1	23	92	114	92	114	0.93
4	16	2.3e-05	0.0042	19.2	0.1	1	23	120	142	120	142	0.97
5	16	0.00015	0.028	16.6	1.4	1	23	149	171	149	171	0.96
6	16	8.6e-05	0.016	17.4	4.2	1	23	177	199	177	199	0.97
7	16	3.2e-07	5.9e-05	25.1	4.9	1	23	205	227	205	227	0.99
8	16	0.041	7.6	9.0	1.6	1	23	233	255	233	255	0.98
9	16	0.00019	0.034	16.3	2.0	1	23	322	344	322	344	0.98
10	16	3.4e-05	0.0062	18.7	0.3	1	23	351	373	351	373	0.99
11	16	0.00037	0.068	15.4	0.2	1	23	379	401	379	401	0.93
12	16	1.4e-06	0.00027	23.0	0.9	1	23	407	429	407	429	0.97
13	16	0.001	0.19	14.0	3.6	1	23	436	458	436	458	0.96
14	16	2.6e-05	0.0048	19.0	1.5	3	23	466	486	464	486	0.98
15	16	0.0023	0.42	12.9	6.5	1	21	492	512	492	514	0.96
16	16	1	1.9e+02	4.6	2.1	1	13	520	532	520	542	0.81

Sequence Information

Coding Sequence: ATGGAAGGTGGTAACGTTAAAGATgttgataaatttaaaatgtatgcaacaaaaaaaactgcCATAAAGCAAGAAATGAATACGACAGAAATTTATCCGTGCCATAGATGTAAAAGGAAACTAAAATCCAAATTATCATTATTGAAACACCAAGAACTGCACGAAAACAGAGACAACGATGGAAGGACATATGAATGTAATATATGCAATAAAGTATTTCAATACACGTCTCTTTTGAGGGAACACCAACGATCTCATATTGGCGAACGACCGTATTTATGTTCGGTGTGTGGCAAAGGATTTACATCGTCAGGCAGTCTGAAACAGCATTCATTCCGTCATCTAGAGGAAAAACAATTTCCATGCCCAGACTGTCCAAGATCATTTCCCACAAAAACAGATATGCTCTCCCATTATGCTATTCACAAGGCCAAACCAAGAAATCATATATGTGATGTTTGTGGTCGCGGATTTTACAAACCATACTTGTTGAAACAACACAAAATGTACCACAATAATGAGCGACCATTTGCTTGTGAATTTTGTGATAAacgCTTTTGTACGAGTGAAAAAGTAAAACGTCATACCCGTATTCATACCGGCGAAAAACCATACAAATGCAATTATTGTGAAAGATCGTATTGTCAGTCAAGTGAATTAATGAAACATATGCGATCCCATTTGGGTGACAATATCTATCAATGTGAACTATGTCCCCATAAATTACCGACTGTAAAACTTCTGCGAAGTCATTTTACAACGCATAAAAATGATGATGAAGAAACAAAAGCCCAAAATTTAGCCGCTTTAAATGCATTGGAAATGAAGGGAATCCAGATTGGTGATGTTAAAATAAAAGATGAACAAAATGAAACAATGAAATGCTTTAAGCAACATAAACCAGCAGCAAGAAAAATGAAGTTCCTAAAGGAAAAAGACAGTCAAAAGGAACCACAACAGTTTTATCCTTGTGATAAAtgcaaaagaaaactaaaatcaGAAACGTCACTAAGAAGGCATCAAAACCTGCACGACAATAAAGAACAAACATATAAATGTTCAATATGTAATGAAGTATTTGATGAGCGCTCAATATTAAAAGAGCATATGCGAATACACAgtggcgaaaaggtatttttatgttcGGAATGTGGAAAGGGATATACAACGGCTGGTGGTTTGAAAGAACATTCCTATCGccatttaaaggaaaaaaacttcTCTTGTCCTGACTGTCCGCGCTCGTTTACGACCAAAACTGATCTGGTATCACATCATATAATTCATAAAGCGAAGCCAAAAAATCATATTTGTGACATATGCGGACGAGGCTTTCACAAGCCATtcctattaaaaaaacataaaatgtatCACAATAACGACCGACCATTTGGTTGTGAGTTTTGCGAAAAACGCTTTGTCACAAATGAAAAACTGAAACGCCATACTCGCATTCATACCGGCGAAAAGCCTTACAAAtgcaattattgtaaaaatgCCTACTGTCAATCGAGTGAACTGATCAAACATTTGCGTTGTCATTTAGGCGAAAATGTCTATCAATGTGAACTATGTCCATTACGTTTTAAAACGGTCAGAATTTTACGTTGTCATTTTTCTACGCATAAAAATGACGACGATGAAACTAAGACACGAAACTTAAACGAATTAAATGCTTTAGAAATGAAGGgcgtattttttaaataa
Protein Sequence: MEGGNVKDVDKFKMYATKKTAIKQEMNTTEIYPCHRCKRKLKSKLSLLKHQELHENRDNDGRTYECNICNKVFQYTSLLREHQRSHIGERPYLCSVCGKGFTSSGSLKQHSFRHLEEKQFPCPDCPRSFPTKTDMLSHYAIHKAKPRNHICDVCGRGFYKPYLLKQHKMYHNNERPFACEFCDKRFCTSEKVKRHTRIHTGEKPYKCNYCERSYCQSSELMKHMRSHLGDNIYQCELCPHKLPTVKLLRSHFTTHKNDDEETKAQNLAALNALEMKGIQIGDVKIKDEQNETMKCFKQHKPAARKMKFLKEKDSQKEPQQFYPCDKCKRKLKSETSLRRHQNLHDNKEQTYKCSICNEVFDERSILKEHMRIHSGEKVFLCSECGKGYTTAGGLKEHSYRHLKEKNFSCPDCPRSFTTKTDLVSHHIIHKAKPKNHICDICGRGFHKPFLLKKHKMYHNNDRPFGCEFCEKRFVTNEKLKRHTRIHTGEKPYKCNYCKNAYCQSSELIKHLRCHLGENVYQCELCPLRFKTVRILRCHFSTHKNDDDETKTRNLNELNALEMKGVFFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -