Ltes037143.2
Basic Information
- Insect
- Linnaemya tessellans
- Gene Symbol
- grau
- Assembly
- GCA_951800035.1
- Location
- OX637534.1:95836182-95851054[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.6e-05 0.003 19.7 0.9 1 23 357 380 357 380 0.97 2 16 0.00026 0.047 15.9 1.0 2 23 386 407 385 407 0.96 3 16 0.0023 0.43 12.9 0.5 2 23 416 438 415 438 0.95 4 16 0.0009 0.17 14.2 0.6 3 23 445 465 443 465 0.96 5 16 0.00058 0.11 14.8 1.2 2 23 474 496 473 496 0.96 6 16 7e-05 0.013 17.7 1.3 2 23 506 528 505 528 0.96 7 16 3.4e-05 0.0063 18.7 0.2 2 23 535 556 535 556 0.97 8 16 0.0039 0.72 12.2 2.1 3 23 564 585 563 585 0.96 9 16 0.0029 0.53 12.6 3.0 1 23 904 927 904 927 0.95 10 16 0.00012 0.022 17.0 0.4 1 23 932 954 932 954 0.97 11 16 9.3e-06 0.0017 20.4 0.1 2 23 963 985 962 985 0.96 12 16 5.9e-06 0.0011 21.1 0.3 3 23 992 1012 990 1012 0.97 13 16 3.7e-05 0.0069 18.5 0.1 3 23 1022 1043 1020 1043 0.96 14 16 2e-06 0.00037 22.5 0.5 2 23 1053 1075 1052 1075 0.97 15 16 2e-06 0.00037 22.6 0.3 2 23 1082 1103 1082 1103 0.98 16 16 3.2e-06 0.00059 21.9 0.8 1 23 1109 1132 1109 1132 0.98
Sequence Information
- Coding Sequence
- ATGGATAACTTGAATAATAACTCCTTCATATGCCACGCATGTTGGCAGGAATTACGTAATTTCCACAACTTCTACCTAAATATCGAAAAagttcatacaaaattaaatgttataataaaatcagaaataaTTTTCGAAGATGATCCTAGTGATAACGGAGAttcatctaaaaaaaaatttatgaaaagcgAACAAAATACCCAAGTTGAACTTGGCACATTGTTCTTAAAGGACGAAAATCCTTGTGAaatttgtttagaaaaaaatatgtatggaaagtactgtttgaaaaaaagaaattacgaTCATACTTTTCACTTaaagagaattaaaaatattaagaaaaatattataaaaacaaatcaaataacAAGATTGGAAAAAGATGATGATGGCACTGAAGTAAGTAAACCGGAAGTTAATAGAGCGGATGAAAATTCGTTagacatttgcaaaaaaaaagatatgcAGAGCAGACCTTGTTTAAAAAGAGCAACACGTAAACttgatttaaagaaaagtaaagataataagaaaaatattacagaAACAAATCAACTAAGAAAATTAGAAAAGGATGATGATACCACTGAAACAAGTCAGCCGGGCGAACATCCTTTAGAGACGGTTACACAAAAATGTATGGAGGACAACAAACCAAAACTATTAGAAAAACATAAAGAAACTGTCCAAACAAGCAAAGAGCAAGCTAATTTATATGGAAATCGATgtgaaatttatatagaaaatggCTCAAAAGAAATCAATTTGAATGACAATGTTAGCGATCATAATGATAGTTTGGAAAGTGATGACGACGATCCTTTATCAACTTTGCTTGATTCATTGAAAGTTgaacaaatacaacaacaacaggatAAATTCATTGCcgataattttcaaattaactgTTCCCTCTGTGAAATCTCACTGCCTTCATATGCTATTATGTCCACACACTACAAAGAGGAACACCATCAGCGTGGATATGTGACTTGTTGTAACCAAAAGCTTCATTCACGTTCAGAAATAGTGGATCACATTAACTTACACAAAAATCCCgaatgttttaaatgcaaagaCTGTGATAAAAACTTGAGCAGTCGTTCTGGCCTGAAGTTGCACATTAAAAATGTTCACGAGAAGAAAATTGTGAAATGTGAAATATGTGGCAAATGCTTAGCAAGTGAATCAAGTCTGAGATCACACAAATTACTACATGAAGGCTATAATAAGGGTAGATTACCTTGTAAACAATGCGATAAGTACTATCTCACCAAAGCCACCTTAAATAAGCATATACGACTTGTTCAttcaaaaaattacataatttgTGATCTATGCGGTAAGTCTCTGCAGGACAGTTACAGGTTTAATCGGCACATGTTAAAGCACGAaggaaaaatgaaagaaaaagtaAGCTGCAAAGTTTGTGGACGCATTTTATCCGATATGCCATGCTTAAAGCGTCACATGCGCTCAAACCATCCTACAGATGGAGTTAGAGCTGAACTTAATTGTCATATGTGTTCAAAAGTATTTGCAAGTACGGCTTATCTTAAAATGCATATAAGAAGGGTGCACGAACACAAATACGCAAGAAAGTGTGCATTGTGTGAGAAAACATTTAAGAGCCCTGCCGCCTTAAAGgaCCATATGGGAACTCATACTGGTAGGCCTGTAAGCGCTTGTGGTTTTTGttctaaaacattttattcaaaTGGTAATATGCATGCGCATCGTAAAAGAGTGCATCCTGTAGAGTGGAAGGAatctttgaaaaaatatttttccgaaAATTTACCGGAAAAGgatGAAACTGTAAATGATCACTCCTGCATATGCCTAAAATGTTGGCACGAACTACATAACTTCCATACTTTCTACTTAGAAATCGAAACAGCTCATACAAACTTAAATACAATAGCAGCAGAAACAGTTTCTGATGATGTTTTAAAGAATAATGGAAAACATATCATATCCGATAGTTATGACAATAGTCCTACCGAAcctgaaactttatttttaaaggaaGAAAATCCTTCAGGAATTTATGAAAAAGAGGAGTATGAGGAGAATGTGAGATGTTTAGAAGACTCAACGACGACTGCAGATACAAGTTCTACTGTAAATGGAAGTACAAGCGATGTTCAAAATATTGTAGTGTGTACAACTGAAGAGAACAATATCGAGGAAGTTAGTTGTATGGATAAGTGTAGTAAATTTAAGGACTACGTAAAGAAAACTATAAATGGCAGAACAAATTATGGAAAACATTTGAGAAtaagacttaaaaaaatttcagctaaaaaaatattaactgtaATAAACAAACAGGAAGTTAGTAACAATCAACTTGAAAGTGGCATTCAATTGAATAAAGGAAAAGATGGCCCTAATAACAACAAGGCGATCGATCATTTTAGCGATCAGAATGATAGTTTGGAAAGTGATGACGACGATCCTTTATCAACTTTTGTTGGTGCATCCAAGTTAGAACGATTGCAACAAAAACAGGATAAATTCATAGCTAAAAACTTCCAGATTAACTGCTCCTTTTGTGAAATCCCACTGGATTCATTTGCTATAATGTCTACACACTACAAAGAGGAACACAATCAGCGTGGCCATGTCTCTTGTTGTAATCAAAAGCTTTATACTCGTTTAGATATAGTGGATCATATTAAAGTACATCAGAATCCCGAATATTTCAAATGTACAGAGTGTGGTAAAATAACATTTAGCCGTGTACACCTAAGGCTGCACTTCAAAAATGTTCATcaagagaaaaattttaaatgtgatACTTGTGGCAAAGCTTTGGCAAATGAATCAAGTTTGAAAACGCATAAATTATTACATGATGCTGACAATGTAACAAGATTACCCTGCGAACAATGTGATAAGTCATATGCGTCGAAACGTGCATTGAACAATCACATTCGCATTGTGCACtcgaaaaaatatgtaatttgtgATGTTTGTGGTAAATCGCTCTCAACCAGTTACAATTTCAAGGTACACATGTTAAAACATGAAGGAATAACGAAACCACCagttatttgtaaaatttgtggACGCACTTTATCCGACATTGGCGGTTTAAACCGACACATGCGCTCACTTCATCCCCCGAATGGTGTCCAATGTGAAATTAAGTGTCCTATGTGCACGACAGTATTCAAAAATAATGCGAATCTTCGAATGCATATAAAAACTTTACACGAAAAGAAATATGAAAGGAAGTGTACAATGTGTGGTAAAACATTTATAAGACTAGGCGCCCTAAAGGAACATATGGCTACACATACCGGCACTCCATTATATTCCTGTCCTTGGTGTCCGAAAACTTTTAAATCCAATGGCAATATGTATAATCATCGTAAAACCGTACATCCAGAGAAATGGGAAGAACTGCAACGTCAAAAATATGTAgttacaaatttaaaagaagattttAGGAAAAAATGTTAA
- Protein Sequence
- MDNLNNNSFICHACWQELRNFHNFYLNIEKVHTKLNVIIKSEIIFEDDPSDNGDSSKKKFMKSEQNTQVELGTLFLKDENPCEICLEKNMYGKYCLKKRNYDHTFHLKRIKNIKKNIIKTNQITRLEKDDDGTEVSKPEVNRADENSLDICKKKDMQSRPCLKRATRKLDLKKSKDNKKNITETNQLRKLEKDDDTTETSQPGEHPLETVTQKCMEDNKPKLLEKHKETVQTSKEQANLYGNRCEIYIENGSKEINLNDNVSDHNDSLESDDDDPLSTLLDSLKVEQIQQQQDKFIADNFQINCSLCEISLPSYAIMSTHYKEEHHQRGYVTCCNQKLHSRSEIVDHINLHKNPECFKCKDCDKNLSSRSGLKLHIKNVHEKKIVKCEICGKCLASESSLRSHKLLHEGYNKGRLPCKQCDKYYLTKATLNKHIRLVHSKNYIICDLCGKSLQDSYRFNRHMLKHEGKMKEKVSCKVCGRILSDMPCLKRHMRSNHPTDGVRAELNCHMCSKVFASTAYLKMHIRRVHEHKYARKCALCEKTFKSPAALKDHMGTHTGRPVSACGFCSKTFYSNGNMHAHRKRVHPVEWKESLKKYFSENLPEKDETVNDHSCICLKCWHELHNFHTFYLEIETAHTNLNTIAAETVSDDVLKNNGKHIISDSYDNSPTEPETLFLKEENPSGIYEKEEYEENVRCLEDSTTTADTSSTVNGSTSDVQNIVVCTTEENNIEEVSCMDKCSKFKDYVKKTINGRTNYGKHLRIRLKKISAKKILTVINKQEVSNNQLESGIQLNKGKDGPNNNKAIDHFSDQNDSLESDDDDPLSTFVGASKLERLQQKQDKFIAKNFQINCSFCEIPLDSFAIMSTHYKEEHNQRGHVSCCNQKLYTRLDIVDHIKVHQNPEYFKCTECGKITFSRVHLRLHFKNVHQEKNFKCDTCGKALANESSLKTHKLLHDADNVTRLPCEQCDKSYASKRALNNHIRIVHSKKYVICDVCGKSLSTSYNFKVHMLKHEGITKPPVICKICGRTLSDIGGLNRHMRSLHPPNGVQCEIKCPMCTTVFKNNANLRMHIKTLHEKKYERKCTMCGKTFIRLGALKEHMATHTGTPLYSCPWCPKTFKSNGNMYNHRKTVHPEKWEELQRQKYVVTNLKEDFRKKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -