Basic Information

Insect: Linnaemya tessellans
Gene Symbol: -
Assembly: GCA_951800035.1
Location: OX637536.1:91870125-91876698[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 3.7e-09 9.2e-06 27.1 0.0 3 36 13 46 12 51 0.91

2 2 9.8 2.4e+04 -3.1 0.0 29 44 572 587 572 587 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	3.7e-09	9.2e-06	27.1	0.0	3	36	13	46	12	51	0.91
2	2	9.8	2.4e+04	-3.1	0.0	29	44	572	587	572	587	0.84

Sequence Information

Coding Sequence: ATGGCAAAAAAAGGTGAAGTAAGAAAATGGGTGGCGGATGACATGAGAAAAGCTATCCAAGCAGTTAGAGGCAACGAGATGGGAATTCTTTTGGCGTCTAAATCATTTAATGTCCCCCACACCACCTTGCAGAGAATGTCCAGAAGCGAAAAAAGCATTGATGATCTTTTAGCAACTAAACTAGGCAGACCTCCCACCTTAACTGCATCTATTGAAGGAGAATTGGTAAAATATTTGCTAGAGATGGAGTCGCGGTACTGGGGTTTAACACGCGCAGACATAAGATCATTAGGATTCCAaattgcaaatttaaataatattccaAACAAGTTTTCGGTTGCAAAAGAATGTGCTGGAAAAGATTGGCTGCGCGGATTCTGTAACCGccacaaaaatgttttaagctTCCGAAAACCAATGGGAACAAGCGCCGACCGAGCTCGTGGATTTTCTCGGGAAAATGTAGGGTTATTTTTTGACTTACTGGAACAAGAATACacaaaaaatgattttccaCCCACTCGAATTTGGAATGTGGACGAAACTGGAATATCAGCCGTACCTTCTCATCAACCGCAAATAATAGCCAGAAAAGGTAAAAAACAAATTGGTGCAATGACTTCAGCTGAGCGAGGGTCATTCGTGACAGTCATAACATGCATGAGCGCAGGAGGTGCATTTATTCCGCCTTTCTTTATCTTTCCACGAAAGAACCAAAATCCTCTTCTTATGAAAGAAGCTCCACCAGGTTCGGAATCAGCATGTCATTTATCGGGGTGGGTTCAAATTCCCATCTTCACAAAATGgttcaaacattttttaggCTTTACAAAGCCATCAGCAGCTGAGCCAGTTCTACTCATTCTGGATGGTCACTATAGTCATACGCGAAACATCGACGTGCTTAATTTAGCGCGAGAGCACAGTGTGACAATAATATCGCTACCGCCACACTCAACCCACAAGCTTCAGCCACTGGATAAAACCTTCATGGGGCCGTTTAAAACCTACTACAACGACGAAGTAAGAAGATTTATGCGAGAGCAAGGGAGGAAAGTATCGCATTTCGATATTGCTGGCTTATTTACAAAAGCCTACTTGAAGGTTCAAACGGGACAAATAGCCATAAGTGGCTTTAGGGCCACAGGAATTTATCcgtttaataaacatatttttagcaATGCGGATTTTATTGCGGAAAACTCGCCAGaaACTCAAATTGAGCCCATTAATGACATGGCAGTTACAGAAAATTCTACTGAACATCATTATGAAATCTGTACGAGTGTATTAGAGCAACAACCAACCACAAGTGGACAGTATATCTCTCCATGGCAGATATCTCCACCGCCTAAATTGGTAGACCGAAAAACTAAAGCGACCGTTTTAACAACCTCTccgtacaaaaacaaattagcaGAAAGTACTGATAACATCAACAGAAAGCGCAAAGTGCCCATGGTCGCtcaaatgaaagcaaaaacttcTAAAAAGAAAGCCACAACCAATAGCGATGTTCCCTTTAATTCGAGTGATAGTGACGAAACCGTTAACTTAAATGACAGTACGGATGAGGAAGAAATGAGCGATGTACCACCGACAAAAGATGTAGCTTGCAACTATTGCGATAAAATATACAAAGATGACTCATCTATAAAAGCATGGaaACCCTTAAATGACAATATTTTGTGCGATATTattgatatttataaaaactacaacaGTTTGTGGGATGTCAATCATTTAGCATACACAGTTAAGGAAAAACGACATGAAATAATGCAGTCTATGTTAAAcgaacttaaaaacaaaatgaatattTCTTTAGATCTATATAGATTGGAAAAGCACTTGAATTATATTCATAAATCTTTTGCTAAAGATAAACAACACCGATTGGAATGTGAAGCTAAGCAAGAAGATTTCCAACCCGCATGTTCTTATTTTAAGAAATGTGATTTTTTAGAAGCTCATCAAGGACCATTTAAATGTTCCAACTGCCCAGATATTATTGAAACATATAATGATTATCAAATACACAAATCGCTGCACGATGATTCGATGCCATTTAAATGCCAAGAATGTGGCATGGGTTTTAAGAAGATTTCAAATTATACGATACATGCAAAACGACATTTGCGTGTCTTTAAATTTCATTGCGAGATCTGTGGTAAAGGTTATCCCTTTAATGCTGAGCTGGATCTTCATATGCGCTCTCATACAGGTGCCCAACCATATTTATGTTCCGTGTGCGGCGAAGGATTTCGTACGGCCATTAGTTATGATAATCATATACGACGACATGAAGaaagatttaaatatttttgccataTATGTAAGAAAGGCTTTAACCATATGACCCGCCTCAATGATCATGTCAAAGCTCATCTCAATGTTCGTGATGTTATTTGTACGGTTTGTGGAAAAGGTTTTACTAGTCGAAAGTATTTAAATCACCATAAGCGTATACATGAGGGCAAAAACTACAGCTgcaatatttgtggaaaaagcTTTGCGCAAGATGCTGGCCTTAGAgcacataaaaaatatcatgGAACACCAATTGGAATAAGTAGTATACAAAAAAGaacgaaagaaatttaa
Protein Sequence: MAKKGEVRKWVADDMRKAIQAVRGNEMGILLASKSFNVPHTTLQRMSRSEKSIDDLLATKLGRPPTLTASIEGELVKYLLEMESRYWGLTRADIRSLGFQIANLNNIPNKFSVAKECAGKDWLRGFCNRHKNVLSFRKPMGTSADRARGFSRENVGLFFDLLEQEYTKNDFPPTRIWNVDETGISAVPSHQPQIIARKGKKQIGAMTSAERGSFVTVITCMSAGGAFIPPFFIFPRKNQNPLLMKEAPPGSESACHLSGWVQIPIFTKWFKHFLGFTKPSAAEPVLLILDGHYSHTRNIDVLNLAREHSVTIISLPPHSTHKLQPLDKTFMGPFKTYYNDEVRRFMREQGRKVSHFDIAGLFTKAYLKVQTGQIAISGFRATGIYPFNKHIFSNADFIAENSPETQIEPINDMAVTENSTEHHYEICTSVLEQQPTTSGQYISPWQISPPPKLVDRKTKATVLTTSPYKNKLAESTDNINRKRKVPMVAQMKAKTSKKKATTNSDVPFNSSDSDETVNLNDSTDEEEMSDVPPTKDVACNYCDKIYKDDSSIKAWKPLNDNILCDIIDIYKNYNSLWDVNHLAYTVKEKRHEIMQSMLNELKNKMNISLDLYRLEKHLNYIHKSFAKDKQHRLECEAKQEDFQPACSYFKKCDFLEAHQGPFKCSNCPDIIETYNDYQIHKSLHDDSMPFKCQECGMGFKKISNYTIHAKRHLRVFKFHCEICGKGYPFNAELDLHMRSHTGAQPYLCSVCGEGFRTAISYDNHIRRHEERFKYFCHICKKGFNHMTRLNDHVKAHLNVRDVICTVCGKGFTSRKYLNHHKRIHEGKNYSCNICGKSFAQDAGLRAHKKYHGTPIGISSIQKRTKEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00900033;
90% Identity: iTF_00900033;
80% Identity: iTF_00900033;