Basic Information

Gene Symbol
ct
Assembly
GCA_951800035.1
Location
OX637536.1:102323193-102367494[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 9.6e-27 2.1e-22 80.7 0.0 3 72 991 1061 989 1066 0.94
2 3 9e-32 1.9e-27 96.8 0.0 3 77 1419 1494 1417 1496 0.96
3 3 9.2e-31 2e-26 93.6 0.0 3 77 1673 1748 1671 1750 0.96

Sequence Information

Coding Sequence
ATGAGAAATCATGACGGTGATGATGATGCTTCTGCTGTCTGGCAGAAATGGATTTTTAATACGACcacagccagccagccagccatccAGCCAAGAGCCACCTTGGCTGAAAAGGAAGTCAACACTCTGAAAGAACAACTGTCCACCAACACACCCAACAACACAGACAGCGATAACAACGCTGATTTGGCCTTGTCCACCAGCACAGCGAACAACACATTTGACTCTAATAGCGAAGCGTTCAAGGCTTTGTCCGCGGAGATCCCACCAAACAAACTACTCTCTCCTACATTCAATAGCAACAACACTAAACTGTTGAATAGTGTGGCAGCTGCTATAACTTTACACCAAAACGGTGGCAACTTATTGGCAACAACACCGTCCCCTTCGCCACCTCTGTCGGACGCTGGCAATAACGTTTGCAGCTCGCAGGAAGAGCAAATCGAGCAACACcagcatcagcagcagcagcaacaaataaACGGTTGCTTGAATCCCAAATTGTTTTTCAATCACGCCCAGCAAGTTATGATGATGGAGGCAGCTGCTGCAGCAGCGGCCGCcgcagctgctgctgctgccgtgCAGCATCAACAGTCGCCAATGCATTCTCCGCAGCCTGCTggccaacaacaacatcaggaCGCCGAGAAGGATGCTTTATTAGCCAAACCCACCAACACAAAGGAAATCAAAGATAATTTAGATTCCAAATTATTAAGTGATACTCAAGCACAGGATAATAACAATCTTGCCACACCCCACACTGAGGAGCAGCGAGCACAAGGTGATGAAAATGCCACTgcggctgctgctgctgctgccacgGAGTGcagtaacaacaataataacatcaatagttttaatagtgatagtaacaacaaaaatagtgtaaattctAAAGTAACAAATCAAAAATGTACGGAAACGGAAACTGAAGATAAAACGGACAATGGCGAAAGTCAGAGGGTGGATGAGGGACGACAGCATGTGGATAATGCGGAAGAAGCAAGAGGGAAATTAATAGATAATAACAACTACACAAACACTGAAATGAAAAACAATCATATAGAATTATTAGCTGCCAAAGATAAAGAGATTAAAGCCTTATTTGAGGAAGTAAAGCGTTTAAGAAGCGTAGAACAAACTCATATAATACAAATTCATCGTTTGGAAGAACACTTGGAAGCCAAACGCCAGCACATTATACATTTGGAATCTAAGCTAGACAAACAGCAAATTAATGAAGCTTTACAAAAatctcaacaacaacaacaacaacaacaatcacCACCACCGCCACCACCCCAAGAAAAGCGACAACGGGAAGAGGATCTTAACGATGACTGTGAAATGTTAGAGGTTAATGAATCGGCTAACCAAGAGGAGGACGAAGATGAAAATGAGATGCAAGAAGTTGTTAAAGATAGAAACTGTGATTTAACGCCACTTGAAAAAGCGAAGCAACACGACGAAGAAGACGAAGAAGACGATgaagatgatgacgatgataataataaccaaaatgaaaataatcaaaattccGCTGACCTAGAAGAGTGTACAAATACTAAAGATTCGCTTAAGGATCTACAAATCAAAAAGGAAACACAATCACCTTTATTATTAGACTCAATTAGCCAACAAAATGCCATCGCTGCAGCTGCTGCAGCCGCCGCTGCCTGCAATAATGACCCcaataaatttcaagagttatTAATGGAACGCACAAAGGCTTTGGTGGCCGCTGAAGCTTTAAAAAATACCGAAGAAACTAAAGTAGTTAACGAAGAGCCCCAATGTTTAGATACAAATGAAAATGTTGCTAGCTCAGATACAAATGAAAATGCAGATGTTGTAGAACATGTTGACGCCTCAAAAGTGCCAAAAATCGAAATACTAGATGATGATGAAGAGGATGAAGGACTAAAATCGAGTTTGAATACGAAAGAAGATGCTGTAGGCAAAACGGATCTATGCTCCAGCATAGATTTAGAAGTTTTGAATGCAACAGCACCAGCAGCTGAAAAGTGTTTAGAAGAAAATGAAGAACAAGAAGATACGGCaacatttaagcaaaatgttGAGCGTTTTGGTACTTTGTTGGGTGAAGAATTGGTGAACTCCTATTGGCGCAGAGGCTTTGATCACACAAAATCTTTGTACGCCCAACAAagccaacaacagcaacagcaacatctgcagcagcagcaacagcaacaacaacaacaacaacgctctttgcagcagcagcagcaacaacagcatcaTCACCAACATCATCAGCATTTAATGATGCAACAGGCCAACGtccaccatcatcatcatcaccaacAGCCAATACAACATCACCATCAACAGCCCACTCAAACGCATTTATCACAACCACCCTGTGGTCCTTCTTCGACCACCTTGCTTAGTCAATTAGTTAATTCTACTTTTTCCACTCCCAACTCTAATACTCCAACTCAATCCTCTTTACGTTCTGCAGATGGCTTCACACATTCGCAGCCCGCTTCACATCTCCATCACCAGCACCACCACCTGCATCATCAAATGCCTGCCCATTTAGTCGAACATCATGACAAGTTGTCACTTAACCATCACGATTCGTCGGCTTCCAGTGCCAGCACACCCAACCTGCAGGAGCAGCGCAACAACGAGGATCACCACAGTTTGTCTTTGAATGGTTCTCTCAAGAACTTGGAGGACAATAACAATAGCTTATGTGCTACACCCACCAGCCATCACATGGCAGCTGGCCACCCCTCACATTTGCCTCACGGCTTTCTGCCCGGTCTACCATTCCAATTCCAAGAACGTGGCCACTTTCGTTTTGCCGATGACTTGCAACTACCACCCGGCACTTCTATGGCCGGCCGTTTGGGTGAGTCCCTGATACCCAAGGGCGATCCCATGGAGGCCAAATTGCAGGAAATGTTGCGCTACAACATGGACAAGTATGCAAATCAAGCCTTGGACACGTTGCATATTTCACGGCGCGTCCGCGAGCTATTGTCGGTACACAATATAGGCCAGCGTATATTTGCCAAATATATTTTGGGTCTATCGCAGGGCACCGTCTCCGAGTTGCTGTCAAAGCCCAAGCCTTGGGACAAGTTGACAGAGAAGGGCCGTGACAGTTATCGTAAAATGCACGCCTGGTCTTGTGATGACAACGCTGTCATGCTACTCAAGTCCTTAATACCTAAAAAAGATTCTGGCTTACCTCCTTATGGCAGTGGTGGCCGTGATGATTCAATGTCTGATGAACGTATAGCTCATATTTTAAATGAAGCTTCTTCGTTGATAAAATCATCTGGTCCCACTTCCATGCACCAGCAACATGAGCATCAAAGAAGAGCTTCTACCATACCAGAAGACTCACGCAGCAACGACGACTCCAAGTCACCTCATCCATCCTGCTCATCGCCATTCTTCAAAGAGCATCACAGCAAGTCACAGGGTGAAACGATTATGCCCGGTCAAGGACACATGCGCCCAGATGACGTGAACCCAGAAAAAATGGCCAGATTATATCAAGAGCTTATGGCCAGAGCTCCCCGTGAAGCATTTCCAGGatttttgctaAATCCCTTTTTTAGTGGCGGTCTGCCTTCTGCTGCCGGCATGGGCGCCAATGCATTTCCCGGTTTAGCAGCCGATGAAAATATGCGCCTAGCTTTCGAAAGAGAAATGTCTAAattgcaacagcagcagcaacatgcTGCCCAGCCACCGAATTTCGCCAATTTCTCTAGTCTCATGGCtttgcagcagcaaatgctgaaCGGCGCCCAAGATCTGACTTTGAGTACTGACGATAAACCCAAAGACATTAACAAAGTTAATGGTCAGCGCAGCTCGTTTGAGGGCGCCTCTCAAATCTCCCACACCAACAATGGTCAAACGACACCAAACGCCAAAGATTCTAGCGCTTCAGAAGTGGAACGTCTTTATCCAGGCTTGGTGAAATCCGAACAGGGCAGCAAAACCCCCGCTCCTTTGGTCTCTAGTAATGCTTCTACCACCAACACCAACTCGGCTGCACCCAGTCCTCTCAGCAACTCCATACTCCCGCCTGCTATGACACCTAATGAGGAATTCTCCGCCACCGCTAGCCCTCTACAAAGAATGGCCTCTATAACCAACTCGTTGATAACGCAACCTCCTCTGCCACCTCATCATAATACTCCTCAAAGACCCACAAAAGCAGTCTTGCCTCCCATTACCCAGCAGCAGTTTGACATGTTCAACAATCTCAACACCGAAGACATTGTGCGCCGTGTCAAAGAAGCTTTATCACAATATTCCATATCGCAGCGTTTGTTCGGTGAATCAGTATTGGGTTTGTCTCAAGGCTCGGTATCCGATCTCTTAGCCAGACCCAAGCCCTGGCATATGCTTACACAAAAGGGCCGTGAACCTTTTATACGCATGAAAATGTTCTTGGAAGACGAGAACGCCGTGCACAAACTGGTGGCTTCTCAGTACAAGATTGCCCCCGAAAAGCTAATGAGAACCGGCAACTACAGCGGCTCGCCACAAATACCCCAGGGGTTGGCCAGTAAAATGCAGGCTTCTTTGCCCATGCAAAAGATGATGAGCGAACTGAAATTGCAAGAACCGGCTCATATCATGCAACAAATGCAAGCGGCTGCAGTTATGTCAGCAGCCATGCAGCAACACCAGCAACAGCAAGCAGCTGCAGCCCAGCAAAGTCAACAACAAGCGGCCCAAGCGGCTGTACAAGCCGCCCAAGCAGCAGCCGCTGCCCAGGCGGCCCAACAGCATCATCAAAGTATGCTACTGACTTCGCCGGGACTGCCTCCTCAGCACACTATTGCATTGCCCACAGCCAACTCCCAACCAACATCGGGCAACAGCACGCCAGCTGGCCCTACACCCGACAAGAAGCCCATGATGATGCCCATACATTCACCCCACCAAGGCAATGCCATGCGCAATATGCACCAGCATATGTCACCCACCGTTTATGAAATGGCTGCTTTAACACAAGACTTGGACACTCAGGTTATCACCACCAAAATCAAGGAGGCCCTGTTGACCAACAACATAGGCCAAAAGATATTTGGAGAAGCTGTTTTGGGTTTGTCACAGGGCTCAGTTTCGGAATTACTTAGCAAACCTAAACCCTGGCACATGCTGTCTATCAAGGGGCGTGAGCCGTTTATTCGGATGCAGCTGTGGCTGTCGGATGCCAACAATGTGGAACGATTGCAGGTTTTGAAGAATGAACGGAGGGAGGCGTCGAAACGCCGGCGTTCCACGGGACCCAACCAACAGGATAACAGCTCGGATACTTCCAGCAATGATACCAATGACTTTTACACCAGCAGTCCTGGGCCTGGCTCAGTGGGCAGCTCAGGAGCACCACCCAATAAGAAACAACGAGTTCTATTCTCCGAGGAACAAAAAGAAGCCTTAAGACTAGCATTTGCCCTGGACCCTTATCCCAATGTAGGAACAATAGAGTTTTTGGCCAATGAATTGGGCTTAGCAACGCGCACTATTACCAATTGGTTCCACAATCATCGTATGCGTTTGAAACAACAAGTGCCTCATGGTCCACCCGGTCAGGAAACCAATATACCCACTAGAGAAAACACCAATTCCACACCATTCGATCCCGTCCAGTTCCGTATTTTATTGCAGCAACGATTATTGGAACTGCACAAGGAGCGCATGGGCTTGGGCTGCAACACGCCTTTGCCCTACCCGCCCTACTTTGCAGCTGCTGCCTTGTTAGGACGCTCCTTAGCGGGCATGCCAGGCACTAATGCCCAAACAGCCTTGCCCACCAATGAAGCTGAATTAAGAGCTCTTAATCAAGCCTTCAGAGAACAAATGTCTGGTTTAGATTTGTCCATGAGCTCTTTAAAACGCGAACGCACCGACGACTTTGAAGATGACATGGACGAAAGCCACTTGTCGGAAAATGAAAACGATGATTTGGATGATGAGGACAAAACCAGCGAATATAGAAATTCCGCCTTGACTAGCATGAATGCCCAGAATTTTTTGAATAACATGCGCTTGAACAGAAGAAAGCCCGCTGCGCCACAATGGGTTAATCCTGCTGTGCCAAACGTCAACGAAGCTGATCGCATTATCAATGGTGTATGTGTAATGCAAGGCGAAGGAGAAGGCCCGCAACAAAATTCCGCTGAAGACGAATTAAATAAAGCCCTCGACCACGAAGACAATAACATGATGGAAGCGCCTCATCAATCAGTAATGGAACCCGAAGTGTTGATCAAGCAAGAAAAGGAAGACTGTGAAAGTGATAGTGAGAAGACCAACGCCGAGGACGCTACTGCAATGAGCGAGGAACGAATCAAGGTGTTGCAAGAAGACAAGCTAAGGATGGTGCGTGTCAACCGCTTAAGTAATGAAGATGAAACACTAGCTGCAGGTAATAGCGCCCCAGTACCAGCGTGGAATTATTAA
Protein Sequence
MRNHDGDDDASAVWQKWIFNTTTASQPAIQPRATLAEKEVNTLKEQLSTNTPNNTDSDNNADLALSTSTANNTFDSNSEAFKALSAEIPPNKLLSPTFNSNNTKLLNSVAAAITLHQNGGNLLATTPSPSPPLSDAGNNVCSSQEEQIEQHQHQQQQQQINGCLNPKLFFNHAQQVMMMEAAAAAAAAAAAAAAVQHQQSPMHSPQPAGQQQHQDAEKDALLAKPTNTKEIKDNLDSKLLSDTQAQDNNNLATPHTEEQRAQGDENATAAAAAAATECSNNNNNINSFNSDSNNKNSVNSKVTNQKCTETETEDKTDNGESQRVDEGRQHVDNAEEARGKLIDNNNYTNTEMKNNHIELLAAKDKEIKALFEEVKRLRSVEQTHIIQIHRLEEHLEAKRQHIIHLESKLDKQQINEALQKSQQQQQQQQSPPPPPPQEKRQREEDLNDDCEMLEVNESANQEEDEDENEMQEVVKDRNCDLTPLEKAKQHDEEDEEDDEDDDDDNNNQNENNQNSADLEECTNTKDSLKDLQIKKETQSPLLLDSISQQNAIAAAAAAAAACNNDPNKFQELLMERTKALVAAEALKNTEETKVVNEEPQCLDTNENVASSDTNENADVVEHVDASKVPKIEILDDDEEDEGLKSSLNTKEDAVGKTDLCSSIDLEVLNATAPAAEKCLEENEEQEDTATFKQNVERFGTLLGEELVNSYWRRGFDHTKSLYAQQSQQQQQQHLQQQQQQQQQQQRSLQQQQQQQHHHQHHQHLMMQQANVHHHHHHQQPIQHHHQQPTQTHLSQPPCGPSSTTLLSQLVNSTFSTPNSNTPTQSSLRSADGFTHSQPASHLHHQHHHLHHQMPAHLVEHHDKLSLNHHDSSASSASTPNLQEQRNNEDHHSLSLNGSLKNLEDNNNSLCATPTSHHMAAGHPSHLPHGFLPGLPFQFQERGHFRFADDLQLPPGTSMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRIFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWSCDDNAVMLLKSLIPKKDSGLPPYGSGGRDDSMSDERIAHILNEASSLIKSSGPTSMHQQHEHQRRASTIPEDSRSNDDSKSPHPSCSSPFFKEHHSKSQGETIMPGQGHMRPDDVNPEKMARLYQELMARAPREAFPGFLLNPFFSGGLPSAAGMGANAFPGLAADENMRLAFEREMSKLQQQQQHAAQPPNFANFSSLMALQQQMLNGAQDLTLSTDDKPKDINKVNGQRSSFEGASQISHTNNGQTTPNAKDSSASEVERLYPGLVKSEQGSKTPAPLVSSNASTTNTNSAAPSPLSNSILPPAMTPNEEFSATASPLQRMASITNSLITQPPLPPHHNTPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGNYSGSPQIPQGLASKMQASLPMQKMMSELKLQEPAHIMQQMQAAAVMSAAMQQHQQQQAAAAQQSQQQAAQAAVQAAQAAAAAQAAQQHHQSMLLTSPGLPPQHTIALPTANSQPTSGNSTPAGPTPDKKPMMMPIHSPHQGNAMRNMHQHMSPTVYEMAALTQDLDTQVITTKIKEALLTNNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQVLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSGAPPNKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITNWFHNHRMRLKQQVPHGPPGQETNIPTRENTNSTPFDPVQFRILLQQRLLELHKERMGLGCNTPLPYPPYFAAAALLGRSLAGMPGTNAQTALPTNEAELRALNQAFREQMSGLDLSMSSLKRERTDDFEDDMDESHLSENENDDLDDEDKTSEYRNSALTSMNAQNFLNNMRLNRRKPAAPQWVNPAVPNVNEADRIINGVCVMQGEGEGPQQNSAEDELNKALDHEDNNMMEAPHQSVMEPEVLIKQEKEDCESDSEKTNAEDATAMSEERIKVLQEDKLRMVRVNRLSNEDETLAAGNSAPVPAWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01109239;
90% Identity
iTF_00899423;
80% Identity
iTF_00899423;