Basic Information

Insect: Linepithema humile
Gene Symbol: stc
Assembly: GCA_000217595.1
Location: NW:17025-25902[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.5 8.2e+03 -3.7 1.1 15 19 472 476 471 476 0.82

2 13 0.18 1e+03 -0.8 0.4 4 10 505 511 504 511 0.95

3 13 5.3e-06 0.029 13.7 13.0 3 18 521 536 520 537 0.92

4 13 9.7e-09 5.3e-05 22.5 15.6 1 18 572 589 572 590 0.97

5 13 8.5e-08 0.00047 19.4 9.3 1 18 628 645 628 646 0.99

6 13 3.5e-05 0.19 11.1 12.0 4 18 693 707 686 708 0.86

7 13 2 1.1e+04 -4.6 1.6 5 10 737 742 737 742 0.90

8 13 0.0082 45 3.5 11.3 1 11 748 758 748 770 0.88

9 13 2.8e-09 1.5e-05 24.2 9.9 1 19 775 793 775 793 0.98

10 13 0.3 1.6e+03 -1.5 0.4 5 10 821 826 819 827 0.93

11 13 2 1.1e+04 -7.1 10.2 10 19 840 850 829 850 0.80

12 13 7.9e-05 0.43 10.0 7.9 1 16 886 901 886 912 0.82

13 13 0.00014 0.74 9.2 14.3 1 19 918 937 918 937 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.5	8.2e+03	-3.7	1.1	15	19	472	476	471	476	0.82
2	13	0.18	1e+03	-0.8	0.4	4	10	505	511	504	511	0.95
3	13	5.3e-06	0.029	13.7	13.0	3	18	521	536	520	537	0.92
4	13	9.7e-09	5.3e-05	22.5	15.6	1	18	572	589	572	590	0.97
5	13	8.5e-08	0.00047	19.4	9.3	1	18	628	645	628	646	0.99
6	13	3.5e-05	0.19	11.1	12.0	4	18	693	707	686	708	0.86
7	13	2	1.1e+04	-4.6	1.6	5	10	737	742	737	742	0.90
8	13	0.0082	45	3.5	11.3	1	11	748	758	748	770	0.88
9	13	2.8e-09	1.5e-05	24.2	9.9	1	19	775	793	775	793	0.98
10	13	0.3	1.6e+03	-1.5	0.4	5	10	821	826	819	827	0.93
11	13	2	1.1e+04	-7.1	10.2	10	19	840	850	829	850	0.80
12	13	7.9e-05	0.43	10.0	7.9	1	16	886	901	886	912	0.82
13	13	0.00014	0.74	9.2	14.3	1	19	918	937	918	937	0.97

Sequence Information

Coding Sequence: ATGGCTACTTGGGATGGTTCGTATTCGGAAGATCCGAATTACTTTGCGTACTCCGATCAAAACGCACCCAATGTCGTTGGAAGAAATTGGCCATACCTTGGTAGGAACGTCACGCATCCGCAAGAAGTTTCCGTAGAAAACTACTATTCAGGAACTAGTGGACAACACATTTACGAGCAAAACAGATCTGCTGCTGTTTTACATCAGGTCGGCACTCAGCAATTGCCAATGACATCAAATATGTTGCCTTTGGAGAATACTTATCAGGAACAAATGCTGCCAAATACCACGCTCATGGACAATGTCCAAGTACCAAATGGTTTGCAAGATTCCATTAGTAATATTTCGCATAACATGCCGCCTTTTTTTCACTACAATTACAAGTCGAGGTACAAGACTAACAGGGCGACTGGTAAGCATTTGCAATCATCAAAAAGCAATAGCACTCACTCCATTGTAgtacaaaattcaaatttgcaTCCTACAGCTAGTGAGTTTGTGCCAAACaatgttaaatgtaaaaaggaTAGGttcaataaaaagaatgatCAAAATGGTGCAATGGAAAGAAATAGCTGTAATGCTGATGTGGAAAGTTTCAGATCAAAATCATTTATGAATACATCTTTGCCGAACAATAGATATAGGAATGAAAGGCACTATGATAACAGAAAAGGTGTGAATTATAAGCAGAAAAACTCGCAAAACGCACAAGTGTCATCCAGCTTTAGCTACAGAGATactcataaaatgtataatgcaagaaataataaatttcaaaacggCAAATATTACAATAGAAAACATCAATCAAATGTATCTTCTGCAGAAGAACATgcttttggaaaaaattttctgtcTACAAATGAACCTTCTCCTTCATCAAAATCTAATAATCTTGAGATTGAAAAGGATGACTTGAGCGCAACAGTTGGCACAAGAAGAGAGGAGAAAACACGTGAAGAAAATTCACAGAATGTGCTTTCGACGAATGATACACAGCGAAacagcaataaatttaatcgattcACTAGtcatcataaatttaattcggGTGATGTACAATCCGAACCTGGTgccaaatataaaacaatgaggtatatgcaaaaaagaaataatgaagcAACAAATCACAAGGAGAAAAGATTGGAAAATTGGAgagataaaatagataataccAAAGCATATGTACAAGAGAAACGTTTGAAAAAGAAAGCAGAATTTGATAACGATGCCAGTCAAAGAGAAAGATTAACCGAGCAGTTGAATAGAGGAACATTGGAATGTTTAGTTTGTTACGAGCATATCAGGCAAAGCGAACACGTTTGGTCTTGTACTAATTGTTATTATGTATTACACTTGAAATGCATCAAAAGATGGGCAAAATCATCACAAAATGaTAACAGTTGGAAATGTCCGGCTTGCCGAGCTATCAGTTTTCTCGTACCAGAAGATTACTTCTGTTTCtgcggaaagaaaaagatgccAGAATGGAATCGTAGGGATGTCCCGCATTCATGCGGCGAAATTTGCGCTCGGAATTTGTCCAAGAATAATTGCACGCACAAATGTACTTTGCTCTGCCACCCTGGCTCTTGTCCGCAATGCGCAGCGATGGTGACCAAGTACTGCGGCTGTGGAAAAACTTCGAGGATGCTATTATGCAGTGCTGACCAATTGTTGTGCGAATCAATATGTGGAAAGGATTTGCCATGTGGCAAGCACACTTGTCAGAGAAAGTGCCATCAAGGAGAATGCGGATCTTGCGACAAGACTATGCaacaaaCCTGTTTCTGCGGTGAGAACACTCGGGAGGTACTTTGTCGAGCTAATGTCTCAAAAATGTATTCTTGTAACAATGtctgtaacaaaatattggaCTGCGGCAAGCATTATTGTCAGAAAATCTGTCATCTAGAGCCTTGCGAGCCTTGTTTCTTAACGCCAGAGAGAGTTACGATGTGCTGTTGCGGTCAAACACCGTTAGccgaaaagagagaaagttgTTTGGATCCCGTGCCGATCTGTGATAAGATCTGCTCAAAGCGCCTAAAATGCGGCCAGCCTAGTAATCCGCATATTTGTAAAGCGCCATGCCATGCAGGAGAATGTCCGGCTTGTGATTTAAGTACCGATGTCAAGTGTCGATGCGGCAACATGGATCGCGAGATTACTTGCAAGGACTTGAAGAGTAAGGCCGATGACGCGCGTTGCGAGAAGCgctgcaagaaaaaaagatcttGCGGTAAGCATAATTGCAATCAGCTGTGTTGCATCGATATTGAGCACATTTGCCCATTACCATGTTCCAAGACCCTGAGCTGTGGTCGACACAAGTGTCAGGACAGATGTCATATGGGAAGATGTTTGCCTTGTTGGCAGAGCAGCTTTGACGAATTATACTGCGAATGCGGCGCAGAGGTAATTTATCCACCGGTGCCATGTGGCACAAGAAGGCCCACTTGCAATCGACCGTGTTCGCGCCAGCATTCGTGCGATCACGAGATACTACACAACTGTCACAGCGAGTCTACATGTCCACCTTGCAGCGTGTTGACACAAAGATGGTGTCACGGTAAACATGAGCTTAGAAAGGCCGTACCATGTCACGTGAAAGAGATCTCGTGCGGTCTGCCGTGTAACAAACCGCTGATATGCGAACGGCATAAATGCATCGCGATGTGTCACGCAGGACTCTGCGAAAAACCTGGACAACAATGCATACAACCTTGCACGATAATGAGGGAGATGTGCGGGCATATTTGTGGCGCTTCGTGTCATGAAGGCAAGTGTCCAGATACACCTTGCAAAGAGATGGTTAAGGTTACATGCCAATGCGGACACAGAAGTATGAGTCGTGTCTGCGCCGATAACGCTCGGGAGTATCAAAGAATAGCGAGCAACATACTAGCCAGTAAGATGGCTGATATGCAACTCGGTCATTCCGTCGATTTGGAGGAAGTATTCGGGCAAGgtgcaaaaaaacaaaatcagCTGAAAACCTTGGAGTGCAATGATGAGTGTAAGATAATCGAGAGAAACAGAAAACTTGCATTGGGATTGCAAATCGTTAATCCTGACTTGAGTGGTAAGTTGATGCCCAGGTACAGCGATTACATGAAACAGTGGGCCAAAAAGGATCCACAATTTTGTCAAATGGTTCATGAAAAACTGACAGAATTAGTGCAGTTAGCAAAAATGTCTAAGCAGAGGTCTCGAAGCTATTCCTTCGAAGTCATGAATAGAGAAAAGCGTCATTTCGTACACGAATCATGCGAACACTTTGGTTGCGAAAGTCAAGCATACGACGAGGAACCAAAGAGAAACGTCGTTGCCACAGCTGTGAAAGAGAAGTGTTGGTTACCCAGTTACAGTTTACTAGAAATGGTGCAGAGGGAGAAAGGACAAAGAAAGGTACCAGGACCGGTACTTAACACTTctaaggaaaaaaattctacaaagaCTGTTCTTTCGTTACCTGTGAAACAAAGTCAACAATCGATATCGTCATCAACTGCAAGATCTTCTGACAAAGAAATCGATTACTTCGATTAtcgagaataa
Protein Sequence: MATWDGSYSEDPNYFAYSDQNAPNVVGRNWPYLGRNVTHPQEVSVENYYSGTSGQHIYEQNRSAAVLHQVGTQQLPMTSNMLPLENTYQEQMLPNTTLMDNVQVPNGLQDSISNISHNMPPFFHYNYKSRYKTNRATGKHLQSSKSNSTHSIVVQNSNLHPTASEFVPNNVKCKKDRFNKKNDQNGAMERNSCNADVESFRSKSFMNTSLPNNRYRNERHYDNRKGVNYKQKNSQNAQVSSSFSYRDTHKMYNARNNKFQNGKYYNRKHQSNVSSAEEHAFGKNFLSTNEPSPSSKSNNLEIEKDDLSATVGTRREEKTREENSQNVLSTNDTQRNSNKFNRFTSHHKFNSGDVQSEPGAKYKTMRYMQKRNNEATNHKEKRLENWRDKIDNTKAYVQEKRLKKKAEFDNDASQRERLTEQLNRGTLECLVCYEHIRQSEHVWSCTNCYYVLHLKCIKRWAKSSQNDNSWKCPACRAISFLVPEDYFCFCGKKKMPEWNRRDVPHSCGEICARNLSKNNCTHKCTLLCHPGSCPQCAAMVTKYCGCGKTSRMLLCSADQLLCESICGKDLPCGKHTCQRKCHQGECGSCDKTMQQTCFCGENTREVLCRANVSKMYSCNNVCNKILDCGKHYCQKICHLEPCEPCFLTPERVTMCCCGQTPLAEKRESCLDPVPICDKICSKRLKCGQPSNPHICKAPCHAGECPACDLSTDVKCRCGNMDREITCKDLKSKADDARCEKRCKKKRSCGKHNCNQLCCIDIEHICPLPCSKTLSCGRHKCQDRCHMGRCLPCWQSSFDELYCECGAEVIYPPVPCGTRRPTCNRPCSRQHSCDHEILHNCHSESTCPPCSVLTQRWCHGKHELRKAVPCHVKEISCGLPCNKPLICERHKCIAMCHAGLCEKPGQQCIQPCTIMREMCGHICGASCHEGKCPDTPCKEMVKVTCQCGHRSMSRVCADNAREYQRIASNILASKMADMQLGHSVDLEEVFGQGAKKQNQLKTLECNDECKIIERNRKLALGLQIVNPDLSGKLMPRYSDYMKQWAKKDPQFCQMVHEKLTELVQLAKMSKQRSRSYSFEVMNREKRHFVHESCEHFGCESQAYDEEPKRNVVATAVKEKCWLPSYSLLEMVQREKGQRKVPGPVLNTSKEKNSTKTVLSLPVKQSQQSISSSTARSSDKEIDYFDYRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -