Lhum003733.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- gatad1
- Assembly
- GCA_000217595.1
- Location
- NW:2304381-2306428[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-08 1.8e-05 23.6 5.3 1 26 9 32 9 38 0.93 2 2 0.51 8e+02 -0.9 0.3 4 9 68 73 66 76 0.83
Sequence Information
- Coding Sequence
- ATGCCACTCGGTAATAAGCCAGAATGTGTGAAGTGCGGGACTCACGAGACGCCACTATGGCACTCGACGGATGCCGGTAACCTTTGCAATACCTGCTTGGAGGATGAGCGGAATGCTGAAGCAACTGCATCCTCCAAGGCAGACGAGGAAGATAAGAATGGTTCGCTGAGGCCGAGGAGAAGCACTAGAATCACTAGATATTGTAATACAAAAACTACAGCGCCACACAAAATTGTGCCCAAAGGCAAGGGTCgcagaaatttgtttaaaaaaacgCCAGTCAAGGCGCCTACTGCTACTGCAACTCCAGTTACTAGtaactttgtattttataaggGCACATATTTTCAAGTTGGAGATGTAGTCTCTATGCAAGATGTAGATGGTGCTATTTATTACGCTCAGATACGCGGTTTACTGACTGATCAATATTGTGAAAAGAGTGCAGCTGTAACCTGGCTATTGCCTACTGCAGCGAGccCCCCACCGGAAGAAGGTTTCATTCCTGAAACATACATAATTGGACCGGAAGAAGATTTACCGCGCAAATTGGAGTGTATGGAATTTATAATGCACGCTCCATCAGattattttaagttaaaaaacaCACCATATCCCCCTTCGCTCACAGAAAAAGGAGTTGGCTATATATGGACTACTCTTAGAAATGAAATGGCCTTGTCTAAAAAATAG
- Protein Sequence
- MPLGNKPECVKCGTHETPLWHSTDAGNLCNTCLEDERNAEATASSKADEEDKNGSLRPRRSTRITRYCNTKTTAPHKIVPKGKGRRNLFKKTPVKAPTATATPVTSNFVFYKGTYFQVGDVVSMQDVDGAIYYAQIRGLLTDQYCEKSAAVTWLLPTAASPPPEEGFIPETYIIGPEEDLPRKLECMEFIMHAPSDYFKLKNTPYPPSLTEKGVGYIWTTLRNEMALSKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00770044;
- 90% Identity
- iTF_00385957;
- 80% Identity
- -