Lhum010313.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- pnr
- Assembly
- GCA_000217595.1
- Location
- NW:82590-95019[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.66 1e+03 -1.3 0.2 2 12 232 247 232 253 0.77 2 2 9.6e-17 1.5e-13 49.4 5.1 1 35 421 454 421 455 0.98
Sequence Information
- Coding Sequence
- ATGTTCGATGTACCGCGGAAGTTCTACGAGCTGTGTCGCCTTTGTTTATCCCCGGATGGTGTCAAGTTGTCCATATTCGAGGAGGAGGATGGAACCCAGCGGAACTTTGCCGAAAGGATATTGGCGTGCCTGTCAATCACGGTAAAAGATGGTGATTCCTTACCAGGAATTATCTGCCATCGGTGTGTATATAAGTTGGAAGTGCTGCACAACTTTCGCGAAGCGTCGCAAAAGTCTGACATCATACTCAAACAGTACCTGGATTATACCAAGCAACTTTCGTCTTCAGACGAGCAGAAAGAGTCTTTCTCCACTGCCAAAGTAGCGGGCGAAAGCCCTCTGCAATCGTTCCTCGAGTTGAACAGACTCTTGTTCAACGAGGAGCCTAACTCCGAGCCGGCCAGCATTAATCAAAGTATAATACCTCAAACTCAAAGGCATCATCTAGAGTTGCAAGACAGCAATATGCCAGAGCATGATAATATTAAGTGTGAGCCAGAGGATGACACGTGCTCCAACAGTTCTGATCCTGAACGATTAGAGATTGAGGATTGCGAGGAGCAGGAGATGGAAGGCGAAGAAAATGGCTACGATATGACCGTCAATAAGAGAATGAAATTAGAGAGCAACTATGATGGCTCCGAGTCCAACACAGCGAATTGTAGCCCAGTTAACAGAATGGATACTCCAGAGAGCAATTGCTCCGACACCAACATCGATCAGGAGACAACCAAGCTGTGGCAAGCCCTAGCCAGCAACAGAAACTTGGAAATTACACGAACGAACGGTGATAAGCACAACAATGGATACACCGGTGAGGCGACCAATTTGCTACGCTCTTTGATCAGCAACAGGCAAATCGGTATCACCGCCGTCGATTCGGGCAAGATATCTCCGCAAATGAGATTCTATAGGGACACCCAGGGAACGACCATGGAACGTATGCAGACCGATTTTCCTATGCTTGGTAGTCGAACTTCAGAAAATAAGAGTGCCTCGATAGACAGCAATCCGTCTAGCCCCGCCAGCGTCGGTCGCAAGGAGACAACGGGAACGACGAAAGGTCGCAGAAAGCAGAGTTATCCCAGTAAAGCACCGGTGAGTCCGGACGttgttgcaaattttcaacatGAACACAATAATGAGGAAAAGGCGCAAGATTTTACAACGTGGTCGAACAAGATGAAGCATAAGATGGATGATCAAAAGCAACAGTTCGACCAGCAAAGTAGCAACGCTGCGAAAAAAGTCGACATGTCTTGTACAAATTGCGGCACCATGACAACAACTATTTGGAGAAGAAACATGAAGGGCGAGATGGTATGCAATGCCTGTGGGTTGTACTACAAGCTTCATGGTGTTAATCGTCCGGTCACCATGCGGAGGGACACCATACATACGCGCAGACGTAGACCCAAAGGCGAAAAGCCAATGAGACACAGAAaaaaaagcGACGCGGTTTTAGTATCTCCATCATCAGCAGAACAATTGGATGCTGAAAGTGCGGACATGGTGGCAGCTCTTCGACGACAGATCCAGCCTTTCATGGACCACCAGATGATGGTGTCGCCTACGCGTATACCCAGAGGCCATCCGCCTCCACCTGCGGCTTTCTCATTACCTTTGCCTAGTTACATAATTCACCAACATGTGAAACCCGAGGAACGCATGCAGCGGCACTTGTCCGTGGACACTGAAGAAGCCGACGAAGGCGACGAGGAAAACGTCTCCGACGTTCCCTTGAATCTGGTGGCGACTTCGCTCTCGGAATAG
- Protein Sequence
- MFDVPRKFYELCRLCLSPDGVKLSIFEEEDGTQRNFAERILACLSITVKDGDSLPGIICHRCVYKLEVLHNFREASQKSDIILKQYLDYTKQLSSSDEQKESFSTAKVAGESPLQSFLELNRLLFNEEPNSEPASINQSIIPQTQRHHLELQDSNMPEHDNIKCEPEDDTCSNSSDPERLEIEDCEEQEMEGEENGYDMTVNKRMKLESNYDGSESNTANCSPVNRMDTPESNCSDTNIDQETTKLWQALASNRNLEITRTNGDKHNNGYTGEATNLLRSLISNRQIGITAVDSGKISPQMRFYRDTQGTTMERMQTDFPMLGSRTSENKSASIDSNPSSPASVGRKETTGTTKGRRKQSYPSKAPVSPDVVANFQHEHNNEEKAQDFTTWSNKMKHKMDDQKQQFDQQSSNAAKKVDMSCTNCGTMTTTIWRRNMKGEMVCNACGLYYKLHGVNRPVTMRRDTIHTRRRRPKGEKPMRHRKKSDAVLVSPSSAEQLDAESADMVAALRRQIQPFMDHQMMVSPTRIPRGHPPPPAAFSLPLPSYIIHQHVKPEERMQRHLSVDTEEADEGDEENVSDVPLNLVATSLSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126375;
- 90% Identity
- -
- 80% Identity
- -