Lhum001201.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- -
- Assembly
- GCA_000217595.1
- Location
- NW:3521279-3584581[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0066 0.41 10.5 0.5 2 21 522 541 521 545 0.89 2 11 0.07 4.3 7.3 2.8 2 23 560 582 559 582 0.93 3 11 0.28 18 5.4 1.6 1 23 601 625 601 625 0.92 4 11 0.011 0.71 9.8 0.3 2 23 645 667 645 667 0.94 5 11 0.00055 0.035 13.9 0.3 1 23 755 776 755 776 0.93 6 11 3.5e-05 0.0022 17.7 0.1 1 21 782 802 782 803 0.95 7 11 6.5e-06 0.00041 20.0 1.4 1 23 821 843 821 843 0.98 8 11 0.00021 0.013 15.2 0.1 1 23 848 873 848 873 0.95 9 11 1.8e-05 0.0011 18.6 1.9 1 23 880 902 880 902 0.99 10 11 0.87 55 3.8 8.4 1 23 912 936 912 936 0.94 11 11 0.03 1.9 8.4 1.8 1 20 942 961 942 963 0.95
Sequence Information
- Coding Sequence
- ATGGAGGGctacgaagacgacgacgacactCACTTTTGCATCAAGTGTAATCTGACAGTACACGGCCTCGACAATTATGTGCGGCATCGTCGGTCAGGCTGCCGACCGCCTGACGATAAAAACGAGACCGTCCACGAGTCGCCCGCGACGCCGACGACAGTGTCGTATCCCGAAATTCTCAATGCGGATATGTTCTTCAGCTCGTTGGAGCTGCAGAGCAGCGCGAAGACAAATCCTCGACGGGCGCCGACTTTATTGGAAAGCGGTAGAAAATTCAAGAAGGAGGAAGTAGAGAGTAGAAAAAAAGATCAGAAAAGTCAGGTGGACGAGCCCGGTGCGAAAGATAAACTTCACAGCATGCTACCCGCCGTCAGCGATCTGGATGATCCAACCGATCCCCTATGTATCCAACCCCTCAAGCAAACCAATCGAAAGAGACAAGAGAATCCGCAGCGAATGGAGCAGAGCTGGTTGGAAGACACCATTCTCGCCGACCTCGCGTTGGAAAATAGCGAGAATAAAGAGCTGGCGCGATACGACTTCGAGTACCACCAGGACGATGATTCCGAGGACGATATGTTGGACGACGATTTGGGGGAAGATGACTCCTATTTGGATTCTGACGACGGCGAACATCGTGAGCGTCCGCCGCGCGATCATACCGGCGGCAAATGGAAGCCTGAGCTCGACGATTTGCCGCAGGACATGCCACATATGCATGAGGAGGATGTGGATCCCGAGGACGATCATCAGGAACATCCACCGCCGACGTACACCGGCGGCAAATGGAAACCCACGGAGGCGTCGCAAAAGGTCGAGGAATACGAGAGCAAGGATGCATCCGGGCAGCCGCCACCAGGACATACGCGAGGGAAATGGGTACCGGGTGCACGAACGGATATCGAATCGGGATATTGGTGCAATCCTTGCGGCAGGAAGCTCGCCTCACGATTGGTCTACAACAGGCATCTGCTCTCTGATTTGCACGCCAGGAGGAGCATTAGAGAGATCGACGGTGATCTCCATTTACCATGTGGAATGAATCTGCGCGCGAGTAGGAGAGTATCTGCTCGTAGACAAGCTTCATTCGTAACGagaaaaatagaaGAGCCCgagcaaaagaaaattaaaaaaggcGTGCgtcgaagagaaaaagaaattatctcATGTGAGATGTGCCACGCGCGTGTGAAAAGGCCTCAAATGGGTAAACATTTGCTGTCCCATTACCATTGCCGTGTGGCAGGAGTGAATCCTAGCAGTCCGAGCGCGCGACGTTTCCTGCTGGAGAACATGGCGAACGTGGTGCGACAGTGCCCTTTCCAGTGCGCTCCTTGTCGTTTCTACTGCAACACCGAGGAAACATTTTTGCTTCATTGGCGTTCTGAACTTCATGTCAAGACCTTAGGACAGATCAGCGGTAGTTGTAGATGCACGCCGTGTGATTTCTGGTGCGAGGACAACGGGACAATGGAGTCGCACCTTATGAGTGCAAGTCATCGTGATGTGGTATCGATGATGAACGGCTCCGTGCCGGTGGTAATTAGTCGTCAACGAGCGTTACCCTGCGGCAGTTGCGATCGACAATTTCGATACAATTTCCAACTGCGGTCGCATGCTAAGGAAACCGGCCACGACGCGAGTTACACTGCGTCGGACGAGTATCAGCAGCGTATCAAGTGCAACCTGTGCCCTTGCGTCGTCCGATCCCTGGTTACGCTTCAACGCCACAAATTGCTCTGTCACGTCGctaagaataaagaaaaggaCGAAGTCGCGGCGGCCGCGCGACTGGCGCCATACTTCTGCTCGTTTTGCTCGATGAATTTTACCACCACCCAGGAAGCAGTTCTGCATCGGAGAACCTCCAGTCATAAGGAAGCCGTAAAAGCGCACAAGAGTCGGGAAGGATTATCGAAGACCGTGGTGCGGGAGTGTCCTCACTGCGACGAGAAGCTGCCGAATCTCGCGGCATACAAGACTCACCTTCTCAATTCTCATCCGAAACTTTGTCACAGATGTCCGTGTTGCGGTCTGCTTCTTGCCCTGTCGCAGGACGTCACCAAACATACGCGAGAAGGTAACTGCACCAAGGACGATAGCTCGAATGCGGGTGAAGGGGACGTGAAGAAAGAATGGAAATGCCAGGATTGCATCTTCTCGACGGACTCTCAAGCTGAATTCATCTTTCACGGAGCCCTCCACACCGGTGCCGTGCAAGTTGACGAAGAAGTTCCGAGCTCCAGCAAGTTGTTGCCGAAGTACCGGTGTCCGATCTGTAAgaagatttttgcaaaaccTTCGCTGCGGAATCATATTATACAGCATACTGGAGAAAAACCCTTTCCCTGCGCGAAGTGTTCCATCTCATTCTCGAGGCGATCGGAGCTCAGCGTTCATCAAAGGATATGCGGCACCTTCTCGTCGGAGTGCCTGGACACAAGAGGTCGTCGGCGAAGATTTATTTGCTCGGAGTGCAAGGAAGGCTTCTATACCAAatattccCTTCAACAGCACATGCTGCGACACATTGGCAAGAAGTACAGGTGTGGGCTTCCGGGATGCCCCACAGTTCTTCGCACTCCATCCGAGCTCCAGAGGCACCGAAAGTTGGTCCACGATAGCGTTGGTAAACAATATCAATGTCCTAATTGCTCGTACGCCACTAAAACGCAGCCGCAGCTGAGAAGGCATAGGAAGAAGCACGAGGGTACCACAAACGAGGAGAAAGTCCACTGCTGCAATTATAAGggttgcaattttaaaacgaAAATTAGTTATCATCTGCAAAGGCACTTACGGCTGCATACAGGCTCTAAACCGTATAAGTGTCGACATTGTTCCTATGCGTGCAACGCTTTGGAAAATCTTCGGAAACACGTAGTATCCACGAGTTTACATCCAGGTAAGACAATTTATGAATGTGATTTTTGCACGGAGGAAATGGGAAACGTATTCTGCACGAACTTCTCCAAAGAACTTCGTGCTCATCTGGTGGAAGCTCACACCAAGGACTTTCCAACACCAAACGAGGCGAATGATTACGTCCTCAAAATTTTTTCCGattttatttggACGCGATGTAAGGAACTGCCGGTAACATCAAGGATACGCACTCGCTCATAA
- Protein Sequence
- MEGYEDDDDTHFCIKCNLTVHGLDNYVRHRRSGCRPPDDKNETVHESPATPTTVSYPEILNADMFFSSLELQSSAKTNPRRAPTLLESGRKFKKEEVESRKKDQKSQVDEPGAKDKLHSMLPAVSDLDDPTDPLCIQPLKQTNRKRQENPQRMEQSWLEDTILADLALENSENKELARYDFEYHQDDDSEDDMLDDDLGEDDSYLDSDDGEHRERPPRDHTGGKWKPELDDLPQDMPHMHEEDVDPEDDHQEHPPPTYTGGKWKPTEASQKVEEYESKDASGQPPPGHTRGKWVPGARTDIESGYWCNPCGRKLASRLVYNRHLLSDLHARRSIREIDGDLHLPCGMNLRASRRVSARRQASFVTRKIEEPEQKKIKKGVRRREKEIISCEMCHARVKRPQMGKHLLSHYHCRVAGVNPSSPSARRFLLENMANVVRQCPFQCAPCRFYCNTEETFLLHWRSELHVKTLGQISGSCRCTPCDFWCEDNGTMESHLMSASHRDVVSMMNGSVPVVISRQRALPCGSCDRQFRYNFQLRSHAKETGHDASYTASDEYQQRIKCNLCPCVVRSLVTLQRHKLLCHVAKNKEKDEVAAAARLAPYFCSFCSMNFTTTQEAVLHRRTSSHKEAVKAHKSREGLSKTVVRECPHCDEKLPNLAAYKTHLLNSHPKLCHRCPCCGLLLALSQDVTKHTREGNCTKDDSSNAGEGDVKKEWKCQDCIFSTDSQAEFIFHGALHTGAVQVDEEVPSSSKLLPKYRCPICKKIFAKPSLRNHIIQHTGEKPFPCAKCSISFSRRSELSVHQRICGTFSSECLDTRGRRRRFICSECKEGFYTKYSLQQHMLRHIGKKYRCGLPGCPTVLRTPSELQRHRKLVHDSVGKQYQCPNCSYATKTQPQLRRHRKKHEGTTNEEKVHCCNYKGCNFKTKISYHLQRHLRLHTGSKPYKCRHCSYACNALENLRKHVVSTSLHPGKTIYECDFCTEEMGNVFCTNFSKELRAHLVEAHTKDFPTPNEANDYVLKIFSDFIWTRCKELPVTSRIRTRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00280316;
- 90% Identity
- -
- 80% Identity
- -