Basic Information

Insect: Linepithema humile
Gene Symbol: -
Assembly: GCA_000217595.1
Location: NW:1367105-1391588[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.7 2.3e+02 1.9 2.0 2 15 176 189 175 195 0.80

2 18 0.00054 0.034 13.9 5.6 1 23 202 225 202 225 0.98

3 18 0.012 0.73 9.7 2.5 2 23 240 262 239 262 0.91

4 18 0.003 0.19 11.6 4.2 1 23 615 638 615 638 0.94

5 18 0.37 23 5.0 1.0 5 23 645 664 643 664 0.92

6 18 1.1 71 3.5 0.2 2 23 670 691 669 691 0.96

7 18 0.024 1.5 8.7 2.9 5 22 881 898 879 898 0.92

8 18 0.00032 0.02 14.7 0.2 3 23 906 927 904 927 0.92

9 18 0.55 34 4.5 4.5 1 23 937 960 937 960 0.93

10 18 0.43 27 4.8 0.4 2 21 986 1005 985 1006 0.94

11 18 0.91 57 3.8 4.8 1 23 1013 1036 1013 1036 0.95

12 18 0.0087 0.54 10.1 5.2 1 23 1047 1070 1047 1070 0.94

13 18 0.058 3.6 7.5 1.0 1 20 1116 1135 1116 1137 0.94

14 18 0.00087 0.055 13.3 3.4 1 23 1144 1167 1144 1167 0.97

15 18 6.9 4.3e+02 1.0 2.5 1 23 1176 1199 1176 1199 0.87

16 18 0.0065 0.41 10.5 0.1 1 23 1218 1241 1218 1241 0.96

17 18 0.78 48 4.0 0.3 1 23 1521 1544 1521 1544 0.96

18 18 0.085 5.3 7.0 0.4 2 23 1568 1590 1567 1590 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.7	2.3e+02	1.9	2.0	2	15	176	189	175	195	0.80
2	18	0.00054	0.034	13.9	5.6	1	23	202	225	202	225	0.98
3	18	0.012	0.73	9.7	2.5	2	23	240	262	239	262	0.91
4	18	0.003	0.19	11.6	4.2	1	23	615	638	615	638	0.94
5	18	0.37	23	5.0	1.0	5	23	645	664	643	664	0.92
6	18	1.1	71	3.5	0.2	2	23	670	691	669	691	0.96
7	18	0.024	1.5	8.7	2.9	5	22	881	898	879	898	0.92
8	18	0.00032	0.02	14.7	0.2	3	23	906	927	904	927	0.92
9	18	0.55	34	4.5	4.5	1	23	937	960	937	960	0.93
10	18	0.43	27	4.8	0.4	2	21	986	1005	985	1006	0.94
11	18	0.91	57	3.8	4.8	1	23	1013	1036	1013	1036	0.95
12	18	0.0087	0.54	10.1	5.2	1	23	1047	1070	1047	1070	0.94
13	18	0.058	3.6	7.5	1.0	1	20	1116	1135	1116	1137	0.94
14	18	0.00087	0.055	13.3	3.4	1	23	1144	1167	1144	1167	0.97
15	18	6.9	4.3e+02	1.0	2.5	1	23	1176	1199	1176	1199	0.87
16	18	0.0065	0.41	10.5	0.1	1	23	1218	1241	1218	1241	0.96
17	18	0.78	48	4.0	0.3	1	23	1521	1544	1521	1544	0.96
18	18	0.085	5.3	7.0	0.4	2	23	1568	1590	1567	1590	0.95

Sequence Information

Coding Sequence: ATGGCTAGAGTTCTATTATACGAGAGACATGTAGATGCTATATGCATTAATACACATGCAGATCTAACAtgTGATGGGAAGATTCAAAATGGAGTGAAGATCAAAGAGGAGATTGAGGAAGATCCTATTGATGCGACATTGAACATTAATACGACTGAAAATTGTATGTTAGttagaaattgttttaatttgattggTTCCAAATCATCACCAtccgaaaataatatttcacaaaaaaataatataaacaataaagaaaatgaactTACAGCTAATAGTCATTCTGCGTATTCAAGcgacgtaaataaaattattaacttaaaaCGTAAAATTGTGAACACCACAGAAGAATTGGTACATGATGCATCATCACAGTCCAAGAAGAAACGACAATCTtccaatgaaatttttaataggaaTACATCCAATGCTAAAAGTACGTCCTATGGAACAACAATCGACAGATTTagtgaaaaaagaaagctaCAAAAAGtcgcggaaaaaaagaaaaaactcaATCACCTAGAATGTGACATATGCTTCAGAAAGTTTAATTCTAGTTTTGCTTGTGAACAACATAAGtactattacaattttgcagtttttaaaTGCAGTGTTTGCAACAAACAGTATAAAACACACGACAAGTTACATGAGCATATTATGACATCTCATGGAAAAATTGCACGTGGCAGCAATTGCAAGCCTTCATCTTCATATTGTAACTTTTGTGGTCGTAGTTTTAACGAAAAGCTGTTGTTGCAATCTCATTTGTTTCACATGCATAATGAGTTAATATATTCCAGTAATAGAGTTAAACAGCTGAATTTGGGATCCaagaattatgtaaatacACCTCAAGAAAGTACCACATTGAAGATTGATGCACATGAAGAACAACGTTCAAATAATCCCGTTAAAGAACTAAACACTAGACTTAGAAACAATGACCTGATAAAAACTAAGGGATCAACAACAGAAGAATCATCTAGTCACAAAATGTTATCTACGAAAAGATTACGGCAACCTACAATACAAGAATATCTTGAACTTTACAAGAACAAATGCGATAAGCACAgtccaaataaattaaacataaaaaatggtTCGTCTACGTTTGCTTTACATCGTGATagacaagtaaaaaaaagttcaaaCTCTAGATCgacaaaagatattaaagttGAGCTTTTATCTACAAAATCAAGTAACAGCTCGAAACGAATGACACACTTTACTTCGGAACAAAATGAAAAGGACGACGTATCTCTCGCCAAGAAgccatttgtaaaaatacatgcGGATGTTGAAATGATGAAAACTTTTTTGGACAATCTTCCAGACACAGCTGCTAAagataatatgaataatgacgatacaaataaatcaattttatcttatcgtGAACTGCCCTATAGTTTACGATCTTCGAGAGTTATTccttttatacaaataaatttacattcaaGAAGTAAAAGTAAAGATGTATCCAAGACCCAATCTAATGCAGGACGCAACATTGAAACGAAACAGATTGTGACTGATCTAGATTTTTGGAAAACTAATATGATTCGTTTTAAATGCAAGGATTGTATAATTCCTTTGATCAGATGCGACGAAAATCCCCAAAATAATCAGATTTCTACAAATAGTGccacatttaaaacaaatgctTCTCTCACTGTTCAACGCAACTCAACGTCatttcgagaaaataatatacaaaataaaacggTGCTTAAAGAATTAGAAGTTTCTCTGGAACGTTTGGCAATTTTTCCAGCTGTAGATATCACAAAAGAAGAGGCAATACTGGATGCCAAGAAATCTAATGGTGActgttttttgtgtaaaatatgtaataagagTTTCTCTTCAAAATTGGATAAACAGATGCATATTAAGTCGTGTCATGTAGCATATATGTCAAGCATATGTAATGCACGATATAAACGGAAACGTAAACTGTGTGACCATTATTTGCAAGAACATTTGTTTAAACTAAATCAATGTTgcatatgttatataatattacccAATTTTATAGCGTTAGAACAACATTTAAATGttcattgtataaaatatattcaaagaaAGAATGATCAGCACCCAATAGATAAAGAGATAAACTGCAAGAGGAATAAAGAAGTTAATAAGTTGCATCATAAATACTCTCATTGTAAGGAATCCTCGCTGTCAACTTTGATTTCACATGAAAATCATTGCGTAGTACAAAAGGAAGATGAAGAAGATCGAAATAATTCGTTGAAAGAGACAAGTACATCCGAAAATCTTAAGTTCTCGGATATTGTTCTTAAAGAGCATCATAACAAGAACGCTGATAAAATTTCAGAAGAACAGAAAGTTGCATATGAGAAGCCTCATTCTGCTTTATGTGAAAATACGAATAATGATTCTACAGAAAAGTCAAATGAGAATCAGATGTCGgtaattgatgaaaattctGTTGTTGCAAATGATTTGATAGTTACAGAAGGGATTGAAACTGCTAACGAATCACAAACCTCCGAAAAGCTTCCAGAGAATAATTTTCCAGAGAATTCTACAATTAATGATCAGGATATTGTAAACGCACAACAAGATGTTGTTGAATCAGACACTAAAATTGCgctatgtattatatgtgGAAAGCAATTTCATAGTCACGCGAAATTGCAACACCACATGCGCAGTTTTTGCAATATCACCGATATTTGTCCGATATGTAACACTGGATTCAGTTCTAAACGTTTTCTACGAACGCATATTACGGCGGCGCATGTGCCACAATTTTCAAAGAGCTACACTTTCCATTGCATGTTTTGCAACCAAGGCTTTTTTAAGAAAGTTGAACTTCGATCTCATGTATTACATCTACATGGTCAAAAAATGCTTAACAGTCTTATGAACAATTCTCAACCAAATCAAGAGGAatctgataaattaaataccaCGACATGCACCGTGTGTTATTTGGTATATGAAACACATGATCGTTATACGGAACACATGATGTATTATTACAAGAATCATATATTCACATGCTCGCTCTGTAAGCAAACCTTTCAAGGTATGTACTTGTTTCATAATCATTACAAACTTACACATTACTCAGAGGATATACGTAAATCCTACACTTATATCTGCGAAATATGCAATGAAGGATTCAAGCATGAGtcacatttttattcgcaCAAGATGCATGTTCATTTGAATGAAGAATCTTCGACTGAGGTTGcaaaaagatttgaaaaaagaaatccaTTTGATCGCAAATCCGAGATCCGACTGCAAAAACcagatttttttacacacttacaaaaacaaattgaacAGTCGTCTGAGTACACTTGTCAGATTTGTCAGACGAAGTGTGCaactgttaattatttaaagacaCACAAAGCAATTTATTCTAATGATGGCCATTTTCAATGTAACAACTGCAGCAGGCGTTGCAGAACATCTACTCTACTTGAggaacatataaaattaactcaTACCTGTCGTGATATTTACAATGGACATGTGTGTGGTACTTGTGGTGAAGTTTTGGAAACAGCTATATCGTTGAAATGTcacgaaaaacattttcattcaAACAATGTCACCAACGCAGATATATCTAATTTACAATTAGTCGGAGATAGCTATGATTGCTTATTCTGCGATATGGATTTCTCTTCTGCCAGTGCTGTTACAATGCACATTATTAGGGTGCATATTAATAAGTTACTAGCTAAACATCCTGCTTCAAAGCCTTCTGCTGTTAGCAACGTTCAAGAACAATCTATTCAGCAACCAGAAGCTTCATCCTCTGAAAATAGCCAGTCTCAATTACTTCAACAATCTGTCAAAATACAAAACCGCTGGCTAAAATATTTGGCaaaacagaagaaaaagaagatagCTACTAAATCATCAAACCAAGACAAAGCAATACTACCAGAGCCATCAAATATATTCCAAGCTATACTATCTGAGCCATCAAACCAAGTCAACACTGTACCATCTGAATTACCAAATCAAGTCAAAACTGTATCATCTGAACCATCAAACCAAGGAAACTCTGTACTACCTGAATCATCGAACCAAGTTAATACTATACCATCTGAATTTCCAAACCAAGTCAAAACTGTACCATCTAAACCGCCAAACCAAGGAAAACCTGTACTACCTGAATCATCAAACCAAGTCAACACTGTACCTTCTGAATTACCAAACCAAGTCAAAACTATACCATTTAAACCATTAATCCAATGTAAAACTATACTACCTAAACCATCAAACCAAGAAAAACTATACCATCTAAATCATCACACCAGTCCACATATTAACGTATTTTTACCGATTAGATCAACCAATAACCTTTCAGAAAACGATACTTCTTCAAATTCTGGATCCGCTAATGTATTTCAAGTCAATCAAACTTCATCGTTAAAtgaatctaataataaatccaTAACACTACCTTCAACATCAAATGGACTTAAAGTTGTAATTTTACCAAATTTGAAGACCAATAAAACTGTAGATAAAAAGCTTGAAACAGTGCACAGTTATACATGTCCTTTATGTGCGGTGATATATCCATCTTTAATGTTCTTCCATGCTCATCTGAAATATGCTCATGCGAACTCCATTTGTAAGAATCCAGTTGATGCGCAAGTGTATCTATCAAATCAGAACATTTCTatagtaaaatgtttattgtgTCCAAGCATCTTTACAGATGAGGTCACGTATAAAACGCATTTGAAGAACTTCCACACGCATTATGTGTATATGCCATGCTTTGAAAAGGAAAAGATCGATAATGCGAATAATCCAATAGCACAAACAAACAACAATAGAAAAACTATAATACCTGAAGTTATTACTTTGGATGACAACGATAATATCGAAAACGATTCAGATAAACATACAGCCGAAGCAGATGCCATACCAACCACACGTCCATGCGAAGAGAACGATAACAAAATTGGTAAATTGAGGGTAAAGTCTTTTGCAAAGATTATTGAAAACTTATCTATGGattttgcattgaaatctAAGGAAACCACTTTTCGCGAAAATTCAGTGCCAAGTTTCGAGGATATAGTTAATGATAAACACAGATatgaaaatcttaaataa
Protein Sequence: MARVLLYERHVDAICINTHADLTCDGKIQNGVKIKEEIEEDPIDATLNINTTENCMLVRNCFNLIGSKSSPSENNISQKNNINNKENELTANSHSAYSSDVNKIINLKRKIVNTTEELVHDASSQSKKKRQSSNEIFNRNTSNAKSTSYGTTIDRFSEKRKLQKVAEKKKKLNHLECDICFRKFNSSFACEQHKYYYNFAVFKCSVCNKQYKTHDKLHEHIMTSHGKIARGSNCKPSSSYCNFCGRSFNEKLLLQSHLFHMHNELIYSSNRVKQLNLGSKNYVNTPQESTTLKIDAHEEQRSNNPVKELNTRLRNNDLIKTKGSTTEESSSHKMLSTKRLRQPTIQEYLELYKNKCDKHSPNKLNIKNGSSTFALHRDRQVKKSSNSRSTKDIKVELLSTKSSNSSKRMTHFTSEQNEKDDVSLAKKPFVKIHADVEMMKTFLDNLPDTAAKDNMNNDDTNKSILSYRELPYSLRSSRVIPFIQINLHSRSKSKDVSKTQSNAGRNIETKQIVTDLDFWKTNMIRFKCKDCIIPLIRCDENPQNNQISTNSATFKTNASLTVQRNSTSFRENNIQNKTVLKELEVSLERLAIFPAVDITKEEAILDAKKSNGDCFLCKICNKSFSSKLDKQMHIKSCHVAYMSSICNARYKRKRKLCDHYLQEHLFKLNQCCICYIILPNFIALEQHLNVHCIKYIQRKNDQHPIDKEINCKRNKEVNKLHHKYSHCKESSLSTLISHENHCVVQKEDEEDRNNSLKETSTSENLKFSDIVLKEHHNKNADKISEEQKVAYEKPHSALCENTNNDSTEKSNENQMSVIDENSVVANDLIVTEGIETANESQTSEKLPENNFPENSTINDQDIVNAQQDVVESDTKIALCIICGKQFHSHAKLQHHMRSFCNITDICPICNTGFSSKRFLRTHITAAHVPQFSKSYTFHCMFCNQGFFKKVELRSHVLHLHGQKMLNSLMNNSQPNQEESDKLNTTTCTVCYLVYETHDRYTEHMMYYYKNHIFTCSLCKQTFQGMYLFHNHYKLTHYSEDIRKSYTYICEICNEGFKHESHFYSHKMHVHLNEESSTEVAKRFEKRNPFDRKSEIRLQKPDFFTHLQKQIEQSSEYTCQICQTKCATVNYLKTHKAIYSNDGHFQCNNCSRRCRTSTLLEEHIKLTHTCRDIYNGHVCGTCGEVLETAISLKCHEKHFHSNNVTNADISNLQLVGDSYDCLFCDMDFSSASAVTMHIIRVHINKLLAKHPASKPSAVSNVQEQSIQQPEASSSENSQSQLLQQSVKIQNRWLKYLAKQKKKKIATKSSNQDKAILPEPSNIFQAILSEPSNQVNTVPSELPNQVKTVSSEPSNQGNSVLPESSNQVNTIPSEFPNQVKTVPSKPPNQGKPVLPESSNQVNTVPSELPNQVKTIPFKPLIQCKTILPKPSNQEKLYHLNHHTSPHINVFLPIRSTNNLSENDTSSNSGSANVFQVNQTSSLNESNNKSITLPSTSNGLKVVILPNLKTNKTVDKKLETVHSYTCPLCAVIYPSLMFFHAHLKYAHANSICKNPVDAQVYLSNQNISIVKCLLCPSIFTDEVTYKTHLKNFHTHYVYMPCFEKEKIDNANNPIAQTNNNRKTIIPEVITLDDNDNIENDSDKHTAEADAIPTTRPCEENDNKIGKLRVKSFAKIIENLSMDFALKSKETTFRENSVPSFEDIVNDKHRYENLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -