Lhum007806.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- -
- Assembly
- GCA_000217595.1
- Location
- NW:995166-998409[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.7 3e+02 1.5 0.1 1 15 61 75 61 78 0.80 2 15 5.7 3.6e+02 1.3 0.2 1 8 129 136 129 139 0.86 3 15 6.8 4.2e+02 1.0 0.6 1 7 278 284 278 286 0.90 4 15 0.0013 0.082 12.7 1.3 1 23 484 506 484 506 0.94 5 15 0.16 10 6.2 0.5 1 23 513 536 513 536 0.91 6 15 0.00037 0.023 14.5 1.3 1 23 542 564 542 564 0.97 7 15 0.0036 0.23 11.3 1.4 1 23 570 592 570 592 0.99 8 15 7.9e-05 0.0049 16.6 2.9 1 23 598 620 598 620 0.96 9 15 0.0012 0.077 12.8 0.2 1 23 633 656 633 656 0.95 10 15 0.00017 0.011 15.5 4.0 1 23 672 695 672 695 0.95 11 15 0.00035 0.022 14.5 0.6 1 23 703 726 703 726 0.97 12 15 6e-05 0.0038 16.9 0.4 1 23 732 754 732 754 0.98 13 15 0.00012 0.0074 16.0 2.8 1 23 760 782 760 782 0.98 14 15 0.0001 0.0063 16.2 3.5 1 23 788 811 788 811 0.98 15 15 0.0013 0.083 12.7 0.7 2 23 818 839 818 839 0.98
Sequence Information
- Coding Sequence
- atggatgaatttttgtatacaatttgtaaaaataccaAAACGGATGCAAATGatacattaatatgtaatgtTTGTGGTGTTCAACTTgaagaaagagaatatatttttgatgagGTATcgcagaaagaaaaattaatcatcaCGTTACCAACCAAGatcttACTAGAGGCTGATTCTGAATACATATGTTGGGACTGTcatgaaagaattaataattattatgaatttgctcaaaatattgttttaaattctaagaaaaaatataatacagcaGGAATCAACTCAGCAGGAATCAACTCAGCAGGAATCAACTCTTTACTTGTAGTTGatgaaaatcataaaatagaaataacagCAATTTCAAATCTCTATAGTGACATGATATATACATGTCCAAATTGCaacataaatctaaaaatcttAGTAAAGAATAATCCTGAAGGTTGTTATTATCCGTTCCATATTTCATTGATTGTTGTAGATCAAacggaaaaattgatattggaaaaaaatgcacAAGCGTGTGAAGATACAACGGAGCTCGTTAAAGgaatttgtagaaataaattaaacgtaGAAGACAAATTGAATAACTTATCATTATGTAATGATATTGCCAAAGACATTACTAACCataatgaacaaaatattgataaaatgcaAGACAGCTCGCCAATGTTACAAGAAGACATCAACAATCATGACTTTATTCAAAATGTTTCAGAACACTCaaaagaaaatcttaatacagcacatattaatttacttgaaGATAatgagaatgaaaaaatagaaatgatgACGTTATCCAAATTATACAGtgatgtaatatatacatgcccaaaatgtaatatagatttaatgattttaataagaagTAATCATGAAGATGATTgtaattatacatttcaaatttcactggttattgtaaatatacaatCATCAATACAAGATGAAGCATATAAAGGAGATACAATGGAACTTGTTAATGGAGCCTATAGGAAGGAATCAAATGTGGAAAATGAACTACAGGAATCTTTGTTGAATCAAGAAATAGCCAGTGATATTATCCATGAAAAACCAAGTACCAACAAAATATGTGGAACTTTGCCAGTATCACAAAAAGGCATTACATttcaaaagagaaagatattgcatcaaaaaggaagaaaaaagaagattagaaaaaacaaaaaaacaactGCTAAGGATATTTGCACCAAAGAGAAAGACTATAAGATGGATACAAATGAGACAAGTGCCAATGAAGCCACAAACGCTGCCGAAAAGGAGGAAAGTGCTGTAAATTGTAGTCTCTGTGGAGAATCGATAACAATAGATTTAGATCCAGATGCTATTAATGATCTGATAACATGCGCCGCCTGCGAGGACTCCACTCTATCATTGATGGTTGATGGATATGAAGCGAAAGCGATTTCCCGGCGGGAATATCAATGTTCGATGTGTCCTAAACGTTTCATACGCAAGGAGAGACTCGAATTCCATGAGATGCGACATAATGAAAACATGAACGAGTTTGTCTGCAGTACATGCAACAACGAATTTAGTGCGGAGAACTCTTTGTATGAACATTACCTCTTTGTGCACAAAGGTGCCAGACCGCATATTTGCGAGCTATGCGGAAAGTCTTATCAAATCAAAGCCCGATTGAAGGAACATCTTCGAACGCATACAGGCGAGAAACCTTATCAGTGCAACGTATGTGGTCTGCGTTGTATGACTGTTAATGCACTGAAGGGTCACAGGAAAAGTCATTTCTCCAACAATCGACATATTTGTAACATATGCAACAAATCGTATAGTAAAAAGCAGAACATGAACGAGCATCTGGAGAAACATTGGAAGATGGACAAGAACATATCATTACCTCGATTGTTTACGTGTCCTTTGTGCAATGAGGGTTTACCGACATATCGCCTTCTCAAGAACCACATGTCGGAATTACATCAGATTGGTCGTAAAGATCCTTTAGTAACAAGTCAGCAACCATTGCACGAGTGCAACGAATGTAATGAGAAATTCAAGCATCAAATGTCGCTCAAGGcacacaaagaaaaagtaCATGAAGGCAGAACAAACCCGACATTTGAATGCGACATATGCAAAGCCACATTTAGGATCAAGCAGATGCTGATAACTCACATCAAGAACAAGCATGGCGGTGAAAAGCGGTACAAATGCGCTCAATGCGGCAAAGGATTTAGTGGCACCAAGTCTCTGTACAATCACATTTTACTGCACACTGGTAGAAAGCCATACTCGTGTGAGTATTGTGATATGAGTTTTAGACGAAAAGACTCCAGGGATCTTCATCGTCGGAAGCATACGAATGAACAGCCTTTCCAGTGCCAAGATTGTGACCAGTCATTCTCCACCTACAATAATCGCTCAAAACACCGCAAGAAGGAACACGGAGAGGGTATAACCGAGAAATGTCCAGAATGTAGAGAAAAATACAACAGTCAGCAGGAAGTCAGAATTCATCTGAACAAACATCTCGGCGAAAAGTTGAATGAATTATTGCGAATAACACGATGCGTTTCACGAACTGgagtaaaataa
- Protein Sequence
- MDEFLYTICKNTKTDANDTLICNVCGVQLEEREYIFDEVSQKEKLIITLPTKILLEADSEYICWDCHERINNYYEFAQNIVLNSKKKYNTAGINSAGINSAGINSLLVVDENHKIEITAISNLYSDMIYTCPNCNINLKILVKNNPEGCYYPFHISLIVVDQTEKLILEKNAQACEDTTELVKGICRNKLNVEDKLNNLSLCNDIAKDITNHNEQNIDKMQDSSPMLQEDINNHDFIQNVSEHSKENLNTAHINLLEDNENEKIEMMTLSKLYSDVIYTCPKCNIDLMILIRSNHEDDCNYTFQISLVIVNIQSSIQDEAYKGDTMELVNGAYRKESNVENELQESLLNQEIASDIIHEKPSTNKICGTLPVSQKGITFQKRKILHQKGRKKKIRKNKKTTAKDICTKEKDYKMDTNETSANEATNAAEKEESAVNCSLCGESITIDLDPDAINDLITCAACEDSTLSLMVDGYEAKAISRREYQCSMCPKRFIRKERLEFHEMRHNENMNEFVCSTCNNEFSAENSLYEHYLFVHKGARPHICELCGKSYQIKARLKEHLRTHTGEKPYQCNVCGLRCMTVNALKGHRKSHFSNNRHICNICNKSYSKKQNMNEHLEKHWKMDKNISLPRLFTCPLCNEGLPTYRLLKNHMSELHQIGRKDPLVTSQQPLHECNECNEKFKHQMSLKAHKEKVHEGRTNPTFECDICKATFRIKQMLITHIKNKHGGEKRYKCAQCGKGFSGTKSLYNHILLHTGRKPYSCEYCDMSFRRKDSRDLHRRKHTNEQPFQCQDCDQSFSTYNNRSKHRKKEHGEGITEKCPECREKYNSQQEVRIHLNKHLGEKLNELLRITRCVSRTGVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -