Lhum005099.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- prdm10
- Assembly
- GCA_000217595.1
- Location
- NW:1061825-1074917[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00028 0.017 14.8 1.0 2 23 528 549 527 549 0.96 2 11 0.00097 0.06 13.2 0.1 3 23 563 583 562 583 0.96 3 11 0.012 0.78 9.7 3.3 1 19 600 618 600 622 0.93 4 11 0.00027 0.017 14.9 0.3 2 23 631 652 630 652 0.97 5 11 0.0014 0.089 12.6 0.4 1 23 659 681 659 681 0.98 6 11 0.00063 0.039 13.7 4.2 1 23 688 710 688 711 0.95 7 11 0.0017 0.11 12.4 4.6 1 23 716 738 716 738 0.98 8 11 2.4e-05 0.0015 18.2 5.9 1 23 744 767 744 768 0.95 9 11 0.0012 0.077 12.8 1.7 1 23 800 823 800 823 0.97 10 11 2.7e-05 0.0017 18.0 2.4 1 23 845 868 845 868 0.97 11 11 0.0028 0.17 11.7 3.4 3 23 906 927 906 927 0.98
Sequence Information
- Coding Sequence
- ATGGATCCAAGGGGCCCTCCTGAGGGGGCCCCTGCTGAGTCCTTTGAGATATCCAGCATTGACAAGGGAGCTGACATTTCAGTGAATTGGCCTACTGATCACGCTTTTGCTTCATCCTTGTGTGAACAAccgaaaaaattgaacaacAGGCTTCTATTTTTGACTGTGGAATATGTGGAGGATCAGTCACGATTATTTCCCACATATGAGCAGATTTCCTTTTCTCCGAGGGCAGCATCCCCTCTGTCCGAATTTGAGCACCGCGTCAGTCCACTTGACCCAAATATGAGCTCGACTGCTAGATACTCTCCTACTCCGGTCCAATTGCCCTCTTCTCCTTTCCATAATTCGGTTGTTGTGCTTCAGAGCCCTTCTTCTCCTTTGATATCCCAACCTGAACCAAACATAAGAACAAGCATCAATTATGTGACTCAACTGGCTCATCCGATTGACACTCAGACTGTATCTCAAACAGATACTACTACAGACTTTGTTGGCAATGGGAATGAAGAGGGACTGGTATCGAGCGTCAACAGTGAATTGATTTTAATGCAAGAAGCTACGCCTGAGTTGGAATCTTCAGCAACCCCATTAATGCTAACAGGAATACCAAGCACAGACTTTAATCTAACCAGAGAGTTTTTGGTGATGCAAGATGATCAAATAAACGTTATCAGTAcgtttaaaaatcaaaatatggAGATAGAAGACAATCATGTTACTTTACCATCAGTAACGGAAGGCgcaaacaaagaaaataataattttattataccaGAATGTGATAAAGAAGATCaacaaattatcaaatacGAGCAAATTACGAAGGAATCACCACCAactgaaaagaagaaaacgatTGAGAAGAAAGATGTGAGAAGATCCAAGCGACTTATAACAGATAAAAAGGATTTCTGGTGCGACGACTACGACACTAATTGCACGAAAGACGATAGCTGTAATCTGAACGATGTGTGCACAATCGCAGATCAACCAGTACCATCGCGTGCTGTAGCAACACTGCCAGGATCATATCTTTCGTTAAACAAGCTATCTACTTCGCATGCTGCAGCGAATGACGTGACCTACGGAGTCTTTGCAAAACGTAATATTCGAAAGCGCACACAATTTGGGCCTATAGAAGGCGTACTGTGCGCTTACGACGGTTTGCCCTTTGAAAACGCTTTACCATTGCTTTATGAAACTGAAACTGGTGAATTTCTGAAAGTGGATGTCTCCAACGAAAaTACTTCAAATTGGATGCGTTTTGTGCGACCCGCACTCTCGTATAAGGagcagaatttaataatttgtcagCAGAAGGATGGAATAGTATTTCTGACTAATAGAAACATCTCGCCAAAGGAAGAGTTAAAAGCAGGCCCTAGTCCAGACTACGCAAGTCGCAGAAATTTGCCGTTATTTAAACCAGACATAAAAGATGAGAAAGAAGTTAATAATCTAGTACCTGGATGGCCGCGTTTGGATGGCAATTCTTACAATCGACGCATAAAAATGTTACGCGGCAGAAATATGAAGGAAAAGGAGAACTCGCGGCAAAACAAGTGCAACAAAGAATGGAAATGTTCCGTGTGCCACTTGATTTTCAGAAAACAGTCTCTGCTCAACCTGCACACAGCCGTTCATTCTTCTATCGATATCAAAATAGAGAATCAAACGTCCGCATGCCCACAGTGCGGACTGGAATTTCAGAAGCAAAGCGAGTTGGTGAATCACGTATCTCAGCACGGACGATCGGCGCTATCCAAAACGAAGAGATTAACTCCTCTAAGTACATACAAGTGTTCAATGTGTTACAAACGTTTTGCTACGAAGATACGATTACAACAGCACTGCTTGGCGCATGGTGCTGAGGACCAAAAACCACTGCCATGCAGTATCTGCTTGAAGCGATTTATGAACAACTCCGCGTTGTCCGGTCATCTGAAAACGCATAAAGaaaataagCAGGTCTTCGAATGCCCAATGTGCAAGCAGCTATTTCGCCAAGGTACGATGCTGAAGGATCACGTTGAGACACATAGAAATCCAGACGGTATATTCAGCTGTCCCCACTGCCAGCGAACGTTTATCAAATATTCGGTCATTCGCAAACACATTCGTGCACATCACTGCGAAAGGAAGCACAAATGTCAACACTGTGCGAAACGTTTCCCGACGGTCGACAAATTGCGAATGCATCTGCTAAAACATTCCGATCATAGAGAATTCCATTGTGCAAACTGTGGTAAACGATTTAAGAGAAAGGACAAATTAAAAGAACACATGACTAAGATACATCATTCTCAAACGGTTAACGGAGATCAAATGACACAAAATAACCAGACCAAGAAATTTGTGCCAAAGGTGAATCCGAGTGATTACAATCGCTTCATTTACAAATGTCATCAATGCCTGGTGGGTTTCAAGCGAAGAGGAATGCTGGTGAATCATCTTGCGAAACGGCATCCCGACGTCGCACCGGAATCTGTGCCAGAATTGAACTTACCAATTTTGCGACAAACCAGAGATTATTACTGCCAGTATTGTGACAAGGTTTATAAAAGTAGCAGCAAGCGTAAAGCGCATATTATGAAGAACCATCCCGGTGCGGCTTTGCCGCCTAGCAACCGGCAAAAGGAATCCGAGTTCTCGGGACTGCCGAATCCAAGCTTCAGCCAAACAGTGGGCAGCATCACTACTAGTCCGCAAGGCTGCCAATGGTGTCACAAACAATACGCCAGCAAGGCAAAACTCTTGCAACACCAACGCAAGAAACATGCTCATTTGATGGAGCCGGCGGATCAGATACCGCGATCGCGGAACCGACCGCCGCAAAATCAAAATCAGCCACCCACGTTGAACGATAACAACTTCCTGATATCCGACTATATACAGGGATGCGATATCAATGCGGATTTCCTCAAGcagaaaataatcaaaatcaCGAATGACGTTGATCTGATAAGCAACGGAGGCCTGGAGATGGTCGCTCAGCAATTTGTGCGTATGCGCGACATACGCTGA
- Protein Sequence
- MDPRGPPEGAPAESFEISSIDKGADISVNWPTDHAFASSLCEQPKKLNNRLLFLTVEYVEDQSRLFPTYEQISFSPRAASPLSEFEHRVSPLDPNMSSTARYSPTPVQLPSSPFHNSVVVLQSPSSPLISQPEPNIRTSINYVTQLAHPIDTQTVSQTDTTTDFVGNGNEEGLVSSVNSELILMQEATPELESSATPLMLTGIPSTDFNLTREFLVMQDDQINVISTFKNQNMEIEDNHVTLPSVTEGANKENNNFIIPECDKEDQQIIKYEQITKESPPTEKKKTIEKKDVRRSKRLITDKKDFWCDDYDTNCTKDDSCNLNDVCTIADQPVPSRAVATLPGSYLSLNKLSTSHAAANDVTYGVFAKRNIRKRTQFGPIEGVLCAYDGLPFENALPLLYETETGEFLKVDVSNENTSNWMRFVRPALSYKEQNLIICQQKDGIVFLTNRNISPKEELKAGPSPDYASRRNLPLFKPDIKDEKEVNNLVPGWPRLDGNSYNRRIKMLRGRNMKEKENSRQNKCNKEWKCSVCHLIFRKQSLLNLHTAVHSSIDIKIENQTSACPQCGLEFQKQSELVNHVSQHGRSALSKTKRLTPLSTYKCSMCYKRFATKIRLQQHCLAHGAEDQKPLPCSICLKRFMNNSALSGHLKTHKENKQVFECPMCKQLFRQGTMLKDHVETHRNPDGIFSCPHCQRTFIKYSVIRKHIRAHHCERKHKCQHCAKRFPTVDKLRMHLLKHSDHREFHCANCGKRFKRKDKLKEHMTKIHHSQTVNGDQMTQNNQTKKFVPKVNPSDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVAPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRQKESEFSGLPNPSFSQTVGSITTSPQGCQWCHKQYASKAKLLQHQRKKHAHLMEPADQIPRSRNRPPQNQNQPPTLNDNNFLISDYIQGCDINADFLKQKIIKITNDVDLISNGGLEMVAQQFVRMRDIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00885376;
- 90% Identity
- -
- 80% Identity
- -