Lhum004297.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- -
- Assembly
- GCA_000217595.1
- Location
- NW:5365-9737[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.71 44 4.1 0.2 1 21 294 314 294 317 0.81 2 11 6.4e-05 0.004 16.9 1.8 2 23 330 352 329 352 0.96 3 11 0.002 0.12 12.2 0.7 3 23 365 385 365 385 0.98 4 11 6.9e-08 4.3e-06 26.2 1.5 2 23 428 449 427 449 0.97 5 11 0.0012 0.076 12.8 0.1 1 23 454 477 454 477 0.94 6 11 0.68 42 4.2 1.3 2 23 542 563 542 563 0.97 7 11 0.00024 0.015 15.1 2.7 1 19 572 590 572 594 0.95 8 11 0.013 0.78 9.6 2.4 1 22 631 652 631 652 0.95 9 11 4.3e-05 0.0027 17.4 1.1 1 23 677 699 677 699 0.98 10 11 0.0086 0.54 10.2 0.0 1 23 764 787 764 787 0.98 11 11 8.1e-07 5.1e-05 22.8 4.5 1 23 792 815 792 815 0.98
Sequence Information
- Coding Sequence
- ATGTGTTCTTCGGTGAGCGCAAATCTCTTCACGATGGCCACAATCGACAAGTGGAGCAACGCCTGTAGGCTGTGCTCGGAGGAGAAGAACGAGATGTTGCCTATTTTCGGCGACGAAGGCGTACAGCGTAAAGTGGCCCAAAAGCTGCGCGCTTGCCTGCCCGTACTCGTTTACAAAAGCGATCCTTTACCGAAACAGATCTGTCAGTTTTGTGCAGCCAGACTGGACGACGTGTACCAGTTCAGAGAATTTTGCCTGAACGTCTACAGGAGTATGCAAGCCATGCTGTTGAAGTATAATCAGATAGAATCTGTGCAGATATACCTCGACGCAATGAGAAACTCGTCAGACCCATGCCAGGCACAACTTTGTAAGGAAAAATCTAGAGCGCCACCACCGTTGGTTCCTTTGTCAGCTGCCTTGCCTCTTGATGATTTAGTAATTCCAATGAATCAAGTTAGTCAagatcaaaatatttgtatggaAGTCTTGCCCGAACTGCCATGTGAAGTGGAGATCAAGGAGATGAATGCGGATGCAAGTTTGGACGATGAAGCTGCTATTTGTGAAGCACTGAATATAAGACGGAAAACATCAGATGCATTTGATATgaacataaacataaaaaaggaTATCTCTATTATATCCGATACAGAAGAGAACAAGGTGATTATTAAGACAGAGTATCAAACGAAAAAAGAAGGGAAACGGCTCAGTATCTTAGAGCAAGTGCTAACCGGTAGTTTAACAGTGAATAATCACCAGCAACTACAatctaaacaaaaattaacttCGGAATGGTGGTGCGCGCCTTGCAACAGCTATTACAAATCAAAGGAGATTTTAGTGAAACACATGCAATTGGACTGCCCACGTGTATATACTTGTAGAACATGTTCTTTATCTTTTGACTCTGTTGAAATCTTGGCAAAGCATGAGGCAAATAATCACTTAAAAGTCAAGTTAAATTTCGCAGGCAGCTTGAAAGAGTGTCATCAGTGCGATCGACAGTTTGCAAGCTGGGAAATGTTGAGACAACACAGATTACGCGACCACTTAGCCGAATTGAGCGAGATTGGATCCAAAACATGGTGTTCATTATGCAATAGattttttccCACAGTAGAAACATATCAAAAACACATCCAATTACACCAAATAAATGAGAATTCCGTAGTGCCGCAAAAACTGCCTTctgcagaatttttaatatcaaagataGCAGAACGACCGAGAGAGATTAAAAAGGaagaacatttttatgaaagcgGAAGATCTCTTACATGTCCCACTTGCGGAAAGGTTTGCACCCAACAAAGTGCGTTATCAAATCACATGCGCACTCATGAGCCAAAAAGATACAAATGCGAGATTTGCGGCCGGTCATTTGGACTTTTTATACGTCTAGCCGCGCACAGAATGTCGGAACATAATAAGCAGCCATCAATGTTGTCAGCAGTCGAGCAAGAAGAAGCGCTCAATGCTGAGAGAGAAGCAAGGGAAGCAAGGGAAGCAAGGAGTCGtgggattaaaaataaatcttatccGGAGATGATAGAGAGAAATGATATTCCGTCGGACGACGAGCCTTCAGTAAAACGTAGCAATTCTAAAAACGTAGCAAGATGCGGCATCTGTCAGCAGTGGTTCGGTGATCACACCACGATGTTGACGCATCTTCAAACGCACTCGGAGAATTTTTCCTATAAAAGTTTCACGTgtcaaatatgtaaaaagtcATTTAAGGAACAATGGCAGCTGCTCAGGCACGAGATTTGTCATAAACAAATTTGCTCATCGCCCGATCACACTTCGCTGTACACATCCGCTGTTAGCGGCAAACCGCTGACGGACAAGGCGCATCAGAAGACGCACACGGTGGACAGAACCTACCATTGTGCAAAGTGTAACAAGATCTTCTTCAAAGAGGTATCGCTGCTCGCTCATCAATGTACGGGCGTGGCGCTGTTTGGAAAGAAAGTCACCGCGAAACTTTTGCAAAGGACACCGAATCGTACCAACAAGAGATACAATTGTTCCAAGTGTGAGGCGTCTTTTTCAAGCTCACAATCGCGAAATGCTCATATGCGAATGCACTCCGAAAGCACGAAAATCAATACGGCACAGACACAGGAGATAAAAGTTGAAACAGATGACGAACCGATGCCAAAATTACGACCGGAGACATCGCTGGAATACGATATATCTCCTATCGAGCCAAAAGTTGAGATCAACGAGCAGAGCGCGCCGCCACCTCTCAAACGAACTCTTATCAAAACTGCTAACggATACCGATGCGGTGTGTGCCAGTCGCCGTTCATATCGCGAGAGCTCGCCATTGCGCATTTAAGATCAGCACATCCCGTGATGCCATATCAGTGTCCTTATTGCAAAATACGCTTCACGACGCAGTACACGTTCACCCACCACATCAGAACGGAGCATCCAGACGAGCCCGAGAAATGA
- Protein Sequence
- MCSSVSANLFTMATIDKWSNACRLCSEEKNEMLPIFGDEGVQRKVAQKLRACLPVLVYKSDPLPKQICQFCAARLDDVYQFREFCLNVYRSMQAMLLKYNQIESVQIYLDAMRNSSDPCQAQLCKEKSRAPPPLVPLSAALPLDDLVIPMNQVSQDQNICMEVLPELPCEVEIKEMNADASLDDEAAICEALNIRRKTSDAFDMNINIKKDISIISDTEENKVIIKTEYQTKKEGKRLSILEQVLTGSLTVNNHQQLQSKQKLTSEWWCAPCNSYYKSKEILVKHMQLDCPRVYTCRTCSLSFDSVEILAKHEANNHLKVKLNFAGSLKECHQCDRQFASWEMLRQHRLRDHLAELSEIGSKTWCSLCNRFFPTVETYQKHIQLHQINENSVVPQKLPSAEFLISKIAERPREIKKEEHFYESGRSLTCPTCGKVCTQQSALSNHMRTHEPKRYKCEICGRSFGLFIRLAAHRMSEHNKQPSMLSAVEQEEALNAEREAREAREARSRGIKNKSYPEMIERNDIPSDDEPSVKRSNSKNVARCGICQQWFGDHTTMLTHLQTHSENFSYKSFTCQICKKSFKEQWQLLRHEICHKQICSSPDHTSLYTSAVSGKPLTDKAHQKTHTVDRTYHCAKCNKIFFKEVSLLAHQCTGVALFGKKVTAKLLQRTPNRTNKRYNCSKCEASFSSSQSRNAHMRMHSESTKINTAQTQEIKVETDDEPMPKLRPETSLEYDISPIEPKVEINEQSAPPPLKRTLIKTANGYRCGVCQSPFISRELAIAHLRSAHPVMPYQCPYCKIRFTTQYTFTHHIRTEHPDEPEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -