Basic Information

Insect: Linepithema humile
Gene Symbol: -
Assembly: GCA_000217595.1
Location: NW:2512761-2518293[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00027 0.017 14.9 0.8 1 23 356 379 356 379 0.96

2 10 4e-06 0.00025 20.7 0.6 1 23 385 407 385 407 0.98

3 10 1.1e-06 6.8e-05 22.4 3.7 1 23 413 435 413 435 0.99

4 10 0.0017 0.11 12.4 2.1 1 23 441 463 441 463 0.99

5 10 0.0079 0.49 10.3 1.5 1 21 469 489 469 492 0.93

6 10 0.002 0.13 12.1 3.2 1 23 498 518 498 518 0.95

7 10 8.8e-07 5.5e-05 22.7 0.5 3 23 526 546 524 546 0.97

8 10 0.00011 0.0068 16.1 1.4 1 23 552 574 552 574 0.98

9 10 0.0012 0.074 12.9 4.5 1 21 580 600 580 603 0.96

10 10 0.0045 0.28 11.0 1.2 3 23 611 632 609 632 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00027	0.017	14.9	0.8	1	23	356	379	356	379	0.96
2	10	4e-06	0.00025	20.7	0.6	1	23	385	407	385	407	0.98
3	10	1.1e-06	6.8e-05	22.4	3.7	1	23	413	435	413	435	0.99
4	10	0.0017	0.11	12.4	2.1	1	23	441	463	441	463	0.99
5	10	0.0079	0.49	10.3	1.5	1	21	469	489	469	492	0.93
6	10	0.002	0.13	12.1	3.2	1	23	498	518	498	518	0.95
7	10	8.8e-07	5.5e-05	22.7	0.5	3	23	526	546	524	546	0.97
8	10	0.00011	0.0068	16.1	1.4	1	23	552	574	552	574	0.98
9	10	0.0012	0.074	12.9	4.5	1	21	580	600	580	603	0.96
10	10	0.0045	0.28	11.0	1.2	3	23	611	632	609	632	0.97

Sequence Information

Coding Sequence: ATGAGCAGCATGCAGACAGTCGCGAGCGAGATAATCGGCCCCGAGCAGCAGCCGCAGGAGGAAATTCAGCTGACCGAATTGCAGCCCGTGAAACAGTCGCGCATCAGAGAGAACAGCTTGAAGGATGCCGACGCGACCGACGCTCTGCGGGCGCTCAGAAGTTTCTCGGGTGAGTGCAACGACGATGAGAGCTTCGAGCTGCATCGAGAGCAGTTCGATTTTCGCAAGGGTGGCGCCGAACAGTCGGAACGTCAGGGCGGCAAGCGTCGGCGAGCGGAGACTCGTCGGAGGAGAACGGCCGAGTCGAGGAACAGCGTCGAAGATTCCGACGAAGAGAAGAACGACGACGAGGCggcgagaaaaaagagagcgcGAGGCGGCAAGAATAACGTTTGCGCGAAAGCGCAACCGAAGAAGAAATTGACGAGATCGAGCAGGAAGAAAAGCGACGGAGAGAGCAATCATGGAACAAACGGCAAGTCCACGAAGAAGGATGGCGAAAGCAAAGAAAAGCGCGTGTCCGACTATGAGGAGGACAGCGACGAATACCTGGATTTGGACAAGACAGACTGCTTCAAGGACGAGATTTATGTGTACAGACGAGAGACGCCGTTGGACCCGAGCTTGAATTCGGAGTCGGAGGAGCCGGGAGCGACGAATCGCGAGATGCAGCGGGACCCTTGCGAAAAGAAGCACGCCACTACGGACGGTGATCTGTTCGACGAAGCCTTTCAGAAGAAAACATACGCTGAGAATATTTGTACGGACGAGAAGCAAAAAAAGTGCGCGTCCAGCGTGGACGACGGGATCGCCGAGAAGGAGGACGCCGCGAAAGAATTCGGCCAGAAGATCGACGCTATCATCCAAGCTAATTACCAGCGCGAGAACAACAACGTCGTCGGGCTGCAGATCTCGGAGGAGTCCTCCGCCGCCGCGTCGATGAACGCGGAGAGCAGCGACGCGGTCGACAGCAGTGACAGCGGCGGCGAGacgaagaagacgaagaaggCGAGGCGGAAGAAGCCCGAGCAGCAGGCGAAAGAGGCGGCGAACAAGCAGAAGAAGCACCGTTGCGTGGTGTGCGAGAAGCGCTTCACGGGCCGGGGCGGCCTGCGGGATCACTACAAGGTGGTGCACGGCGTCGGGCCGGTATTCATATGCGACCAGTGCGGCAAGGAGTTCGCGCTGAAGGAGCGCCTGAAGCTGCACATGCGTACGCACACCGGCTTCAAGCCGTACAAGTGCTCGGAGTGCGACAAGAGCTTCGCGCGCGGCAGCCAGCTCCATCAGCACCGTCGCCGGCACAGCCAGATCAAGCCGTACACCTGCGAGCTGTGCTCGAGGAACTTCACGTGCGCGGCCAATCTCTCGGTGCACTTGAAGCGCCACAGCGGCCAGAAGGATTATCTCTGCGATCTGTGCGGACGCGGCTTCCTGCGGCGCGACGCCCTGAAGAAGCACCTGCAGTGCCTGCACCGCGACGTCAAGTCCTTCCTCTGCGTCGTCTGCAACAAGACGTTCAAGGGCCACCTGTCGCAGCACATGAGGACACACGCGCGCGACCGTCCGTACGGGTGCGCGACGTGCGGCCAGCGTTTCGCCCAGAAGTCCCAGCTGACGGTGCACCAGAGGACCCACACGGGCCAGCGGCCGTTCCGCTGCCTCGTCTGCTGGCAGGCCTTCGCCCACTCGACTGCGCTGAAGCTGCACACCCGCCGCCACACCGGCGAACGGCCGTTCAAGTGCTACGAGTGCAACACCGGCTTCACGCAGCTGCCGCACTGGAAGAAGCACATGCGATGCATACACGGCAGGGACGATCCGTACGGCTGCCGGTACTGCGAGAGCTTCTTCAAGATGAAGAGCGACTTGGAGACGCACGAGAAGACCTACCACCCGACGGAGGTCGAGGCGGAGGAGAACGGCGACGATGTCAAGCTGATCAATGGCTCCGATATTATAATCGAGAAGAAATCGGTCACCGCCAAGTACAAGCTGATGACGGTGGAGAAAATGCGACTGCTGCTGGCGGTGCTGCTGAAGAAGATCAGCAAGCAGGAGCGACTGGACGAGCTCGGCTTCGGTAAACGTCTCATCGACGACGTCCTCAAGGACTCACTGGCGTCCGCCGGTAAGACACCGATCACGAAGAAGGGTCTGTCTGAACTCGAGGCTCTCACCCAGAATCTGGAGATCTTCCTCGAGTGGACGGTGCCGAAAGAGCACTGGGAGAATTTTCGTAAGAAGGAAAAGTCGCCTGGAGATATTCTGGAAGCGCTCACAGCTGAGTAA
Protein Sequence: MSSMQTVASEIIGPEQQPQEEIQLTELQPVKQSRIRENSLKDADATDALRALRSFSGECNDDESFELHREQFDFRKGGAEQSERQGGKRRRAETRRRRTAESRNSVEDSDEEKNDDEAARKKRARGGKNNVCAKAQPKKKLTRSSRKKSDGESNHGTNGKSTKKDGESKEKRVSDYEEDSDEYLDLDKTDCFKDEIYVYRRETPLDPSLNSESEEPGATNREMQRDPCEKKHATTDGDLFDEAFQKKTYAENICTDEKQKKCASSVDDGIAEKEDAAKEFGQKIDAIIQANYQRENNNVVGLQISEESSAAASMNAESSDAVDSSDSGGETKKTKKARRKKPEQQAKEAANKQKKHRCVVCEKRFTGRGGLRDHYKVVHGVGPVFICDQCGKEFALKERLKLHMRTHTGFKPYKCSECDKSFARGSQLHQHRRRHSQIKPYTCELCSRNFTCAANLSVHLKRHSGQKDYLCDLCGRGFLRRDALKKHLQCLHRDVKSFLCVVCNKTFKGHLSQHMRTHARDRPYGCATCGQRFAQKSQLTVHQRTHTGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCYECNTGFTQLPHWKKHMRCIHGRDDPYGCRYCESFFKMKSDLETHEKTYHPTEVEAEENGDDVKLINGSDIIIEKKSVTAKYKLMTVEKMRLLLAVLLKKISKQERLDELGFGKRLIDDVLKDSLASAGKTPITKKGLSELEALTQNLEIFLEWTVPKEHWENFRKKEKSPGDILEALTAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -