Basic Information

Insect: Linepithema humile
Gene Symbol: -
Assembly: GCA_000217595.1
Location: NW:2935622-2940536[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.027 1.7 8.6 0.2 3 23 457 479 456 479 0.94

2 10 0.0016 0.099 12.5 1.4 1 23 485 509 485 509 0.98

3 10 8.1e-05 0.0051 16.5 0.3 1 23 515 539 515 539 0.97

4 10 8.9e-05 0.0056 16.4 0.1 3 23 547 569 545 569 0.93

5 10 4.5e-05 0.0028 17.3 1.7 1 23 576 600 576 600 0.97

6 10 0.00019 0.012 15.4 0.7 2 23 608 631 607 631 0.95

7 10 3.2e-05 0.002 17.8 4.9 1 23 637 661 637 661 0.97

8 10 6.1e-06 0.00038 20.1 0.3 1 23 667 691 667 691 0.97

9 10 0.00017 0.011 15.5 0.8 1 23 697 719 697 719 0.99

10 10 0.58 36 4.4 0.1 1 23 800 825 800 825 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.027	1.7	8.6	0.2	3	23	457	479	456	479	0.94
2	10	0.0016	0.099	12.5	1.4	1	23	485	509	485	509	0.98
3	10	8.1e-05	0.0051	16.5	0.3	1	23	515	539	515	539	0.97
4	10	8.9e-05	0.0056	16.4	0.1	3	23	547	569	545	569	0.93
5	10	4.5e-05	0.0028	17.3	1.7	1	23	576	600	576	600	0.97
6	10	0.00019	0.012	15.4	0.7	2	23	608	631	607	631	0.95
7	10	3.2e-05	0.002	17.8	4.9	1	23	637	661	637	661	0.97
8	10	6.1e-06	0.00038	20.1	0.3	1	23	667	691	667	691	0.97
9	10	0.00017	0.011	15.5	0.8	1	23	697	719	697	719	0.99
10	10	0.58	36	4.4	0.1	1	23	800	825	800	825	0.95

Sequence Information

Coding Sequence: ATGTCGCGCAGGGGAGCCGCCGCTGTtaccgccgtcgccgccgcttGCAGGTCAAAAAGACGCAGTCGGGAAAGAATCGGATCTGAGAGCGTATCGGAAGGAACGGAGTGCGCGCCCACCGATGCGCTTTTTGTCCCGTCAAGGGCGGGCGAGGTCGCTAAGAGAGACAGACGAATTCGGAAAAGCGATGGCTGGCACGAGACGACGAGCGGTAGGTGCGCCGACGTCGAAACGGTAGCCGACTTCGAGAAATGGTTGAGAACACGCAGTACAGAGCCGCCGATGCCGTCGAGCATGGACCTGGACACGGCCAAGGTGGTGGAAGGCGTGGACCGTTACTTAGGCGAGGAGATGCTGTCACACGGCTGCTTTCTGGGCAAGGACCCGTACGGTCTGTCCATCGACCTCGATCTGGCCGACGCCAAGAAGCTCAATCTTTCCTCCGGTTACGATCCGATACTACCGGATCTGACGCAGAGCGAGAACCGGCTGCTCGAGCCGCCGTGCGAGAAGGTCGTCGACGAATTCATGCTGCCGGAGTTCCAGTTGGACCATCTGGACCCGCTGGCGGCGCTCTCGCCGGACGACATGATGGTGGCCGGTGAGATTCTGCCGTCCACCAGCGCCCATCATCCGACGTTGAACGTAACGGAGAACCAGGAAGTCGAGCGAATTAGTTTGAAGACGGAAGTCGCGGAGCGGAATGACGAGGCGGATTGTGAAAAATGCACGCAGGTTGTCCTCGACGAGCTGCCGGCGGATTTGGAAGCTGTGGACGAGATCGTGAACGTCAAGTTGGAGGAGGAAGCCGCGGCGCAGGCCGCGGCAAATCCCTCGGAACTTTTCATCGCAACTCTGACGCCAATGGAGGAGGGCTCGTCGAGTTCTATGGTGAATTCCGCGGAAGCGGACGTTCAAGACACCATAATACACCAATTGAAGTCGAAGACCAGGACGAAGCTGGAGCCGCGTATCATTAAGAAGCGTCGACAGAGATTCGAGAAGCTCGACAACCCAATCAACGGCAAGAACTTCGCCGACGTGGCTGCGCAGGATGGCGTGATGGCTGTGGTCGCCATATCGACCGACAAGATCTCCAATACGACGCAAATTGTTATCAACACCGGCACGGAGAAGCAGATCTATCAGGGCAAAACCTCGGAGCTGATCGAGGCGACGGGCAACTTTCCGAAACTGCCCAAGATAGACACCACGTCCGCGGTCTGGAACGGTGCCGTCGAGTATGGTGTCGATAATAATCCGAGTAATCAGTACGAAATTGTTATATCCAACGCGTTGGAGGAACTAGGCATCACCGACGACAGTCTGCAGCCCGTGTGCATCACCGACCACGACAAGGTGTGGCTCTGTCCGCGAGATGGCTGCAACAGGCAGTTTGGCAGACTGTACACTTTGAAGGGTCACCTGTTAGCTCATTTCGGAATTAGGCCATTTAAATGCGATTTCGAAGGCTGCACCTGGGCCTTTTATTCCGAGTTCAAGCTGAAGAGACACAAGGAGACGCATCTAAAGCGCAAGGATTACGTGTGCGAGGTGGAGGGCTGCAATCGCCGCTTCACTACCATTTACAATCTGTGGAGCCACACGAAGCTGCACAGTCGTCCGAACCGAATCGTCTGTCAGGTGCCGGACTGCGGCGAGAAGTTCCAAACGAAGCGAGCGCTGGAGCTGCATATGAAGTCGCACGATCAACGCCACGCGCCCTACGTGTGTCAGCACGAGGGCTGCGGCAAGCGTTACTACAGCAGTAACGCGCTGACGTCGCATCAACGTTCGCACAGCTACAAGGAGGTGGACATCAAGTGCTCGTGGCCGGGATGCGGCAAGGTGTTTGACAAGCCGTGCCGGCTGAAGGCACACACGCGCTCACACACCGGCTGCAAGCCGTACCACTGCACGTTCCAGGACTGCAAGTGGGCCTTCTCGTCGTCCAGCAAGCTCAAGCGCCACCAAAAGAAGCACACGAACGAACGCAAGTTCGTGTGCGACGCGCCGGGCTGCGGCAAGGCATTCATGCGCTCGGAGCATCTGAAGGAGCACCGGCTGACGCACACGGAAGGTCGTTACTTCCAGTGCTTCGTGTGCGAAGCCCGATTCTCCGCCAAGAGCAGCTTATACGTGCACATAAAGAAGCATCAGGCTAAGACCGAGGCGGGCGCGACCGACAGCGCGCCGGAGTGCACTTCCGGCGGTCAGAAGCGCGCGAAAACGAAGGAATCTCAATATTCGCGCGTGAAACCGATCGTCAGGCCGAAACCCAAGTCGACAGAGCTCGTGACGGCCGACGAGATCGCTGCGAAGGGGAACGATGCCGAGGAGCAGGATGTCCACGACGCCGGCGAGCGTTTCGAGAACCTAGATCAACTGAAATGGCTGTACCGTTGTCCGATCGAGGTGTGCGGGCACTTGATCAACGGCGAGGCGAGTCTGCGCGAGCACCTGCTGAAGACCCACGGCATACGATGTGGCGACTCGCTCGAGCCGCAGTTCTCAGACGCCGCCAATAACGTGGACTACATTCTATACACGGTGCGCGATTCGTCGTCGAACTCGCCGACCGAGGAGGAGCAGATGGTGATGGTGACTCCGTGCGACGCCGTCATACTCGGCACGACCTCGCCGTCGTCGAGCATGGACCGTTGCCTGCCGGAGCCGGAACCGCCGCCTTTCAACGCCCTGAAGAACTTGGAGCCGCTCGAAATCGACGCGCGCGCTGACAATCGAATCAAAGAGGCCGTGCTGGCGAAGAAGAATCAGAGATCGGCGAGGACGGATTTAACGTACACGGACTGGTACAGGTTGAAGATAAACGGTGCGCTCGGCATGGACTCGGTAGCGGCGGATACGTCGAACCTCGTACCAGACGTAGACGCGAGCAGTGATCTGAGTGAGGAGGGCGAGGGCGAGGAAGGTCTGTTGCTCACGGAGGAGCTGCCGTCGATGTACTATCAGGACGACGCGGCGGGCACGGAGTATCAGGTATTGTTGTTGGACTCGAGCCCGCTTGAGAGTGCCGGCAACTTACGTGGCCTCGAATAA
Protein Sequence: MSRRGAAAVTAVAAACRSKRRSRERIGSESVSEGTECAPTDALFVPSRAGEVAKRDRRIRKSDGWHETTSGRCADVETVADFEKWLRTRSTEPPMPSSMDLDTAKVVEGVDRYLGEEMLSHGCFLGKDPYGLSIDLDLADAKKLNLSSGYDPILPDLTQSENRLLEPPCEKVVDEFMLPEFQLDHLDPLAALSPDDMMVAGEILPSTSAHHPTLNVTENQEVERISLKTEVAERNDEADCEKCTQVVLDELPADLEAVDEIVNVKLEEEAAAQAAANPSELFIATLTPMEEGSSSSMVNSAEADVQDTIIHQLKSKTRTKLEPRIIKKRRQRFEKLDNPINGKNFADVAAQDGVMAVVAISTDKISNTTQIVINTGTEKQIYQGKTSELIEATGNFPKLPKIDTTSAVWNGAVEYGVDNNPSNQYEIVISNALEELGITDDSLQPVCITDHDKVWLCPRDGCNRQFGRLYTLKGHLLAHFGIRPFKCDFEGCTWAFYSEFKLKRHKETHLKRKDYVCEVEGCNRRFTTIYNLWSHTKLHSRPNRIVCQVPDCGEKFQTKRALELHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSHQRSHSYKEVDIKCSWPGCGKVFDKPCRLKAHTRSHTGCKPYHCTFQDCKWAFSSSSKLKRHQKKHTNERKFVCDAPGCGKAFMRSEHLKEHRLTHTEGRYFQCFVCEARFSAKSSLYVHIKKHQAKTEAGATDSAPECTSGGQKRAKTKESQYSRVKPIVRPKPKSTELVTADEIAAKGNDAEEQDVHDAGERFENLDQLKWLYRCPIEVCGHLINGEASLREHLLKTHGIRCGDSLEPQFSDAANNVDYILYTVRDSSSNSPTEEEQMVMVTPCDAVILGTTSPSSSMDRCLPEPEPPPFNALKNLEPLEIDARADNRIKEAVLAKKNQRSARTDLTYTDWYRLKINGALGMDSVAADTSNLVPDVDASSDLSEEGEGEEGLLLTEELPSMYYQDDAAGTEYQVLLLDSSPLESAGNLRGLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -