Lhum007645.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- -
- Assembly
- GCA_000217595.1
- Location
- NW:36059-42252[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.015 0.94 9.4 0.4 3 21 8 27 6 28 0.85 2 13 3.1 2e+02 2.1 0.1 2 20 34 52 33 54 0.91 3 13 3 1.9e+02 2.1 0.3 1 12 239 250 239 259 0.88 4 13 0.0018 0.11 12.3 3.6 1 23 373 395 373 395 0.97 5 13 0.00013 0.0079 15.9 0.3 2 23 399 420 399 420 0.97 6 13 0.0012 0.077 12.8 5.6 1 23 431 453 431 453 0.97 7 13 0.012 0.74 9.7 0.2 1 23 472 493 472 493 0.80 8 13 0.00085 0.053 13.3 0.1 2 23 499 520 498 520 0.96 9 13 3.7e-05 0.0023 17.6 4.8 1 23 583 605 583 605 0.99 10 13 0.00018 0.011 15.4 4.1 1 23 635 657 635 657 0.97 11 13 1.1e-06 6.9e-05 22.4 0.8 1 23 663 685 663 685 0.98 12 13 2.3e-05 0.0014 18.2 0.2 1 23 689 711 689 711 0.99 13 13 0.0003 0.019 14.7 0.2 1 23 719 741 719 741 0.97
Sequence Information
- Coding Sequence
- ATGGGCTCGCTGAGTCTTGTCTGTCCTATGTGTTGCGGCGAAACCTTCAATAATTCGCAGTCTCTCAAATATCACTTGTTAAGCATAACGGACAATCTCTATTGTCCCAGCTGTTCGCAGCGTTCCGACTCTGTGACAGCGCTCATTCAGCACTTGGACAAATGCGAGCAAGATCTGGAGTGCAAGATGAAACCTGACATCATAATGGACAGGCTTCGAAAAACTGGCAAAGAGCCTGAAACCAAAGTGGATATTTTAATGGATGTCAAAACGCAGCAGATCGATCAAGGCTTCTTCGCGACTTTAAACAATACTGGCGTTGTCATAGTGGGCGACCCGCAGACAATACAAATGGATGAGAATGGAGAGATTAAAGTCGTAGAAAAGATGGACACAGAAGAAACGCAACCAGATCAAAATTCTCTGGATTTCAAGATGCCCGGGGAGTTTCCTGATGTGGTCAATGGAATGCAGAAGAGGCTGCAACCGTCGCAAGGATTAATAACTATCCCTGTGTCAAATGCCAATGTGGAACGCAAAGCTACACCGATAGAGAAGAGCGTAATCGCCGTGTTACCGGGAGGTCCCGCGCTCTTGGACGGTGACGCCACAACCTTGATCGACATGGATCGCATAAACGACGCAGGAGTGATCGACGAGGCTGGTCTGCTGCGCGTCAAGCAAGAACTGTGTGAGttgGAATCCGAGGCTGTGTACAGTTGCACCAGCTGCGAAATCAGCTTCAACTCTGTTTTGGAGCACATCAAGCAGTTTCATGATGGACAGGAGGTTCTACTGGAGATGGCGGAGCAGTTAGATGACCTAACGACGACGGTGCCTATGAACGCAGTGCCCGCGGGTCCTGAAAGCTCAGAAAACGTGGCAAACGCACGGCAACGGCAAACGATGAACACGCTGCGCACGGAGGAATGCGTGGACAATGAGGGTAGACTCTACACCAGGAAGGTAGTGCAAATCGAGAGATTCTGGGACCGCACGCCAATTCAAGTCACGTCATCCCAGTCGGCGAAGGCTCCGATGATCGAGAAGTTTTTCTCAAACGTGGAGGGCGTTAAGATGCGGGAGAAGCGGCTGACGGCGGCGTCAATGCGAATGTACAAGTGCAATCAATGCTCGCAGCAGTTTTCCAAATTGGGAAACTTTCGCGTGCACGCCTGTCTTCACGGCAACAATCGCTGCGATCAGTGCGATCAGAGCTTTGCGACTCTCAAGGCATTGCAGCTCCATGCGAAAGTGCACGAGAGTGAAGTCGATCCGAGCCAAAAGACATTTATTTGTACCACGTGTGGTACTGAGTTCTGTTCTCATAAGAGCTTACGATTGCATTCGAGAATGCACGCCCCGGTGAGAGCCAGACACGTCGATGCACCTGAGGGGACTCCTAATGCTACCTTCACTTGCCCCGAATGCGGCAAAACTTTGTCGGAGTCGTACAAGGATGCACACATGGCACTGCATACCGGCGATTCGGTGACCTGCGCCGTTTGTAACCGGAAGTTTGACTCCGCGGACAGTTTAGCGATGCACACGGCAGTGCACAGTGAGCTAGCGCCTCCGCAATCGCCTACTGCGCTTGCATCGACTTCAATAGCCGGAAGAACAACAGCGACGGGATCAACAATGGCGGCGATGGTCGCAGTGACATCAGCGTCGACGGCAGCGGCGACGATAACGACCACGGCGACGACAATGACGACGGTGGAAGCTAGTGACAGTCAGAAACCCTATCAGTGCCAGCATTGTGGTCGTAGGTTTACCAGACCTCACGAAAAAGTGAAACACGAGCGGATTCACACCGGAGAGAAGCCACACGCTTGTGAGGTACATAGACATAGTCGGCTCTGGCTGGATAGTATACGAAGTCAAATGAGCNNNNNACCGTACGCCTGCCAGCACTGCGGCAAACGCTTCAAGGCGTCGTCGGTCTACAATCATCACCTGCTGACGCACGGCGAGGAGCGCGCCTACACGTGTCCGTACTGCCCGAAGACGTTCAAGACGCGGGTGCAGCTGGCCGGTCACAAGAACAGTCACACGAAGCCGTTTCGGTGCACCGAGTGCTCGCGGCCGTTCGCGTCGCTCTACGCGGTCCGCGCGCACATCCAGACGCACAAGAAGGACAACAATCTCAAGTTCAGTTGTTACATATGCGGCGCGTCGTACGGCCGGGCGTTCGCCCTGAAGGACCATCTCAAGCAACACGATCAGGACGCGCTGGCGCCGCCGGAACCGGCGCGAGAGGAGGAGGTGCACGAGAACTTTCTCCTCGGCGAGGATTTCGAGGACAAACTAGTCGTCCCTTCGCCGCCGCTTCCCGTTGTCGCGCGTGCCGAAGTGGACGACACTGACTGA
- Protein Sequence
- MGSLSLVCPMCCGETFNNSQSLKYHLLSITDNLYCPSCSQRSDSVTALIQHLDKCEQDLECKMKPDIIMDRLRKTGKEPETKVDILMDVKTQQIDQGFFATLNNTGVVIVGDPQTIQMDENGEIKVVEKMDTEETQPDQNSLDFKMPGEFPDVVNGMQKRLQPSQGLITIPVSNANVERKATPIEKSVIAVLPGGPALLDGDATTLIDMDRINDAGVIDEAGLLRVKQELCELESEAVYSCTSCEISFNSVLEHIKQFHDGQEVLLEMAEQLDDLTTTVPMNAVPAGPESSENVANARQRQTMNTLRTEECVDNEGRLYTRKVVQIERFWDRTPIQVTSSQSAKAPMIEKFFSNVEGVKMREKRLTAASMRMYKCNQCSQQFSKLGNFRVHACLHGNNRCDQCDQSFATLKALQLHAKVHESEVDPSQKTFICTTCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPNATFTCPECGKTLSESYKDAHMALHTGDSVTCAVCNRKFDSADSLAMHTAVHSELAPPQSPTALASTSIAGRTTATGSTMAAMVAVTSASTAAATITTTATTMTTVEASDSQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVHRHSRLWLDSIRSQMSXXPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAVRAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHDQDALAPPEPAREEEVHENFLLGEDFEDKLVVPSPPLPVVARAEVDDTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -