Basic Information

Insect: Linepithema humile
Gene Symbol: ttk
Assembly: GCA_000217595.1
Location: NW:89558-114093[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.3e-06 7.9e-05 22.2 3.3 1 23 595 617 595 617 0.98

2 8 2.1e-05 0.0013 18.4 2.0 1 23 623 645 623 645 0.98

3 8 1.3e-06 8.1e-05 22.2 0.3 2 23 654 675 654 675 0.98

4 8 4.3e-05 0.0027 17.4 0.1 3 23 683 703 681 703 0.97

5 8 1.4e-07 8.5e-06 25.3 3.0 1 23 709 731 709 731 0.98

6 8 2.3e-06 0.00015 21.4 0.7 1 23 737 759 737 759 0.98

7 8 3.6e-05 0.0022 17.7 7.4 1 23 765 787 765 787 0.98

8 8 0.00018 0.011 15.5 2.1 1 21 793 813 793 814 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.3e-06	7.9e-05	22.2	3.3	1	23	595	617	595	617	0.98
2	8	2.1e-05	0.0013	18.4	2.0	1	23	623	645	623	645	0.98
3	8	1.3e-06	8.1e-05	22.2	0.3	2	23	654	675	654	675	0.98
4	8	4.3e-05	0.0027	17.4	0.1	3	23	683	703	681	703	0.97
5	8	1.4e-07	8.5e-06	25.3	3.0	1	23	709	731	709	731	0.98
6	8	2.3e-06	0.00015	21.4	0.7	1	23	737	759	737	759	0.98
7	8	3.6e-05	0.0022	17.7	7.4	1	23	765	787	765	787	0.98
8	8	0.00018	0.011	15.5	2.1	1	21	793	813	793	814	0.94

Sequence Information

Coding Sequence: ATGATGGGAGAGGTGATCCGTGTTTCTGGGAAAGCATCGGACGTCCGTGACATCCTGAAAGAAGCCATGCTATCGCAAAGGTTCGCCGATGTGGCTCTCTGCTGTCCAGGAGGCCAGAGATTCCTCGCGCATCGTCTGGTCTTATCAGCAGCTAGCCCCTATCTTCAAgaAGTGTTGCTGGCGCACAGCAAAGTCACCGCTCAGTGCGAACCGATCACGGTGATCCTGGCCGAGACGGAGGCGCCGGAACTCGCCGCTCTCCTCGGCTTCATCTACACTGGAAGCGTTACTATTCCGCGAGTGCGGCTGAACGCGTTTCTGCATGCCGCCGAAACTCTGCGCATCCGGCTTCCGCCGGTGCCGGCGATGACAATCTGCGACGAACAGGATTGCAAGCTGGAGGATGTGAAAGAAGACGTGAAGATCAGCTCCAAGTACCTACAGTGCGATCGGTATTCTTGGGGAAGGTCGGAAAGACCGCCCTACGAAGATTCGCTCTACAGAAAGGACTCTTGCATCAGGATATTCGCGACCGATCACAACAGAGACATTCTCAGAGACACCAGAATGTTTCACGAAGTCAACAATCCTGGCCCTTCGTTCGGTTCTAGGTGTCCCAGCGCGTGGCCAGTTGGTAATTTCTCGCATCAGGATAGAGCGATAGGTGATCCTTCCACGGAAAAGGATTGCAGCTCAATAATGCTTGCTGACAAAAACCTAGCGATAAATTCTAGTAGCGAATCATCCTTCCATACGTATCAACGAGATGCCTGTTTTCCTGAAAGACCATCCACGGAAGAATACAGTGGGTTGGAATCGTTAGAAAGAATCAGGACAGGATACGGGAGATTGCAAGCAAATTGCTCGACGGAAAAGCCGATGGATGGAAGCATGGGAGAGTCGCGAGGCGAATTTTGCGGAAGAACGCGTGACGAGTGCCCCTACCTGAGCGGGATACCGTCGTCGTCCTTGCAGTGTCCCGCTAGTCGAACGAGGTCATCCGAGAGGTTCGATTACACCTCGCAGGTGACGGCGGGCGAGGATCTCAGCTGCAGCGAAAGTTGTTGTAGGTGGAAAACCTCCCGCAAACACGTGGCCAATCGTGTCACTGCATCGCCGTGGCGCCAGATCATCAGGCCTCATCATTCACCGAGGATGCCACGGTCGGCTGCCGTGCTACAACGTCATGTCGATGACGAAATCCAAAAGAAGCCCCTGACTCCGGAACCAACGCGATCCACAGTAATAGCGATCAGCCCGAAGGTCCATTCTCCGAGAAGCGACGGGCATTACGGTTTTGAAGTTTCTACCTGCGAAATGAGCCTTAATAGCGACTCGAGATCACGGACCGAGATAATAAGTAGTCCTGAAACGAAGATCCAAGAGACCTATCGATCTCCAGTTCCATTCGCATCCTCTAATCAAATCGCGCCACTTACAAACACACTGAGAAATGACGAACCGTCCCTCCAGACTAATAACACACTCACGCAGTTGCTGTCCGTCAGCAACGACAGCGTTATCACGAATACGAGTAGAAATAACGAATATTCGACACACATAGTGCCACACACGCCGACAAAACCCGAATTGTCGCATCCGATCAGTAGACTGTGCGATACGATCGAATCCGATGAGAAGAAGGAAACGAAGATAGAGATAGAAAGCGCGGAGAAGAATGACGAGGAGAGAATTGCGAGGATATTTGTTAATAGCGACGATAACAACAACGACGAGGCAATCGTCAGCACGGAAATAGTGCGTGGACGATCGGCCGACGATCACAGGTGCGATCAATGTGGGAAGACCTTCGTCACGAGAGCATCGCTCAAGACACATAGCCGAACGCACTCCGGCGAGAAGCCGTTTCGCTGCGCCGATTGCGGGAAGCAATTCTCGCAGCTGCGCAATTACAAGTACCATCGCAGCGTGCATGAGGGCACCCGGGAGTTTGCCGCCACTTGTCCGGAATGCGGCAAATACTTCAACGACCGTGGTTACCTGAGCTCGCACATGAAGATCCACCGGAACCGCAAGGAATACGGCTGCGCGGAATGCGGCAAGAGCTTCAACCAGCGAGTGGCCTACAATATGCACGTGCGTATACACACGGGCGTAAAGCCGCACCAGTGCGAGCAATGCGGCAAGGCGTTCTCGCGGAAGATGCTGCTGAAACAGCACCTGAGAACCCATTCCGGCGAGCGGCCGTACCAGTGCCAGGTCTGCCAGAAAGCGTTCGCTGATCGCTCCAACATGACCCTCCACACCAGACTGCACTCCGGCTTGAAACCCTACCAGTGTAACCTGTGCTCGAAAGCCTTCACCAAGAAGCACCATCTGAAGACCCACCTCAATTATCACACCGGCACTAAGCCGTACACTTGCACGAACTGCGGCAGCAGATTCTCGCAGAGTAGTAATATGAGGACCCATTTTAAGAAGTGCATCGTCAACAATGCCGCTGGAGTGACCAAGTCCGGCGACGAAGCCGGTGTCGAAAGCAGCATCACATCGCAGGTGGCTCTAACTCCGCCCAACTCCGATCAGGAGTCGAGCATCCTAACGCCAATCTCGAAGAGCGTTGCCGTGACGGAGAGCAACGCATAG
Protein Sequence: MMGEVIRVSGKASDVRDILKEAMLSQRFADVALCCPGGQRFLAHRLVLSAASPYLQEVLLAHSKVTAQCEPITVILAETEAPELAALLGFIYTGSVTIPRVRLNAFLHAAETLRIRLPPVPAMTICDEQDCKLEDVKEDVKISSKYLQCDRYSWGRSERPPYEDSLYRKDSCIRIFATDHNRDILRDTRMFHEVNNPGPSFGSRCPSAWPVGNFSHQDRAIGDPSTEKDCSSIMLADKNLAINSSSESSFHTYQRDACFPERPSTEEYSGLESLERIRTGYGRLQANCSTEKPMDGSMGESRGEFCGRTRDECPYLSGIPSSSLQCPASRTRSSERFDYTSQVTAGEDLSCSESCCRWKTSRKHVANRVTASPWRQIIRPHHSPRMPRSAAVLQRHVDDEIQKKPLTPEPTRSTVIAISPKVHSPRSDGHYGFEVSTCEMSLNSDSRSRTEIISSPETKIQETYRSPVPFASSNQIAPLTNTLRNDEPSLQTNNTLTQLLSVSNDSVITNTSRNNEYSTHIVPHTPTKPELSHPISRLCDTIESDEKKETKIEIESAEKNDEERIARIFVNSDDNNNDEAIVSTEIVRGRSADDHRCDQCGKTFVTRASLKTHSRTHSGEKPFRCADCGKQFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYGCAECGKSFNQRVAYNMHVRIHTGVKPHQCEQCGKAFSRKMLLKQHLRTHSGERPYQCQVCQKAFADRSNMTLHTRLHSGLKPYQCNLCSKAFTKKHHLKTHLNYHTGTKPYTCTNCGSRFSQSSNMRTHFKKCIVNNAAGVTKSGDEAGVESSITSQVALTPPNSDQESSILTPISKSVAVTESNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00898912;
90% Identity: iTF_00898912;
80% Identity: iTF_00898912;