Lhum008281.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- -
- Assembly
- GCA_000217595.1
- Location
- NW:622082-628567[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.3 19 5.3 7.6 2 23 328 350 327 350 0.97 2 19 0.15 9.1 6.3 4.8 1 23 402 424 402 424 0.97 3 19 0.13 8.4 6.4 0.8 1 23 473 495 473 495 0.98 4 19 0.04 2.5 8.1 0.4 1 20 549 568 549 570 0.92 5 19 8.2 5.1e+02 0.8 6.7 1 23 582 605 582 605 0.91 6 19 0.095 5.9 6.9 3.0 1 23 610 632 610 632 0.94 7 19 0.0003 0.019 14.7 2.1 1 23 664 686 664 686 0.97 8 19 0.00036 0.022 14.5 0.1 1 23 692 714 692 714 0.97 9 19 0.00012 0.0075 16.0 1.4 1 23 758 781 758 781 0.96 10 19 0.0012 0.076 12.8 0.9 1 23 787 810 787 810 0.96 11 19 1.4e-05 0.0009 18.9 1.3 2 23 819 841 818 841 0.97 12 19 0.00021 0.013 15.3 0.0 1 23 849 871 849 871 0.92 13 19 0.048 3 7.8 0.3 1 20 931 950 931 950 0.97 14 19 0.00043 0.027 14.3 0.2 2 23 970 991 969 991 0.96 15 19 8.4e-06 0.00052 19.6 1.2 1 23 1004 1026 1004 1026 0.97 16 19 0.00039 0.025 14.4 2.2 1 23 1048 1071 1048 1071 0.93 17 19 0.00017 0.011 15.5 0.3 2 23 1133 1155 1132 1155 0.95 18 19 0.0001 0.0063 16.2 2.5 1 23 1178 1201 1178 1201 0.93 19 19 0.0051 0.32 10.9 0.3 2 23 1301 1323 1301 1323 0.95
Sequence Information
- Coding Sequence
- ATGGACGAGGACGTGGTGGAGCTCGAGAGCGTGGAGGATGTCTGCCGGCTGTGCCTTTCCATCGATGAGCCGAGATCTTCAGTGTTCGCGGCGCACGAGCAAGAAGATTCTTCCTGTGTGACGCTGGTCGCCAAGATCCAAACCTGCCTCTCGATACAGatttccaCCAGTGATAAACTGTCGACACTAATATGTGCAAATTGCGCGAAAAATGTCAACGAATGGCACACCTACAAGGAGTCATGCTTGCGTTCACAGGACAAACTACAAGAATGGCTATCAAAACAGTCGCAACAAAATCCTACAATTGTAACGATCAAGGATGAACCAatggatattaattatgaGGACAATGTAGAGGTTATCTCAGAGACTACCAACAATCTGCAACAATTGCCAACTAAGACCACTGAggacaaaaaaattgaaaatactgAAGTTAATACTGAAGTTAATACTGAAGTTAATACTGAAGTTAGTACTGAAGTTGATACTGAAGTTGATACTGAAGTTGATACTGAAGTTAATACTGAAATTAATACAGAAgttaatatcgaaaaaatgCAAGAAGATCAAGAAGATCAAGAAGTGCAGGAAATGTCAAAAGTGTCAGAAGTGCCAGAAGTGTTAGAAGTATCAGATGACAGCGATAATAATGATGGAAATGATGCAAAAGACGAACAAAAAGACACCGAAACAGTTCCATCtacagaagagaaagagacggacCAGAAAGATCCTTTAGCCTTATGTTCCATTAAAGTTGAGCCACAGGACGACGATGACACCGATGGCACTATAGAAGTAGAATCTGCGAATGGCAGTGAATTATTATCAAGTCCTTTAGCGGCCAGCGAGAAAGAAGACACAATTATGGAGGCCGATTCGACGCAAAAATCGAGCGCGGCCGGTTCATCGCCTAAGAAGAAACTGAGACGCGGTCCTCACACTCATTTCAGAGGAACGCGCGTCTTCAAGCAGAAATGCACGCACTGTCAGATCTTCCTGCATTCTAAATATTCATTTCTGAAGCACATGAAAAGGTTCCACAGTAAGGAGAACGGCGGCGAGAATTCGGCACTGATGTCGCCGAATGACGTTGAAGAAGAAATGGTGGAAGACCTGGAGGAGGAACTGGTCACCATGGAGAAGGATTCGCCACTGACGGAGGTGCAACAGGAAATTATCAGCCAATTGAAAACTTTCTGTTGTTACACGTGCGAGCAGACATTTAACGATCGGCGCACCACTCTCTCCCACATACGTCAACACTTGCCAGACCTGAGGCCTTACACGTGCATCGCCTGCCTAACGGAATTTTCCGATCGATCGATGTATCAGTCACATTGCGGGGCATCTTTCGAGTGCGCCATGAAGATTGCACTGGTTGTACCGAAGCACGGCTACGAGCGTTACTTCACGTGCAATATGTGCATGCGCCCGTTGCAGAACAGAAAGGAGCTGCTCAGTCACTTGCTGAAGCATTCCGACAAGCAATACGAGGAGATGATATCGCCGGCGCGCACGCCGCCCAAGCTGAAGCCTATGGCGCCGTTGCCGTCGACAACGAGAAACGACAGTTCCGACAATAAAGCGCGGAAAGCCGCCCGCGGGCCTTACAAGAACGGCGATCCGGCGCACAACCACGCCTGCGATCTGTGCGGCATGATTTACAGATACCGGCCGAACATGTTCAAGCACAGGGAATACTGCGAGCGGCTGACACTGGATAGAAGAACGATGTACAAGTGCGCGCACTGCAACATGACGTTCCTTCAATTCAAGAAGTTCCACAGTCACACTACGGTGCAGCACAAGAAGAAGGAGTTCACTTGCATCACGTGCGACTCCAAGTTCCGGTCGCCCAGCGACTTCCTGACTCATCACGAGAAACATCGCGCGATACCGGGCGGCAGTTCGCAGGCGCAAGGCGACAACATGCAGATTCAGAGCTCGAGCCAAGCGAAATCGAGAATTGTCGGTAACAAGTACTCCTGTTTTCTCTGCAACCAGCAATTCACCACGAAAAACGAGCTGAACGAGCACCGAAATCTTCATCTTAAAGTGAAGATATATTCGTGCGTGATTTGCCGCAGCATGTTCAGCAGCTCCGGCGCCTTGGAGATCCACATGAAGGATCACGGCATCGAGGATCCGAACGAGCGGAACGCCAACATCTCCTGCATGGAATACGGCAGTCTGGAGGGGGACGTGAGGATCGAGAATGATTTGATCAACGCCACCGCCGTCTCGGATCCCGGCACACAGGTCCACGAGTGCTGCGAGTGCGGCAAGGTATTGTCCAGCTATCCCAATCTCCGACGACACGCCAAAATCGCGCACCGGAACACCAAGATTTACGACTGCGTCGAGTGCTCGAAAATGTTCACGCGCACGGACTTGTACGACTATCACATGCAAGTGAAGCACAATGTTACTTCGAAAAACATGATCCAGTGCTCGCAGTGTCCCAAGAGTTTCGTTTTCCAATCGAATTTCACTTATCACTTCCGCACTGCCCATCTCGAGAAGTCGCAGAACGGTTATGCGTGCGACATCTGCGGCAAGGTTTTCGTCGAAGAGGCGTCTCTGAAGATACATAAGGGCTGGCACAATCGCGCCAACTCGCGTCTCAGCACTCGACATATACTGGGCAATCAGAAGACACCTAGTAACGTGCCGAATGACTCGAGCAACATCGAGTTGGGTGAAAATTCAGAACGGCCGGCGAGAGCACGAAAGTCCTTCCCCAATGCTCCGCTCCAATCACCGCCGAAGTCATTGGGGAATTTTCAGTGTCAGGTGTGCAATGACAAATTCAACGACGTTACGGAGCTGAGGAATCATCTGTGGGACGTCCACTGCGCTCGCAACAAGCAGGAAAAGAGTTTCTCCAACGACGAGCTTCAGTGCGAACTCTGCACGAACGTTTTCCCCGATCGAAAGACTCTGGAGTCGCACATGCAGTGGCACAAGGCCAATCCTATTCTCAGCGACATGCGAAAGATGTTCAATTGCGAGATATGCGGCAAGTCTTACAGTTCGAAGAAAGTTTTGTGGAAGCACAAGAGGCTGCACAAGGCCACCGTCGTGGCCTCTCTCAAATTTCAGTCCTTAGCCAGGAAGACGACGGCCAGCCAGTTCCTGTGTACGTTCTGTCGCAAGGTCTTCGCGAGCAGCCAATCCCTGCAGCGGCATAAACTCAGCTTCCACAGCGATCCGCTGCAACGCGCCCAGCAACAGTTGTACAACAGCAATCGAAGATTCTTGCCCGAGGACAACAGCGGTTTTGAGCCGAGGTTGAAGCGTCCGAAGTTGGACACGAGCAACGACAATCTACCGTCTAAGCTTCCGCCCTTCGCCATGAACTTCGCCGGCGAGAAGAAGAAGGCGGTTATGTGCGATGTGTGCAACAAAGGCTTCTCCAGCATGAGCGCGCTGTACAAGCACAAGCAGAGCGCGCACAAGAATCAAACGGATAAAGATCCGAGGATACCCGAATGCATACCGATGTCGACCCGAGACGGCAAGTTCTCGTGCAATGTCTGCTTCAAGAAGTTCCCGCGTCTGTCGAATTTGCGACAGCACTTCACGATCAAGCACAAAAAGACCGCCGGCAGTCCGGCCAAGTCCGGCAGCGGTTCAGCACCGAACAACGGCGGACTGTCCTTCCCGATCGAACGGCCGGATCGACCGGAACAACGGCCGAGGGAACAGGAGCCGTTGATAAACAACGTGTTGTACAGCTGCAAACTGTGCAAGCAGTGTCACGTCTTCAGTAGAGAGAACATTATAAGCCATATCACCAACGTGCACAACGCCGTGTACCAAATCGACAGCAAGATGTTCCACAGGGAGACCGATCTAAGCACTTACGTGGTGCACGACGCAATTGGGGCCGTCTGTCCGCGATGCAACGTCAAGTATCCTAATAACAAGGCTTTGAAGATACATTACATCAAGTTCCACGAGAACGCCGATTAA
- Protein Sequence
- MDEDVVELESVEDVCRLCLSIDEPRSSVFAAHEQEDSSCVTLVAKIQTCLSIQISTSDKLSTLICANCAKNVNEWHTYKESCLRSQDKLQEWLSKQSQQNPTIVTIKDEPMDINYEDNVEVISETTNNLQQLPTKTTEDKKIENTEVNTEVNTEVNTEVSTEVDTEVDTEVDTEVNTEINTEVNIEKMQEDQEDQEVQEMSKVSEVPEVLEVSDDSDNNDGNDAKDEQKDTETVPSTEEKETDQKDPLALCSIKVEPQDDDDTDGTIEVESANGSELLSSPLAASEKEDTIMEADSTQKSSAAGSSPKKKLRRGPHTHFRGTRVFKQKCTHCQIFLHSKYSFLKHMKRFHSKENGGENSALMSPNDVEEEMVEDLEEELVTMEKDSPLTEVQQEIISQLKTFCCYTCEQTFNDRRTTLSHIRQHLPDLRPYTCIACLTEFSDRSMYQSHCGASFECAMKIALVVPKHGYERYFTCNMCMRPLQNRKELLSHLLKHSDKQYEEMISPARTPPKLKPMAPLPSTTRNDSSDNKARKAARGPYKNGDPAHNHACDLCGMIYRYRPNMFKHREYCERLTLDRRTMYKCAHCNMTFLQFKKFHSHTTVQHKKKEFTCITCDSKFRSPSDFLTHHEKHRAIPGGSSQAQGDNMQIQSSSQAKSRIVGNKYSCFLCNQQFTTKNELNEHRNLHLKVKIYSCVICRSMFSSSGALEIHMKDHGIEDPNERNANISCMEYGSLEGDVRIENDLINATAVSDPGTQVHECCECGKVLSSYPNLRRHAKIAHRNTKIYDCVECSKMFTRTDLYDYHMQVKHNVTSKNMIQCSQCPKSFVFQSNFTYHFRTAHLEKSQNGYACDICGKVFVEEASLKIHKGWHNRANSRLSTRHILGNQKTPSNVPNDSSNIELGENSERPARARKSFPNAPLQSPPKSLGNFQCQVCNDKFNDVTELRNHLWDVHCARNKQEKSFSNDELQCELCTNVFPDRKTLESHMQWHKANPILSDMRKMFNCEICGKSYSSKKVLWKHKRLHKATVVASLKFQSLARKTTASQFLCTFCRKVFASSQSLQRHKLSFHSDPLQRAQQQLYNSNRRFLPEDNSGFEPRLKRPKLDTSNDNLPSKLPPFAMNFAGEKKKAVMCDVCNKGFSSMSALYKHKQSAHKNQTDKDPRIPECIPMSTRDGKFSCNVCFKKFPRLSNLRQHFTIKHKKTAGSPAKSGSGSAPNNGGLSFPIERPDRPEQRPREQEPLINNVLYSCKLCKQCHVFSRENIISHITNVHNAVYQIDSKMFHRETDLSTYVVHDAIGAVCPRCNVKYPNNKALKIHYIKFHENAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -