Lhum000870.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- -
- Assembly
- GCA_000217595.1
- Location
- NW:15762-34820[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.6e-05 0.0022 17.7 0.3 2 23 675 696 674 696 0.97 2 17 0.061 3.8 7.5 0.9 1 19 702 720 702 721 0.90 3 17 1 63 3.6 1.0 2 23 729 750 728 750 0.94 4 17 4.8e-05 0.003 17.3 1.1 3 23 759 780 758 780 0.98 5 17 0.0034 0.21 11.4 1.3 1 23 787 810 787 810 0.94 6 17 6.6e-05 0.0042 16.8 0.7 1 23 816 839 816 839 0.94 7 17 1.2 75 3.4 1.1 2 23 847 867 847 867 0.90 8 17 9.8e-08 6.1e-06 25.7 2.1 2 23 873 894 872 894 0.97 9 17 1.6e-06 9.8e-05 21.9 0.2 1 23 900 922 900 922 0.99 10 17 0.00044 0.028 14.2 2.6 2 23 934 956 933 956 0.95 11 17 0.0055 0.35 10.8 2.5 1 23 962 985 962 985 0.96 12 17 0.0084 0.53 10.2 3.0 2 23 1006 1028 1005 1028 0.95 13 17 0.0003 0.019 14.8 1.9 2 23 1035 1057 1034 1057 0.96 14 17 9.2e-05 0.0058 16.4 0.4 2 23 1065 1086 1064 1086 0.96 15 17 0.00085 0.053 13.3 2.3 1 23 1092 1115 1092 1115 0.96 16 17 0.23 14 5.7 3.2 2 23 1122 1143 1121 1143 0.96 17 17 0.0018 0.12 12.3 2.0 1 23 1149 1171 1149 1171 0.99
Sequence Information
- Coding Sequence
- atgTCAAATTCTGAAATCAACAAGAGTGACCACAATTATAGCGAGTCAGAATATTCTCAACATATACCTAGTGTCGACAGTGACACTATCAATAGCGGATCTATGATGACGATGCCTATTGTGGGCCAGATTAAAGACATCGATCAATTGAAAAAGATTGCACCACGTGTTCGCTTACAGGACACCAAGCGTTTAAACGAATTGGCAAAGATCTCGTCCTTAAGCAATAACAACGACAAGACACAACAGAGCAAAGCATCCACTCCCAAGACAACTGCGCAAGAATTGAAGAAATACTGCCGCACCTGTGCTGGCTTAAAAGTGCCTCtgGTGGATATCTTTGGTGAGAAGGGTATTCAAATGCGGTTGAGCCAACAGATCCGGCATCTTAAAGTAATTCATCCTTATGATAATCTTTCTACACAAATGTGCATGGACTGTATTTGTGATCTTAAAATGAGTTACAAATTCttcatgcaaataaaaaaagccgAGATGAAATTAAAGTCGATGCAGGTCAACTTGACAACTAAAGATATGGAAATAGAACTGATCAATGAATCTTCACCAACAAAACGGGAAGAGCAATCATCTTGCTCAGgaaaggaaagtGCAACATCCTACGGAAATCAGGAAAATTTCCACTCTTCAGAAGCGAAGCAGGAATCTCCCATGATCCAACAAAATCGCTCTTTATCACCATCAACAAAGCAAGAAAACCAATTAGACTTAGGAAACCAAAAAGATGTTCCTAAGATCTGCGCCATTTTCtcattaaacaataaatcgaAAGTCGATTCCGAAGAAACAGAAGATGTACAGACGGGCGGTGGAATTTTCGAAGAAATGATAGAAGGAGAAGATGAAGAATCTATCGAAGAATTTGATCCTGAGGATCCAGCTTTCCAAGAAGATGAAGAAGAGTCTGAGAAGTCATCGGCGGCCGTGTATAAGTACGACATGATGGCGAAGTCTTACGTGAGGATGGATGAAAGCGAGGCGGTTTCCATGAAGTCTACAGTCTCTCAGATATCAGAAAGTGAGGGAGAAAAAGATGGAGTGAGACAACCGAATATATTGAAGAGAAGACTACTGATGCCATCAATGGTGACAAAAAGTAGAGGGGAAGATGAAGTGCAAAGCGGAATTGAAAGCAGCCCGAAAGACTGTAAAGTGCAAAAGCTAGACTTGAACAATCCATTGAATGTGAATAGCACTCCAGAAGAGGACGGAATTATGTATGTGACCGTGAAGGGATCCAAACCGAATGAGATTCTGCTAGTAAAGgttaaaaagatggaaaaatcTTTGGAAACAAAACGCTCGGTAGCTTCCGCCGATGTCAAGCCTGTCGAACGTATTCTCAAACGTTACGATACGTTGACATCAAAAGACTACTCATCTCGACGTTCGGACGCTCGTGAGCAAATAATTGAGGAACAAAtcgaagaatataaaaagaaacgagaaaaGATTTTTGGAGATAAGTCAGTATTGAATTTTACCCCAAATGACTCACGAAAAGAGACACAGGAAGAAGAAATTTCTATCAAGATAGATCctgaaaaaatagaagaagaaCCGATTATTTTGCAggaagaaaatgaagaaaaagaggaTGAAAAGATAGATATAGACGAAATACTGATCGAAGATAAGGAAACTGAGAAAATAAACGACGATACGGAGGAAGACTTCTCAAAATTATCAAGATTGAAGTTGAAATTAGTTTCGGAAGAAACAAAGCGAAAGAAGGAAAGTTTACAGAAAGAGTTGGACGAATCATATAATGAAGGAAAATTGGAGAAATTGGTGAGGATTCTGGGAGAAGATAAGAATCTACAGgAATTTCAGGACTATTTAAAGCAACGCAAAATTGTCCTTACCCGCCTCAAAGACGAAGACGTAATTTCCCTTTATGAAGATCATTTCTCTACCAGCTTGAAATCATCTTCTAAACTTCTCCCGGATTTTATAGAGACTTCATTACTTACCGATCCTTTTGTTGAGGAGCGCTATTTAGAGTGCGATTACTGTTTGGAAACCTTTACCAACAGCGATACTCTCGAAGAACATTTGAAATCTCATGACTATCGCATGCTTCACTATTGCGAGGACTGCGGAGAAGAGTTTCCGACCaataaaggaaagaaaagtCACAATGTTATTTGcgtgagaaaattaatttgcaaatattgcgACATAATTTTAGATTCTAGAAGAAAAAAGCGTCAACACGAACAAAAACATATTGATGCCCTCTACGGTCAACTTTGTGAAGTTTGCGGGGAAAGATTTAAGCATCAGGGAACTTTGGACCAGCATATAAAAACACAACATACGACTTTAGAGAAGATTTATCAATGTCCAAAATgtccaaaaaaatttgctttaaaacaaaagctgagttttcatttaaaatcgGTTCACACAACTTTAAGAGCGTATCTTTGCGAGGATTGCGGCGCAGATTTTAAGAATCCTGCAAGTTTGAGGCATCACAGAATCAGGAAACACCAACCGGTTGGAAATAAGAGGGAATGTCCGGTTTGCAGAAAATTGGTGCCGTTTTACAGTTTGTCCAAACATATGCACACACACAAAGCTTACAGCATCCAGTGTCCGCACTGCGACAAAATGTTCAAGAACAGTTCAACTTTGAAGCAACACGTTAGGATTCACGAGGATCAAAGACAATATCGTTGCGACACTTGCGGCGTTGGGTTTAATCGCAGAGACGGTTTGCGATTGCACATGAGAGTACATGAGAAAACGGGTAGCAGAGGATTGAAGGAGTGCTCTTGCCAAGTTTGCGGAGAAAAATTCCCGAATCATTCTACCTTAGTGATTCATCGGAACAGAGAGCACAAAGACGGAAGACAGTACACATGCCACATTTGTAACAGATCAATGATCTCGACAAGATCACTTGAATGGCACATGTCGCATATTCATAACGAGTCAATGCCAGGTATTACTCGCGATGAATCCGGTTTGCACGATAAAAGACGTGTTTCTTGCTACCActgtaataaaactttcaagaCGGAAATGATCTTGCGCACGCATATTAAGAACACGCACATGGAAAAGGATCCAATGAAGTGTACTGATTGCGATTCATCTTTTACGTCTGAAGTACGTTTACGCCATCACATGATGATCACACACAACCGTCTCGAGGGCACCTTAGAGTGTCCTCGCTGTCCGAAACGATTCGTGAATCAGTTGAGGCTGAAAACTCACATGATTTCTCATTCTGAGGAAAGACCATATACTTGTGAGATATGTGGCTTTAATTTAAAGACAAAGATACAATTAATCAAGCACCATCAAAATAGACACAGCAACGAGAGACCCTTGCAGTGCAGGTATTGTCCTTGGCGATGCAAGCAAGTGAGTGCTCTTGTCTGCCACGAGCGTACGCACACTAACGAACGTCCATACACGTGCAGCGTATGCGAACAGCGTTTTAAGTATCTTGGTGACAAAAATAAGCATGAGCGGCGCCACGAAAGCCTTGGTGGTTCAGGCTTCAAACGCATAGTacatgaaagaaatattaaaccgAAAGTACGTACCGAAGAGTCCTCTGGATCAGAACAAGAGGAATCGGTTAAGGATATAAATCAGCACGACATCCACCAGGAGGTTGCTGAAGATCAAGAAGATCAGGAGCAGATAGTGAAGTTTGAAAGCCAGGAAGAATATGAACAAGTGTACGAGCAGGAATACGAAGAAACTTCGAGAGAAGCATCTGAAGCTACAGAGGTGATCATGAATATGGAGGATTCCAATGTATACACAGAAGAAGTAACGGCCGACAACATAGAATCTGGCACGGAGATCATCGCAAACGAGATCATAACGAATGACATTCTGCAATCTGGTGCCGCTGTGATGCATCTGCAGCGACAGGACAATTCCGGGAAGATTCAAGTGATACCAGTAATGTTGTCGTTACCCGATCTGTCCGACGCAAATGCTGAGGTTAACCTTGCAACCGCATCCATCATGTACAATAATTAg
- Protein Sequence
- MSNSEINKSDHNYSESEYSQHIPSVDSDTINSGSMMTMPIVGQIKDIDQLKKIAPRVRLQDTKRLNELAKISSLSNNNDKTQQSKASTPKTTAQELKKYCRTCAGLKVPLVDIFGEKGIQMRLSQQIRHLKVIHPYDNLSTQMCMDCICDLKMSYKFFMQIKKAEMKLKSMQVNLTTKDMEIELINESSPTKREEQSSCSGKESATSYGNQENFHSSEAKQESPMIQQNRSLSPSTKQENQLDLGNQKDVPKICAIFSLNNKSKVDSEETEDVQTGGGIFEEMIEGEDEESIEEFDPEDPAFQEDEEESEKSSAAVYKYDMMAKSYVRMDESEAVSMKSTVSQISESEGEKDGVRQPNILKRRLLMPSMVTKSRGEDEVQSGIESSPKDCKVQKLDLNNPLNVNSTPEEDGIMYVTVKGSKPNEILLVKVKKMEKSLETKRSVASADVKPVERILKRYDTLTSKDYSSRRSDAREQIIEEQIEEYKKKREKIFGDKSVLNFTPNDSRKETQEEEISIKIDPEKIEEEPIILQEENEEKEDEKIDIDEILIEDKETEKINDDTEEDFSKLSRLKLKLVSEETKRKKESLQKELDESYNEGKLEKLVRILGEDKNLQEFQDYLKQRKIVLTRLKDEDVISLYEDHFSTSLKSSSKLLPDFIETSLLTDPFVEERYLECDYCLETFTNSDTLEEHLKSHDYRMLHYCEDCGEEFPTNKGKKSHNVICVRKLICKYCDIILDSRRKKRQHEQKHIDALYGQLCEVCGERFKHQGTLDQHIKTQHTTLEKIYQCPKCPKKFALKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCRKLVPFYSLSKHMHTHKAYSIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTGSRGLKECSCQVCGEKFPNHSTLVIHRNREHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESMPGITRDESGLHDKRRVSCYHCNKTFKTEMILRTHIKNTHMEKDPMKCTDCDSSFTSEVRLRHHMMITHNRLEGTLECPRCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSNERPLQCRYCPWRCKQVSALVCHERTHTNERPYTCSVCEQRFKYLGDKNKHERRHESLGGSGFKRIVHERNIKPKVRTEESSGSEQEESVKDINQHDIHQEVAEDQEDQEQIVKFESQEEYEQVYEQEYEETSREASEATEVIMNMEDSNVYTEEVTADNIESGTEIIANEIITNDILQSGAAVMHLQRQDNSGKIQVIPVMLSLPDLSDANAEVNLATASIMYNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -