Lhum009847.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Linepithema humile
Gene Symbol
-
Assembly
GCA_000217595.1
Location
NW:93773-97177[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.5e-05 0.00093 18.9 1.1 3 23 273 293 271 293 0.97
2 12 0.48 30 4.7 2.7 1 23 298 320 298 320 0.84
3 12 7.1e-05 0.0044 16.7 1.4 3 23 331 351 330 351 0.98
4 12 0.00014 0.009 15.7 6.4 1 23 437 459 437 459 0.97
5 12 0.00037 0.023 14.5 2.8 1 22 464 485 464 488 0.91
6 12 2.5e-06 0.00016 21.3 0.5 1 23 527 550 527 550 0.93
7 12 2.4e-06 0.00015 21.4 0.8 1 23 583 605 583 605 0.99
8 12 0.00013 0.008 15.9 4.0 1 23 619 641 619 641 0.96
9 12 0.00012 0.0075 16.0 4.7 1 23 647 669 647 669 0.98
10 12 0.00012 0.0078 15.9 2.1 1 23 675 697 675 697 0.98
11 12 3.7e-05 0.0023 17.6 6.5 1 23 703 725 703 725 0.98
12 12 0.00017 0.011 15.5 0.3 1 21 731 751 731 752 0.93

Sequence Information

Coding Sequence
ATGCAGGTCTCGGACGAAATGTTGACGCAGGCAAATCAAGACAACAGTCTTTGCCGCGTCTGTCTAACTGTGGATTACAACAACCAATACATCTTCCGCAAGAATTGGAATGATTCAGATAATACGAGTACCCCTGAGTTGTCAGAGAAACTGCAGTTATGTGGAGGAATAGAGGTGTTGGAGGAGGATGGTTTGCCTACTAGCATATGCATCAAGTGTGTgatgaaaattaatgttgcTTATGAATTAAGGGAACAGTGTCAAAGAGCGGACACTGAACTTAGGAGGCTTTATGGGAAAACGTTGGCaactttgaagaaaaatgttggcaattatatttacacaaaaGATCAGTACTGTCAAACTGAGCAGTTTTGCACCTTGGATATAATCAAATCAGAAGATAATATAGAGTTAACTGtggataatgaaattaatacagAGAAGAATATCCTTGCAACAGAATCAAAGAGCATCAAGGGATGTAAACTTTCGGATACTTTCAATCAAATGAGACACACAGAAGACACTCTAATAGACAATGAACCAGATTTAGACTGTGTTAATAAATCTAAACAAGTAGAACGTgagaaagtaattaaaaaagaagctTATAGAACGAGAAGACTAGCTATGTTTAAAAGAGTAACATCTATAGAAACTTTGAAGAGTCATAAAGAAAGGCAAAGAAGATATATCAAGAAGAATGCGAGCATCAAACGCGATACGAGTGACAGTGAATATCAAACAAAAGTGAGAAATATTCATAGAGCGGAAGAAACTTCTGAACTCGCATTACAACATATAACACTCGCATGTccaaaatgtgataaattttatttcagtaaaaaatcTTTAGATAGACACATGTTGACTCATAATCATAAAGAGTTTAAATGCGACAACTGTGATAAGCAATTCCTTTGTTTGGACAAGTTACTTAAGCACGTTAATCTGCATAAAACGAAGGAGAAGCCGAAGCCGGTGTTGTGCAAAATCtgtaacaaaagttttagaaaAACCGATACTATGGTTAGACACTTGAATGTTCATAAGAAAGCAAATCCTAAAGAAGTTTTCTCTATACTGAAAGAGATACGTGACAAGAGAAGATTAGAAAACAACCAGGAGTCTTGTGAGATAAATAAAGATGAAGAAACGATGTATGACGAAAAATCGCATGGAGAAAACGACGGTATGACGAGAGAACTGAGAAAACGTAATGCAAAAGTGGAACAAAGGGATTCAGATTTGGCAAATAGCGATTCCAGCAGTGACAAATTTGAGCCATTCGATGACACAACGCTTTTTCACTGCAAACATTGCAGCAAACGTTATTCTACCGAAAGATCTCTTCAGCGTCATTTGTTAGTACACGATGAAAAGAAATTCGTCTGTCACGTCTGCAACATGAAATTTTTCCGACAGGACAGGCTTAAGAGTCACATGGATCGGTACGGTCACGATGAGACTAAGATGTGTACGGAGCCGCAGAAACCGCCCGATGACAAATCCgctatcaaattaataaacagcTGGATAAGGGAAGAATTGGATTCTGATAACGAAGGCAAAGGCTTCCCTTGTACAATCTGCGGAAAATCGTACGCCACAAAGAAGTCCCTATTGAAGCACCAAGTGAATATGCATGGCGGACAGGACGAGTATTGTGCAAGTTGCGGTAGCGAGTGTACCTGCGCGgacaaatacaaaaatcaaGAGAAGAGCAACGAAAAGTCAAAGCCATACACATGCGAGGAATGTAACAAGTCCTTTGAGAAGGAAATCAAATTACAGCGACACGTGCGCATTCATGAGCGTGCTAAGGAACAGCAGGATGCGAACTTCAAGCGTTTCCTCTGCCACATATGCAGCAAAACGTTCCGGCAGAACACCGGCCTTATGTTTCACATGAGAACGCATACGGGTTACAAACCACACGTTTGCAAGTACTGCGGTCGCGGTTTCACATCCAATTCGAACTGCATCAATCACGAGAGAACGCACACTGGCGATCGGCCGTTCGTCTGTCAGTACTGCAGTGCATCGTTCGCCAAGTCATGCACCCTTAAAGCACACATCACCACGCATACTGGCGAGGCGAATTACCATTGTAAGACCTGCGGCAAGTCATTCCGGCGGCTCAAGTATCTCAAGGAGCACCGATTCACACATACAGGCGAGAAACCATACGCTTGCAAGATCTGCGGCACTGCGTACAGTCACTCCGGCAGTCTGTTCGTACACGAGAAAAAATGTAAGGCGCAATACAGCAATTATCAGACGGGACCAGCGCAAAATCTACAGCAGACTCCCTATCAATCTCCGCAGACCACCGGCGGAATTTCCACGACACCGTCTTCCTCGGTTATCACTCCTATCATCACCACACTGCCTCAGGGTCATCTGAACGTCATTAACAGCGCTCTGAATACGCAGACGAACAAGGAATACATAGACAACATCCAACGAATGAATGCACATGCAACGGCCACGGCCGTTTCATCGGGTCTACATTCAAACACCGATATACATCATAATCCCGAAATGAGTTCCGTCCGGAACTTCGCCATCATCGGACAAATGTTTCACACATAG
Protein Sequence
MQVSDEMLTQANQDNSLCRVCLTVDYNNQYIFRKNWNDSDNTSTPELSEKLQLCGGIEVLEEDGLPTSICIKCVMKINVAYELREQCQRADTELRRLYGKTLATLKKNVGNYIYTKDQYCQTEQFCTLDIIKSEDNIELTVDNEINTEKNILATESKSIKGCKLSDTFNQMRHTEDTLIDNEPDLDCVNKSKQVEREKVIKKEAYRTRRLAMFKRVTSIETLKSHKERQRRYIKKNASIKRDTSDSEYQTKVRNIHRAEETSELALQHITLACPKCDKFYFSKKSLDRHMLTHNHKEFKCDNCDKQFLCLDKLLKHVNLHKTKEKPKPVLCKICNKSFRKTDTMVRHLNVHKKANPKEVFSILKEIRDKRRLENNQESCEINKDEETMYDEKSHGENDGMTRELRKRNAKVEQRDSDLANSDSSSDKFEPFDDTTLFHCKHCSKRYSTERSLQRHLLVHDEKKFVCHVCNMKFFRQDRLKSHMDRYGHDETKMCTEPQKPPDDKSAIKLINSWIREELDSDNEGKGFPCTICGKSYATKKSLLKHQVNMHGGQDEYCASCGSECTCADKYKNQEKSNEKSKPYTCEECNKSFEKEIKLQRHVRIHERAKEQQDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCQYCSASFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYSNYQTGPAQNLQQTPYQSPQTTGGISTTPSSSVITPIITTLPQGHLNVINSALNTQTNKEYIDNIQRMNAHATATAVSSGLHSNTDIHHNPEMSSVRNFAIIGQMFHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-