Lhum010012.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- -
- Assembly
- GCA_000217595.1
- Location
- NW:2392307-2396419[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.4e-05 0.0021 17.7 1.3 1 23 30 53 30 53 0.98 2 10 3e-05 0.0019 17.9 0.4 3 23 61 81 59 81 0.97 3 10 0.00018 0.011 15.4 5.3 1 23 87 109 87 109 0.95 4 10 1.9e-06 0.00012 21.6 0.5 1 23 115 138 115 138 0.97 5 10 9.1e-07 5.7e-05 22.7 1.5 1 23 784 806 784 806 0.97 6 10 0.00022 0.014 15.2 1.0 1 23 813 836 813 836 0.94 7 10 1.9e-05 0.0012 18.5 0.1 1 23 844 867 844 867 0.97 8 10 0.00012 0.0077 16.0 7.3 1 23 873 895 873 895 0.98 9 10 1.6e-05 0.001 18.8 5.3 1 23 901 923 901 923 0.99 10 10 1.5e-07 9.5e-06 25.1 0.9 1 23 929 951 929 951 0.98
Sequence Information
- Coding Sequence
- atggaaataaataCGTTAATCAATATGAATATGCAAGAAAAGAATTCAGTAAAACTACAGGGCACTCGTCATAACacactgaaaatttttaaatgcccTCAATGTGGCTCAACCTTTGATCGTGCTTCACAATTGGGCTATCATCATCGAAGTATTCATTTAGGAGAAAGGTCTCAAATTTGCCAAATATGTGAGAAGGGTTTCTTTCGTAAGGCAGATTTACGTACCCATTTAAACATCCATCTGGgtacaaattttcatatttgtgaGGTCTGTGGAAGAAAGTTTAGTCACATATCGAATCTTATAAGACATTGCAGAATGCATACAGGAATTAAACCATATTCATGTGTAATTTGTGATAAACGGTTCACACAAATTTCTTCATTAGCAAGACATAGACAAATGATACATGGAATACCAAAGGAAACCATGAACCAGTATTGTAATCCTAGTCTTATCAACAATAAATCACAAGTCACTAATCATGCATTAAAAGAGAACAAGacaatagataataatatagaaagtAGATATGAGATTTATATGGAACCAAAATGTCTCAATCAGACTAGAGATTCagatgtacaaaaaaatgacataatttttaatcaacacAATAACGATATGGACAATAAAGCATCTTTGCAGACTGGTATTTACATCACATCTAAGCAGGAcaatttaatggaaaatgaGAGTACAAATCGATTGCCACAAGCAACTCATATTGCTGAGATTGAAGAAAGACTTGGATCTACTGATTTACCGATAAATAAAACTGTCGTTTCAAATTCTCCTCAAAATATAGTTAATAATCATGAACAGATACAATCCAAAGACAACATAAGTTATTTACATCaattagacaaaaataattttacctttCTACCACGAGATAGAGGAcctaatattgaattaaacactcaaaacgatgaaaatattttaagatcgAGTGACTCGGATATGTGTATAGTTCACGGAACTTGTAAAGAAACTTCTACAAACGATATAAAGAAACCATTAAATACGGATACAAATTTGCAAACTTGCAATTCTAATGAAGTTTCAGCAAACCAAAAATTTCTGCATAAGCAAATAAGTACGgaagatattattaatgaaaataggaaatacaataaattgttaagTGATGATGACAATCAATTATACATAGAGCTTTCTGACTCGGGAATGTTGAAATTCGATGACTCTCGATACTGTAATAATACAGATTCAGTCAGTATGAATCTCAGTCATACAATAAAATCCCAATCTTCTACTGTTGCTAATGACGTAATATATGCTCCTGTTGATATGCAAAATCAGGACAACTTGTTGCAGAATGAGGAGAATTTAGAGAATTTCAATAACTTGAGTAACATAGTGTTAAATAATGAAGAGCCAATGTTGCGTTTGGTGCAGACGGATACTGGCGAGCAATTTTATGAAttcataatgaataatttggtGGAAAAAATGCAGAACGCTTCGTGCATAAAGGATTTGGAGAATAAGGTTGAGGAACCATCAAATACTTTTAGATATTGTCCAAAAATGGAGCTAAGTCCTAAAGAAAGTAATGAAAAAAGCGATCAGAGCGAACAGATAGAGCATCAGCAAGCTTTGGAAAGCCTCACCGATATAAATAACGAATTTAATTACACACAACTTGATTTTCATggagaagaaaagaatttcacTGCCCTGTGCCACGACgaatctgaaaatttccagCAAAACTCGAAAGATGACGAATGTGCGGAtaacattgaagaaaaaagtatgcaaGCCTACAATTCTGCGAATCtggaattattggaaaacgAATCGCACGTGGATTTTGACAAATACGTCGAAACAAATCTCGAAGCGCTTGACAAActgaattatgaaaattgcaaTGAGAGATTTTTGGAGTTCGTGGAAGTTGCTGATATCGGTATAGAATCCTCAGGATTCAAGGAATCTTCAATGATACGTTTAATTCAAAGCGACGGTGAACAATTATTAGAACTGTTGCAAGATTCTCAAATTGCTGAACAGGAATCGAATCAAGATTTCTTAGAAGCCAATAATCTCGACAAAGACTGTTCAAATGTTTTGCAAGATAGCAATAAAATAGTCGATTGTccgaaaaataaatcagatttCTTCACATATGTCGAGGATAATGTGCTATTagaggaaaatataaatcataatcaGGGCATAGAGAATAACGAAGAGCGCGTAGACAGCAATGACTTGTACGCGGATATAATGACTAGTGAAAGTACAAGTAACAAGAAATGCGTTAAAACATCAGAGGAGCCGAAGAAGTTGAAGACGAAAGACACTACGAAAAAGTTTCAATGTACCGAATGCAAAAAAGCATTCTCGACATCGTACAACTACAAACAGCACATCGGTATACATTTTACGGATCAGCAAAAATTTCATTGCAAGGATTGTGGAGTATCCTTCGCTTGGAAATCCACCTTGAACAAGCACATTGCGAATAATCATAGTTCAGACGGGCCGCAGAAGTTTGTTTGCGAGATTTGCCCGAAGGTTTACAGCACCTTATCGCAAGTAAACGAGCATGTAAAAAGAGACCATCTGAAGCAGCGCAATCACGTTTGTTCACATTGCGGTAAgtcttttttcaaaagattCGATCTGAAGACTCACAGTAGAACGCATACGAACGAACGTCCGTACGTGTGCGGTATCTGTGGCAAAAGGTTTCATCATCAGAGCCACATCATTCGTCACGAGCGCACGCACTCGGGCAAGAGGCCATACGTTTGCGAAGTTTGTCAAAAGACCTTCACACAGCCTAGCTCGTTGAAGGCGCACAAGCAGAAGCATCAGCAGATTCGAATGGACTTTTTGGATTATCAGATCGACGAGGACGATCCTATTGCTCTGGCGACATTGTGA
- Protein Sequence
- MEINTLINMNMQEKNSVKLQGTRHNTLKIFKCPQCGSTFDRASQLGYHHRSIHLGERSQICQICEKGFFRKADLRTHLNIHLGTNFHICEVCGRKFSHISNLIRHCRMHTGIKPYSCVICDKRFTQISSLARHRQMIHGIPKETMNQYCNPSLINNKSQVTNHALKENKTIDNNIESRYEIYMEPKCLNQTRDSDVQKNDIIFNQHNNDMDNKASLQTGIYITSKQDNLMENESTNRLPQATHIAEIEERLGSTDLPINKTVVSNSPQNIVNNHEQIQSKDNISYLHQLDKNNFTFLPRDRGPNIELNTQNDENILRSSDSDMCIVHGTCKETSTNDIKKPLNTDTNLQTCNSNEVSANQKFLHKQISTEDIINENRKYNKLLSDDDNQLYIELSDSGMLKFDDSRYCNNTDSVSMNLSHTIKSQSSTVANDVIYAPVDMQNQDNLLQNEENLENFNNLSNIVLNNEEPMLRLVQTDTGEQFYEFIMNNLVEKMQNASCIKDLENKVEEPSNTFRYCPKMELSPKESNEKSDQSEQIEHQQALESLTDINNEFNYTQLDFHGEEKNFTALCHDESENFQQNSKDDECADNIEEKSMQAYNSANLELLENESHVDFDKYVETNLEALDKLNYENCNERFLEFVEVADIGIESSGFKESSMIRLIQSDGEQLLELLQDSQIAEQESNQDFLEANNLDKDCSNVLQDSNKIVDCPKNKSDFFTYVEDNVLLEENINHNQGIENNEERVDSNDLYADIMTSESTSNKKCVKTSEEPKKLKTKDTTKKFQCTECKKAFSTSYNYKQHIGIHFTDQQKFHCKDCGVSFAWKSTLNKHIANNHSSDGPQKFVCEICPKVYSTLSQVNEHVKRDHLKQRNHVCSHCGKSFFKRFDLKTHSRTHTNERPYVCGICGKRFHHQSHIIRHERTHSGKRPYVCEVCQKTFTQPSSLKAHKQKHQQIRMDFLDYQIDEDDPIALATL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -