Lhum008863.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- -
- Assembly
- GCA_000217595.1
- Location
- NW:320167-326138[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.16 9.7 6.2 1.4 1 23 299 321 299 321 0.91 2 13 2e-05 0.0012 18.5 1.1 1 23 326 350 326 350 0.94 3 13 0.00023 0.014 15.1 2.6 1 23 394 417 394 417 0.97 4 13 8.9e-07 5.6e-05 22.7 1.8 1 23 422 444 422 444 0.98 5 13 0.0023 0.14 12.0 0.1 1 23 454 477 454 477 0.89 6 13 9.6e-07 6e-05 22.6 4.6 1 23 483 505 483 505 0.98 7 13 3.6e-06 0.00023 20.8 1.0 1 23 511 533 511 533 0.98 8 13 0.0011 0.066 13.0 5.1 1 23 539 561 539 561 0.97 9 13 1.2e-08 7.7e-07 28.5 1.0 1 23 567 589 567 589 0.98 10 13 4.3e-06 0.00027 20.6 3.3 1 23 595 617 595 617 0.98 11 13 9.7 6.1e+02 0.6 7.7 2 23 624 645 623 645 0.95 12 13 4.6e-06 0.00029 20.4 1.0 1 23 651 673 651 673 0.98 13 13 3.6e-07 2.2e-05 24.0 1.7 1 23 679 701 679 701 0.98
Sequence Information
- Coding Sequence
- ATGGTAGACGTGTACCTGTACGACTCGACTGTCTGCCGATTATGCGCGGCGGATGACGGTAACGAGCCTCTGTTCGCTAACAATACGGGCGAATCGGATTTGTGCTTATTGGTGAATCGTTATCTACCACTGAAGgtTCGAGATGATGGTAAGTTGCCACAAACAATTTGTCCAGGCTGTAACATTCAGCTGGAGGCAACGGCACAATTCTTTGATCTATTGGTTACTGGTCAACGCAAATTACGTGAACTTTGGAAACATCAAGTTGAAGAGCAGCGAAAAGCAGAACGCTTGCGGAATAGAAAGGAGAATACAGAACTTGAGACAGAAGGAACAGAGATGGATTGCATGGCTCAATACAATGAGGACGAGCAGTATGAGCAGCAAATCGTTATTAAgataatgcCAGATGGATCTCTATATGCGGCAGAGCATGAAATGAGTTTGCAAATGGAAGGCTTAACTAAGCCGAAGAGAAAACGTGGACGTCCACCTAAAGTACATACAGAAGCAGAATCTTCGGCAACGAAAGAAAACCCTGCAGAAGTGGTAAGCCAAGGTGAAGAAGATAAACAGGAAGAAGAAGTGGAAGAAATGGATGGTGATGGTAGACGTAGGAGAAAACGCAAAGTTCCTAAAAGGTTTATGGAAGCTGTACAAGGAAAGGAATTGGAAAGAATATTCAAGGAGGAAGGTGTGATTGATGAGGAAGACGATGATGACTCTGAGTTGTTTGATGATTCAGAGGAACCGTTAAATGTTTCTGTGCAAGATGGTCAGGAagAAGTAATAGGTCACCTCGAAACAGAAGAGGGCAAGGACTTGGGCGAACTGGTAGTTGTGAATCGTGGACGAGCACGAGCAAAATCGAAATTCCGCCGTCGGAAAACTAGATTTACATGCCAACTGTGCGGCAGAGGTTTTCTACAACGCAGcagatatataatacacaagAGTTTTCACAAAAACATCAAGTACGAGTGCGCACAATGCAAGAAGTTCTTTGATAGTAaggaaaatttagaattacatCAGAAAACTACTGAGCATAGTTTAAATGTTGCTGAAGAAAATACTGAAGGACAAAAGTCACTTGAGAGAGTACAAACAACAAGCAGCACAGAACAGGATTCCTTCGCGACGACAACTGAGACTACAAAAGACAATAGTGACACACCTCACACTTGCAAAAAGTGCGATAAGCAATTTGAATCAAAACAAGAATATGAATTGCACGAAAGAATGGCTCATGATCAACAGAAGTTTTCCTGCTCCGTTTGCAATAATAGTTTTACAAACCAGTCGAATTTGAAGATGCACATGACAATGCACAAGAAAGTTTCAAAATCAGAAAAGGAATATCCTTGCGATATCTGCGGCAAGGTCCTAAATCATCCCAGTTCCGTCGTGTATCACAAAGAAGCGGAGCACAACAATGGGCGTCGTTTCGTCTGCAACAAGTGTAACAAAAGCTTCAAACACAAACAACTGCTCCAACGTCATCAGTTAGTGCATTCCGATGATCGACCGTACATTTGTAAATCTTGCAATGCCAGTTTCAAGACGAAAGCGAATCTGATTAATCATCAGTCCACTCATACGGGCGAAAAGAAGTACTTCTGCGAGATTTGCAAACAGCAATTTGCACACAAGACTAGTCTCACGTTGCATCACAGGTGGCACACTGGCCATAAACCGTACAGCTGCAAAGTGTGTCAGAAAAGCTTCTCGCAGAACGGCAATCTGCAGGAACACATGCGCATCCACACTGGTGAAAAACCGTATTCCTGCGACTTTTGCGGCCGGAAGTTTACCACATCGTCCCAGTTCAAGTTGCATGTGAAACGGCACACCGGCGAGCGACCGTGGAAATGCGAATATTGCGCGAAATGCTTCTTGCACAAGGACACGTGGAAGTGCCATGTACGACGACACAAAGGGGAACGTCCGTTTCAATGCACCCAGTGTAATCGCGGGTTTACGGAGCAATGGGCGCTGAAGAAACATCTTCGTTTGCATACTGGCGAAAAGCCTTATTCTTGCGAACTGTGTGGTAAAGCTTTCGCTGACTGCTCAAATCTGACAAAGCACAAAAAGGTGCACAGGGAGAATAAAGTATTAACTATAGACGAGTCGGAGGAATCTCCAATTGGAGAGGTGTGGCAAATCTTGCCGAATTCGCAGGAAACTGACGAGCAGACGTTCAATCATCAAATGACGCAGGTGATCGCCACCGATGAGGCATCCACTGATGGGATTCAACAGATTATCTACGTGTCCTATCAGGATCCAAATGATCCTAATCAACGAACGTTGCACTTTGTTGATCCTGGCATAATGAAAAACAAAGTCGAAGTAACACCGGACGTGAATTCCCTGCCACGTTTAGACGAAGAAATAATCaacgaaaaaattatgaataacgCAAACGCCAATGAAGAGCATTCCAAAGTGGAATTATCGGAATCAGATTTACATTTGCAGATCACTGATGAAGATGGAAATCCGATTCCTCTGTCCATCCAAGAGGCTCGACAGCTTCTCTCTCAGGGACATTTTATCAGCCAACTAAGTAACGGCCAGATTATTAGAGTTCATCCTGGGATGTTTGCGCAACAACTACAGGCTTTAAATATCCACCTGGATGAAGAGCATGTAGCCGAGGAAAATGAAGTTATCGCACATCAAAATACAACGAAGAACGTCGgaacaatttcaacaattcAAACCGACGCGGAAGCAATCGTCCAGGCGCTCGAGgaCGAGGATACCGACGCAACTGCAGTCGCGACAATCAATCAGTTGGAGGGTGTCGAGCAAGCTGAACTCGCGGATGGTGAACAGGCGATAGAATTCATGACTCAGAATGGACAAAAGGTTCGCGTCCTAACGTCGTATCCAGTTGACCCAATGCAATTCGGGTCTGAGTACCTGactattgtataa
- Protein Sequence
- MVDVYLYDSTVCRLCAADDGNEPLFANNTGESDLCLLVNRYLPLKVRDDGKLPQTICPGCNIQLEATAQFFDLLVTGQRKLRELWKHQVEEQRKAERLRNRKENTELETEGTEMDCMAQYNEDEQYEQQIVIKIMPDGSLYAAEHEMSLQMEGLTKPKRKRGRPPKVHTEAESSATKENPAEVVSQGEEDKQEEEVEEMDGDGRRRRKRKVPKRFMEAVQGKELERIFKEEGVIDEEDDDDSELFDDSEEPLNVSVQDGQEEVIGHLETEEGKDLGELVVVNRGRARAKSKFRRRKTRFTCQLCGRGFLQRSRYIIHKSFHKNIKYECAQCKKFFDSKENLELHQKTTEHSLNVAEENTEGQKSLERVQTTSSTEQDSFATTTETTKDNSDTPHTCKKCDKQFESKQEYELHERMAHDQQKFSCSVCNNSFTNQSNLKMHMTMHKKVSKSEKEYPCDICGKVLNHPSSVVYHKEAEHNNGRRFVCNKCNKSFKHKQLLQRHQLVHSDDRPYICKSCNASFKTKANLINHQSTHTGEKKYFCEICKQQFAHKTSLTLHHRWHTGHKPYSCKVCQKSFSQNGNLQEHMRIHTGEKPYSCDFCGRKFTTSSQFKLHVKRHTGERPWKCEYCAKCFLHKDTWKCHVRRHKGERPFQCTQCNRGFTEQWALKKHLRLHTGEKPYSCELCGKAFADCSNLTKHKKVHRENKVLTIDESEESPIGEVWQILPNSQETDEQTFNHQMTQVIATDEASTDGIQQIIYVSYQDPNDPNQRTLHFVDPGIMKNKVEVTPDVNSLPRLDEEIINEKIMNNANANEEHSKVELSESDLHLQITDEDGNPIPLSIQEARQLLSQGHFISQLSNGQIIRVHPGMFAQQLQALNIHLDEEHVAEENEVIAHQNTTKNVGTISTIQTDAEAIVQALEDEDTDATAVATINQLEGVEQAELADGEQAIEFMTQNGQKVRVLTSYPVDPMQFGSEYLTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01245382;
- 90% Identity
- -
- 80% Identity
- -