Lhum008572.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- -
- Assembly
- GCA_000217595.1
- Location
- NW:1084421-1096972[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 5.6e-06 0.00035 20.2 1.0 1 23 278 300 278 300 0.98 2 32 0.0081 0.51 10.2 3.7 1 23 323 346 323 346 0.96 3 32 0.00055 0.034 13.9 0.5 2 23 353 375 352 375 0.96 4 32 0.015 0.94 9.4 0.0 1 21 395 417 395 418 0.95 5 32 0.027 1.7 8.6 0.2 2 23 516 537 515 537 0.93 6 32 0.01 0.64 9.9 0.8 1 23 543 566 543 566 0.97 7 32 0.00016 0.01 15.6 0.1 1 23 641 664 641 664 0.96 8 32 0.0024 0.15 11.9 0.5 1 23 670 693 670 693 0.96 9 32 0.056 3.5 7.6 0.8 1 23 706 728 706 728 0.97 10 32 0.00013 0.008 15.9 2.8 3 23 773 794 772 794 0.96 11 32 0.52 32 4.6 0.5 1 23 827 850 827 850 0.94 12 32 0.01 0.62 10.0 0.8 2 23 857 880 856 880 0.95 13 32 0.7 44 4.1 0.0 2 23 889 911 889 911 0.91 14 32 0.0028 0.18 11.7 0.1 2 23 918 940 917 940 0.96 15 32 1.2e-05 0.00073 19.2 1.2 1 23 948 970 948 970 0.98 16 32 0.039 2.4 8.1 0.6 3 23 1009 1031 1007 1031 0.92 17 32 0.018 1.1 9.2 2.6 1 23 1034 1057 1034 1057 0.97 18 32 0.00022 0.014 15.2 0.2 2 23 1064 1086 1063 1086 0.96 19 32 0.0023 0.14 12.0 5.4 1 21 1109 1129 1109 1130 0.95 20 32 0.0024 0.15 11.9 1.8 2 23 1144 1165 1143 1166 0.93 21 32 0.4 25 4.9 1.4 1 23 1169 1192 1169 1192 0.94 22 32 0.0076 0.47 10.3 2.2 2 23 1199 1222 1198 1222 0.92 23 32 0.48 30 4.7 0.1 2 23 1230 1252 1229 1252 0.94 24 32 0.66 41 4.2 0.0 2 23 1259 1281 1258 1281 0.93 25 32 0.2 13 5.8 2.7 2 23 1290 1312 1290 1312 0.96 26 32 0.97 61 3.7 0.6 2 23 1318 1340 1317 1340 0.92 27 32 0.066 4.1 7.4 0.1 1 23 1402 1425 1402 1425 0.95 28 32 0.0019 0.12 12.2 2.8 1 20 1452 1471 1452 1473 0.94 29 32 0.29 18 5.4 1.9 2 23 1573 1595 1572 1595 0.94 30 32 0.47 29 4.7 0.3 2 23 1602 1624 1601 1624 0.94 31 32 0.62 39 4.3 2.5 1 23 1635 1657 1635 1657 0.97 32 32 0.14 8.6 6.4 0.0 1 19 1661 1679 1661 1682 0.94
Sequence Information
- Coding Sequence
- ATGGCGACGATatcgacaacgacgacgacgacgacgacgacgacgacgacgacgacgacgacgacgacatcATCATCGACGACATCGACATCGACGCCGACATCGACGTCGGCGTTAGGAGCGACAATGAAGAGCGCAATGGCGATGACGGAGCATAGGAAGTCTTACAACCAGCTCTGCCGTTTGTGCGCCTCCTTCGACGCCGTAAGGATGGACATATTCGGCGAGGAAGGCAAGAATCGGCAACTCGTTCAGAAGATACAGGCGTGCCTGCCGTTCAAGATAGAGGAAGATGATTCTCTGCCGAATGTCGTGTGTTATCGATGCAtgtttaatttggaaaatttttatgactttAGAACTGCGTGCATTCACGCAGCTGCTTGGCTGCAAAAGAATAAGCCAAAAACAGAAGGCGCGAGCGATGACGGTGCAAATGATAGCGCGCAATGCGGCAAGGTGCACGCGGAGCTTCTCAAGGAGAAGGAAAACATGCCAATACTTATCCCAGAGGCGCCAGTGGTCAATCCCAATGCGGCATTAGGTACACCGCCGAGATTAAATTCCGACGGCGAAGCGGATCCCGAGATAGAGGAGATTCTCGATACAAGTGAAGGTACGGACGAAGcAACAGTAGTGGACGATTCGGAAGACCGCCGATCGGAATATGAATACGAAATGGACATGGAGACGAATCCCAGCGACTTTTTGGAAATGACACCGATGGTAACCGAAGACAACGAGGAAGAGTGCGGCACGAGCAATCCGAGTGCCGCGACCACTCAGGACGCCGCCGCCGTCTTTCCGCATATATCACAGCAACACGAAGTCTACGTCTGCTCTTTGTGCAACAAGGCGTTTAGCTCCAAGGGTCACTTGTCTTTGCATGCGAGGATTCACGTGGGTGAGGGTGACGTGATCGGCGAAAGAGTAATCACCGACGATCACACTTCGTATCAGCGGCCGTATCAATGCGATCTTTGTCATAAATCGTATTCTACTGCGAAGCATCGTTGGGGACACGTTTCCACAACTCATCGGGGACATCCTGCTGTGACTTGTGCGTATTGCTCGCGCATTTACTCAACACGATACAATCTCGACGAGCACATAAAGTCACGACACGCTGGTCTACCACCGCCGCCAGAGTTATCGGTTTCCTTTTCTCGCACAGAGACTCGTTATCAGTGCCAAATAGCACAGTGTTCAATGGTTTTTACGGATTTAGCAGATTTTAACGCGCACCGTCAGATATGCGTCGAGGAGCAACGCACTGATTTGTTGGGACAAGTTGAAGCACAGAGCAACAAGAATTTGGTCGATACGTCTGATGTTACGAGTTTAGACTCGGACGACGATAATAAAGACTTTAGGAGTGCCGAAGCTAAACTGGCGAAAAATCCACAGTTGACTATATTGAAACAAGCACTGACTAAAGGAGACAGTTTGAAGCGCAATTATGATGATGATGGTTCAATAACCAGTTCTAAGCCGAGGAAAATAGTTAAAAcagAAGGTAGCGAAACAAATTCCCAGAAGAGATGGTATTGCGATTTTTGTTCGCAAAATTTCACGTCAGTCGACAGTTTGAAAGAGCACGAGGTTATACACGAAGCCGAGAAACCGTATATATGTTTGCTGTGCAAAAGAGATTTTATGTTGAAGACTTCCTTGAGCAAGCACATTTTAACGTTACACGGCGTCGATCCTGCTCCTTTCGTTGAAAGCGACAAGTGTCTAAAGACGGCCATAATGTCGCAGAGTTGGAACGACCAGATAGATGTTAGTGTTTATGACCAAAGCGAAATGAAGGAATCACCGGAATTCCCACCGTCACCCGAGATAAATGTGCAGAACAACATTGTCTATGACGACAAAGACTTGAAGAACAACGATGACAATGTAGAAATCGAAACAGTATTTATATGCGAGGTTTGCTCGAGGGACTTTAGTGATCGAGCGTCGTTATGGTTGCACATACGAGCAACACACAAGGATCTTGCTGCATTTGCTTGCGGTGTGTGTTTAAAGATTTGTTCTGATAACGCACAACTGCAGAATCATGTCAATATGTACCATGGGGTATCTCAGCGTTCAATATCGGAGCAAAGGAGGTACAGTTGCACGATATGCGGTAGACAGCATGACTCGAGAAAGAAGCTAATCGCCCACGTCTCTATACACAATATCGATCCTGGATATGATCCTGCAActtttgtacaattaaatagtaattacTACAATGAGAATTAAATGGTAATCGAAGGAAACGAACAATTACAAGATATGGATGGAGAAGAAGACGAGAAAGTCGATTGCTGCATTTGTTACAAATCGTTTCCAAATGAGGATCATCTTATACGGCATCAGAGAAATGCTCACAAGTCTGAACAAATAGTTTCGATAGGGGACGCTGCTGGGAGCGGAAATGCGTTAAGTGTTAACGGCAACAGCAATAGGACgcaaatgcatttatttttcatgtgcGAAGTATGTGGCACTTCTCATTCCAGTAAATGGGAACGCTGGTTGCATATCAACAATATGCATAGTAACGAACCTTCGATTAAGTGCGAATGGGAGAACTGCGGGAAGATATTCGCGACGAAAACGTTGCGCAACGACCACATACAGCATCATCTGGTGCAAGGCCCGTCGCCGAATACCTGCGAAATATGCGGGAAACTGTGGGCCACCCGTGTCGATTACTGGAAACACGTGATGGGCGTGCACGCGGACACGGTACCTCTGATTTGCGGTGTTTGCTTGAAAGTATTCTCCGACGTGATACAGTTAAGTACGCACGTGAGAACGAAACACTGGCCCCTGACCAATGGTGACTTTAGCTGTGATATTTGCGGTCGGCCGTATTCTAACAAGTCGAAGATGTCGCGGCACAGGAAGATCCACGGTTTGGAGGCGGCGGTAGGGGCGGACACTGCCTGTGATAATAGCAGCCTCAACGAGACGACCAACGAATCGGTCAGACCGGATCACAACGGCGCCGTGGAAATCGAATTGAACTGCGAGCTCTGTCCCGATCTGGCGTTTTCCAATCTGGAGAGTTTATGCAATCACCGACGGACGATACACCGTCTCTTCCCATGCGATCTGTGCATCAAGTGTTACGGCAGAACGTCGCATTTGTGGAAACATGTGAACAGAGTGCACAAGGGTCACGCGGACGTGACTTGCCCGTACTGCTCGAAGACAAGCGCGTCGCGGGAACATCTGGCAGCGCATATCGCGAAGATTCACAAGCCCGATAAAGACAGTCAGAACTTCGTCACTTCGAAATCTTTAAGCATGGAGGACGGCGTCATGCATTACTGCGAGAAGTGTCATAAGGGATTCCACAAGCGTTACCTGCTTCGCCGTCACATGAAAGGCTGCCAAAACTACCGCAAAGATCCCAGCGCGCTGTTGACGCGCTGCCGCGCCTGCGAGAGAATATTCAAGGACCGTGCGAGTCTGCAGAAGCACATCGAAAATCACCACAGCACGTACACGTGTCATTTGTGCAACGAAACAATCACCTCGAAACTGGGCATCATGACGCACAACCGCGTCAAGCACATGGATCATCCGGACTTGACGTGCGAGCACCCGAACTGTAAGAAACTCTTCCGCACGAAGGAGGATCTGGAATCCCATCGAAAGGACCACAAGTATCACACCAATCCGGACGTGTGTGACTATTGCGGCGACACCGTGGAAAACAAGCTGAAACTGAAGATGCACGTTCTGTCGCTGCATCGAAACGAGATTGGCGTATCTTGTGGCGTCTGCCTCATTCCCATGAAGGATCCCAAGGAACTGAAGAAGCACGTCGAAACGGAGCACAGCAGCGTACTTTCCAATCCGAACACGTGTCAGGTGTGCGGCAAGCAATATGCGTCCAAGTGGAAGGCGTTTGACCACACGAAGAAGTGCCACGGAAAAGTTTTTCTCACGTGCAAACAGTGTCTCGCGGTCTTCACGGAGGAGAGCGAGATACGCGACCACTACGAGCATATGCACAATGTTCCGAAGGACCAATTAGCCGTTTTCGAATATAGGATGGATATAAGTGTGAAGAGAGAAGGTTACGACACACCCGACATCATCGTGAAGGAGGAACCGGACGATTTGGAGTACGACGAGGAGATGGGCGACGACAGCTTGAGCGATTCTCGCAAACGCAAACGGTCGCCGAATGACACGTACGATTGCGAGATGTGTCCCGAGATCTTCCTCAATCTCGAGACCCTCGCCAAGCATTATCAGAACGTGCACAACACCGATCCCGTTCGTATGTTCAAGAAATTCAGAAAGGACGGCGACGGCAAGCGCAAGATGAGGAACAGAAACAACTTCGAGTGCAAGAATTGCAAGAAGCATTTCACCACCAAGACTCTCTACTGGAATCACACCAGCGTGTGCACGCGGCGAAACTCGGTCGGCAGATACGACATTCCGAACAACATCCCGACGTCGATTCTGGAGTCTCATCTGAAGAACAATAATCAGATTCAGCGAGAGGAACCGATGCCGCTGGCGAACGAGTCCAACTTGAACATTCCCGATTTCAATCTATTCGAGGACATCAATTTGCAACTTTCGGCGCAGAAACCCGTGCCGAATCTCATGCCGTTGTCGCAGATGAAGCCGAGCAACGGCAAGTGTTCGAGAAAGGACTCGCGCAAGGTGTACGACGAGTCGACCAACACCGAGTGCACGTGCGAGGTTTGCGGCAAACAGTGGCCTGCTAAGAAACATCTGTGGCAGCACTTGATTCGCTTCCATCGCGCAGAAGCCGCCGTCACATGCGGCGTATGTTTGAAGCTGTGCAAATCCTACGAAGATTTGGCTGATCACCTGAAGGCCGAGCACGCCCCCGTTTTGTCGCCAGAAGGTAACAACTTCACCTGTAAGACGTGCGGCAGGTATCACAACGCGAGAAGTAAATTGCTGCTTCACATGAGCATCCACATCGGGAATTTCCGGTGTCAGAGATGCGAGCAAGGTTTCGCCAGCGAAGAGAAGCTTATCGAGCACGCGGCGATCTGCAGCTGCAAATCGGAGTTCGTGGATCACGCCGCTGCGGACGAGGATAACGTGAAAAACGAGAACGACGAAAAGGGCAGCCTGATCGCCGACGAGACGTCGGTCATCGGCGAGGCGGAGGAAGCGGACTTCGAATCGGAAGGTGAAGCGAGCAGGAGCATCCACGAAGAAGACAGCAATAGTGAGGAGGACAACTCGGAAAATAGCGATGACTCTGACAGTAATAGTAATAGCAATAGTAATAGCAGCTCGAGCGAGGACGAGgacgaagaagaaggagaggaGGAAAACGGGAACGAGTCTGGCACGAGGACCAGCAGTAGAGCGAGCAATAATACTGTGTCGTGTAATTCCGAAAGTGACAGCGAATCGGACACGGACGAAGCGGAGGTGCATGCGATTAAAGAAGAAGTGCCGCAAATGAGTAGCATCAATAGGTTCAGAATACACGGCGAAGACGTTCAAGAGAATTCGCCGATGGAAGAAAACGTTGAGGACGATGTGGAAACCGTAGTGACGGGTGCAGAACAAGCTAAACAAAGTAACTTGAATAATCTATTGATTTCCGGCACTTCCGCAAACGCTAACAAATTTGAGGCAGCGCATCACGAAGAATCGATTAAAATGGAGGTGAGCGTGGACTTATCTGAGGACAGCAACaatgaagaagaagagaatgaTGAAAatgaggaagaggaggaggaagaggaagaggaagaggaagcgGAAGCGGAAGCAGAAGCAGAAGCAGAAGCAGAAGTAGAAGTAGAAGaagcagaagaagaagaggaagaagaagaagaacagAACGAGATCAAGATTGAAAGTGAGGAAGAAGGTGAGAGCGAGGGTGAGGGCGAGGGTGAAGGCGAAGTCGATAGCGACGCCGAGGACGAAGGCGAAgcagaggaagaggaagaggaagaagatgGTGAGGAGGATGACGAAGGACCGCCCGTCTTGAGCCCAATAATGCCCTTGTTAGCGGAAAACGAATCTGAAGAGCACAACAGCACAAGGCACAAGCTAAGTCCGATGGTTCCGCTGAGTATCGACAAAATAGAGAAGTGCGAGATGATAGAGATACCAAACGACGCCGAGAATGCGGACGCTCCGTCGAACGCGTCCAACTTCTTCGCGACTAACAACAACGACTTACCTGTGACGTGGGAGGACGACTTGGAAGGGGATGACAATGCCAATGCCGACGACATGAACGTGAAAATCGACGAATTCAAGAAGGAGTACAAAGTGAACGAGGGCGATGAGTTCGAGGAGGATTCTACGAATGAGAATGTAGTGGACGACGGTGGAGACAATCAAGTGCACGAGATACATAATCTGGACGGGACTGTGTTGATGGTGGCTAATGATGCGGACGGTAATCAGATCTTGATAGAACAAAACATGCTAGACATCGATAACGAAGACTCTAACGCCGAGACGACGCAGTATATTTACCCGGAGAACGCTTACGAGATCGAGAatgaggaagaggaggaggaagaggaggaggaagattATGCGACGCAAAATGAAACCGACACTATGCAGATGGACGAGATGCAAGATGGTGTGTCTTACGTTCAAGAGATGTCCGAGAACGACGACAGTATGGAGGGTGAAATCGAAGAGAACAGTAGTGATGCACAGAAGTAG
- Protein Sequence
- MATISTTTTTTTTTTTTTTTTTTSSSTTSTSTPTSTSALGATMKSAMAMTEHRKSYNQLCRLCASFDAVRMDIFGEEGKNRQLVQKIQACLPFKIEEDDSLPNVVCYRCMFNLENFYDFRTACIHAAAWLQKNKPKTEGASDDGANDSAQCGKVHAELLKEKENMPILIPEAPVVNPNAALGTPPRLNSDGEADPEIEEILDTSEGTDEATVVDDSEDRRSEYEYEMDMETNPSDFLEMTPMVTEDNEEECGTSNPSAATTQDAAAVFPHISQQHEVYVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLPPPPELSVSFSRTETRYQCQIAQCSMVFTDLADFNAHRQICVEEQRTDLLGQVEAQSNKNLVDTSDVTSLDSDDDNKDFRSAEAKLAKNPQLTILKQALTKGDSLKRNYDDDGSITSSKPRKIVKTEGSETNSQKRWYCDFCSQNFTSVDSLKEHEVIHEAEKPYICLLCKRDFMLKTSLSKHILTLHGVDPAPFVESDKCLKTAIMSQSWNDQIDVSVYDQSEMKESPEFPPSPEINVQNNIVYDDKDLKNNDDNVEIETVFICEVCSRDFSDRASLWLHIRATHKDLAAFACGVCLKICSDNAQLQNHVNMYHGVSQRSISEQRRYSCTICGRQHDSRKKLIAHVSIHNIDPGYDPATFVQLNSNYYNEN*MVIEGNEQLQDMDGEEDEKVDCCICYKSFPNEDHLIRHQRNAHKSEQIVSIGDAAGSGNALSVNGNSNRTQMHLFFMCEVCGTSHSSKWERWLHINNMHSNEPSIKCEWENCGKIFATKTLRNDHIQHHLVQGPSPNTCEICGKLWATRVDYWKHVMGVHADTVPLICGVCLKVFSDVIQLSTHVRTKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLEAAVGADTACDNSSLNETTNESVRPDHNGAVEIELNCELCPDLAFSNLESLCNHRRTIHRLFPCDLCIKCYGRTSHLWKHVNRVHKGHADVTCPYCSKTSASREHLAAHIAKIHKPDKDSQNFVTSKSLSMEDGVMHYCEKCHKGFHKRYLLRRHMKGCQNYRKDPSALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCEHPNCKKLFRTKEDLESHRKDHKYHTNPDVCDYCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKKHVETEHSSVLSNPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTEESEIRDHYEHMHNVPKDQLAVFEYRMDISVKREGYDTPDIIVKEEPDDLEYDEEMGDDSLSDSRKRKRSPNDTYDCEMCPEIFLNLETLAKHYQNVHNTDPVRMFKKFRKDGDGKRKMRNRNNFECKNCKKHFTTKTLYWNHTSVCTRRNSVGRYDIPNNIPTSILESHLKNNNQIQREEPMPLANESNLNIPDFNLFEDINLQLSAQKPVPNLMPLSQMKPSNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYEDLADHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGNFRCQRCEQGFASEEKLIEHAAICSCKSEFVDHAAADEDNVKNENDEKGSLIADETSVIGEAEEADFESEGEASRSIHEEDSNSEEDNSENSDDSDSNSNSNSNSSSSEDEDEEEGEEENGNESGTRTSSRASNNTVSCNSESDSESDTDEAEVHAIKEEVPQMSSINRFRIHGEDVQENSPMEENVEDDVETVVTGAEQAKQSNLNNLLISGTSANANKFEAAHHEESIKMEVSVDLSEDSNNEEEENDENEEEEEEEEEEEEAEAEAEAEAEAEVEVEEAEEEEEEEEEQNEIKIESEEEGESEGEGEGEGEVDSDAEDEGEAEEEEEEEDGEEDDEGPPVLSPIMPLLAENESEEHNSTRHKLSPMVPLSIDKIEKCEMIEIPNDAENADAPSNASNFFATNNNDLPVTWEDDLEGDDNANADDMNVKIDEFKKEYKVNEGDEFEEDSTNENVVDDGGDNQVHEIHNLDGTVLMVANDADGNQILIEQNMLDIDNEDSNAETTQYIYPENAYEIENEEEEEEEEEEDYATQNETDTMQMDEMQDGVSYVQEMSENDDSMEGEIEENSSDAQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -